MC08g1410 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1410
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribonuclease T(2)
Location	MC08: 15537466 .. 15537630 (-)
RNA-Seq Expression	MC08g1410
Synteny	MC08g1410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCTCCTCATATTCATATTCATGTTCTTCTTCATGGGAGGTGAAGGATATGATTACTTTCTGATGGTCCAACAATGGGGGCCAGCCACATGTACCGGCGTCGGGGTGGCATGTTACACGTTTCCTCTGCTCATGTTCACAATTGATGGTCTTTGGCCCAGC

mRNA sequence

TTTCTTCTCCTCATATTCATATTCATGTTCTTCTTCATGGGAGGTGAAGGATATGATTACTTTCTGATGGTCCAACAATGGGGGCCAGCCACATGTACCGGCGTCGGGGTGGCATGTTACACGTTTCCTCTGCTCATGTTCACAATTGATGGTCTTTGGCCCAGC

Coding sequence (CDS)

TTTCTTCTCCTCATATTCATATTCATGTTCTTCTTCATGGGAGGTGAAGGATATGATTACTTTCTGATGGTCCAACAATGGGGGCCAGCCACATGTACCGGCGTCGGGGTGGCATGTTACACGTTTCCTCTGCTCATGTTCACAATTGATGGTCTTTGGCCCAGC

Protein sequence

FLLLIFIFMFFFMGGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS

Homology

[Close]

BLAST of MC08g1410 vs. NCBI nr
Match: XP_022157616.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 1.58e-15
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  FLLLIFIFMFFFMGGEGYDYFLMVQQWGPATCTGVGVACY-TFPLLMFTIDGLWPS 55
          FLLL+F+FMFF MG +GYDYFLMVQQWGP  CTGV V C+ T PL  FTI GLWP 
Sbjct: 6  FLLLVFVFMFF-MGAKGYDYFLMVQQWGPNKCTGVNVTCHGTPPLPTFTIHGLWPG 60

[Close]

BLAST of MC08g1410 vs. NCBI nr
Match: XP_022158516.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 4.70e-11
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 14 GGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          G EGYDYFLMVQQWGP+TC  V   CY  PL MFTI GLWP 
Sbjct: 22 GVEGYDYFLMVQQWGPSTCACV--RCYAQPLPMFTIHGLWPG 61

[Close]

BLAST of MC08g1410 vs. NCBI nr
Match: XP_038906187.1 (ribonuclease MC-like [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 1.70e-10
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 18 YDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          YDYF MVQQW PATC+GVGV C   P  MFTI GLWPS
Sbjct: 24 YDYFQMVQQWPPATCSGVGVRCRAQPPSMFTIHGLWPS 61

[Close]

BLAST of MC08g1410 vs. NCBI nr
Match: KAG6573816.1 (hypothetical protein SDJN03_27703, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.73e-09
Identity = 28/45 (62.22%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 11 FFMGGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          FF     +DYF MV QW PATC    VACYT P  MFTI GLWPS
Sbjct: 18 FFNSVYSFDYFQMVLQWPPATCKTKDVACYTAPPKMFTIHGLWPS 62

[Close]

BLAST of MC08g1410 vs. NCBI nr
Match: XP_023541880.1 (ribonuclease S-6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 9.43e-09
Identity = 27/45 (60.00%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 11 FFMGGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          FF     +DYF MV QW PATC    V CYT P  MFTI GLWPS
Sbjct: 34 FFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPS 78

[Close]

BLAST of MC08g1410 vs. ExPASy TrEMBL
Match: A0A6J1DYQ5 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111024276 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.64e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  FLLLIFIFMFFFMGGEGYDYFLMVQQWGPATCTGVGVACY-TFPLLMFTIDGLWPS 55
          FLLL+F+FMFF MG +GYDYFLMVQQWGP  CTGV V C+ T PL  FTI GLWP 
Sbjct: 6  FLLLVFVFMFF-MGAKGYDYFLMVQQWGPNKCTGVNVTCHGTPPLPTFTIHGLWPG 60

[Close]

BLAST of MC08g1410 vs. ExPASy TrEMBL
Match: A0A6J1E145 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111024988 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.27e-11
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 14 GGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          G EGYDYFLMVQQWGP+TC  V   CY  PL MFTI GLWP 
Sbjct: 22 GVEGYDYFLMVQQWGPSTCACV--RCYAQPLPMFTIHGLWPG 61

[Close]

BLAST of MC08g1410 vs. ExPASy TrEMBL
Match: A0A6J1FZP3 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.18e-09
Identity = 27/45 (60.00%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 11 FFMGGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          FF     +DYF MV QW PATC    V CYT P  MFTI GLWPS
Sbjct: 51 FFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPS 95

[Close]

BLAST of MC08g1410 vs. ExPASy TrEMBL
Match: A0A6J1FZQ4 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.33e-09
Identity = 27/45 (60.00%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 11 FFMGGEGYDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          FF     +DYF MV QW PATC    V CYT P  MFTI GLWPS
Sbjct: 51 FFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPS 95

[Close]

BLAST of MC08g1410 vs. ExPASy TrEMBL
Match: A0A6J1EXD5 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.00e-08
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 18 YDYFLMVQQWGPATCTGVGVACYTFPLLMFTIDGLWPS 55
          +DYF MVQQW PATC+GV   CY  P  MFTI GLWPS
Sbjct: 24 FDYFQMVQQWPPATCSGV--RCYANPPAMFTIHGLWPS 59

The following BLAST results are available for this feature:

BLAST of MC08g1410 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157616.1	1.58e-15	71.43	ribonuclease MC-like [Momordica charantia]	[more]
XP_022158516.1	4.70e-11	71.43	ribonuclease MC-like [Momordica charantia]	[more]
XP_038906187.1	1.70e-10	73.68	ribonuclease MC-like [Benincasa hispida]	[more]
KAG6573816.1	1.73e-09	62.22	hypothetical protein SDJN03_27703, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023541880.1	9.43e-09	60.00	ribonuclease S-6-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC08g1410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYQ5	7.64e-16	71.43	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111024276 PE=3 SV=1	[more]
A0A6J1E145	2.27e-11	71.43	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111024988 PE=3 SV=1	[more]
A0A6J1FZP3	6.18e-09	60.00	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1	[more]
A0A6J1FZQ4	8.33e-09	60.00	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1	[more]
A0A6J1EXD5	2.00e-08	68.42	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1	[more]

BLAST of MC08g1410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 18..55 e-value: 1.5E-4 score: 21.9
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 15..55 e-value: 3.0E-6 score: 29.4
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 4..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1410.1	MC08g1410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding