MC08g1400 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1400
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionHistone H2A
LocationMC08: 14917395 .. 14917502 (-)
RNA-Seq ExpressionMC08g1400
SyntenyMC08g1400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTGGCACCAAGGTGAAAAAAGGTGTAGACGGTAGAAGGGGTGGCGGTCCTAAGAAAAAGTCGGTGTCTCGCTCTATGAAAGTCAGCCTGCACTTTCCGGTC

mRNA sequence

ATGGAGTTTGGCACCAAGGTGAAAAAAGGTGTAGACGGTAGAAGGGGTGGCGGTCCTAAGAAAAAGTCGGTGTCTCGCTCTATGAAAGTCAGCCTGCACTTTCCGGTC

Coding sequence (CDS)

ATGGAGTTTGGCACCAAGGTGAAAAAAGGTGTAGACGGTAGAAGGGGTGGCGGTCCTAAGAAAAAGTCGGTGTCTCGCTCTATGAAAGTCAGCCTGCACTTTCCGGTC

Protein sequence

MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV
Homology
[Close]
BLAST of MC08g1400 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.7e-06
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRR-GGGPKKKSVSRSMKVSLHFPV 37
          M+ GTKVKKG  GRR GGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPV 37

[Close]
BLAST of MC08g1400 vs. ExPASy Swiss-Prot
Match: P40281 (Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.8e-06
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 37
          M+  TKVKKG  GR+GGGP+KK+V+RS++  L FPV
Sbjct: 1  MDASTKVKKGAGGRKGGGPRKKAVTRSVRAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy Swiss-Prot
Match: P25470 (Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.2e-06
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 37
          M+  TK KKG  GR+GGGP+KKSV+RS++  L FPV
Sbjct: 1  MDASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.2e-06
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 37
          M+  TK KKG  GR+GGGP+KKSV+RS++  L FPV
Sbjct: 1  MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-05
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 37
          M+ G K+KKG   R+GGGPKKK VSRS+K  L FPV
Sbjct: 1  MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. NCBI nr
Match: CAF1877568.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 56.6 bits (135), Expect = 5.79e-09
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. NCBI nr
Match: VDD18100.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 56.6 bits (135), Expect = 1.07e-08
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. NCBI nr
Match: XP_009125454.1 (probable histone H2A.4 [Brassica rapa] >KAG5407991.1 hypothetical protein IGI04_004310 [Brassica rapa subsp. trilocularis] >RID72876.1 hypothetical protein BRARA_B00055 [Brassica rapa])

HSP 1 Score: 56.6 bits (135), Expect = 1.87e-08
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. NCBI nr
Match: KAG2310327.1 (hypothetical protein Bca52824_021884 [Brassica carinata])

HSP 1 Score: 56.6 bits (135), Expect = 1.87e-08
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. NCBI nr
Match: KAG1337907.1 (histone H2A [Cocos nucifera])

HSP 1 Score: 55.8 bits (133), Expect = 3.39e-08
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          ME G KVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MELGGKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy TrEMBL
Match: A0A3P6CU84 (Histone H2A OS=Brassica oleracea OX=3712 GN=BOLC2T06053H PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.20e-09
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy TrEMBL
Match: M4EJA3 (Histone H2A OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.03e-09
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy TrEMBL
Match: A0A398AC63 (Histone H2A OS=Brassica campestris OX=3711 GN=BRARA_B00055 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.03e-09
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GRRGGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAGGRRGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy TrEMBL
Match: A0A7J8WRZ2 (Histone H2A (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_018850 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.80e-08
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ G+KVKKG  GR+GGGPKKK VSRS+K  L FPV
Sbjct: 1  MDAGSKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. ExPASy TrEMBL
Match: A0A6P6ARG9 (Histone H2A OS=Durio zibethinus OX=66656 GN=LOC111311915 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.56e-08
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRRGGGPKKKSVSRSMKVSLHFPV 36
          M+ GTKVKKG  GR+GGGPKKK VSRS+K  L FPV
Sbjct: 1  MDTGTKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPV 36

[Close]
BLAST of MC08g1400 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-07
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRR-GGGPKKKSVSRSMKVSLHFPV 37
          M+ GTKVKKG  GRR GGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPV 37

[Close]
BLAST of MC08g1400 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-07
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 1  MEFGTKVKKGVDGRR-GGGPKKKSVSRSMKVSLHFPV 37
          M+ GTKVKKG  GRR GGGPKKK VSRS+K  L FPV
Sbjct: 1  MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPV 37

The following BLAST results are available for this feature:
BLAST of MC08g1400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LZ463.7e-0672.97Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1[more]
P402814.8e-0661.11Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
P254706.2e-0661.11Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
Q2HU656.2e-0661.11Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P... [more]
Q9M5311.1e-0563.89Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
BLAST of MC08g1400 vs. NCBI nr
Match NameE-valueIdentityDescription
CAF1877568.15.79e-0975.00unnamed protein product [Brassica napus][more]
VDD18100.11.07e-0875.00unnamed protein product [Brassica oleracea][more]
XP_009125454.11.87e-0875.00probable histone H2A.4 [Brassica rapa] >KAG5407991.1 hypothetical protein IGI04_... [more]
KAG2310327.11.87e-0875.00hypothetical protein Bca52824_021884 [Brassica carinata][more]
KAG1337907.13.39e-0875.00histone H2A [Cocos nucifera][more]
BLAST of MC08g1400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3P6CU845.20e-0975.00Histone H2A OS=Brassica oleracea OX=3712 GN=BOLC2T06053H PE=3 SV=1[more]
M4EJA39.03e-0975.00Histone H2A OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1[more]
A0A398AC639.03e-0975.00Histone H2A OS=Brassica campestris OX=3711 GN=BRARA_B00055 PE=3 SV=1[more]
A0A7J8WRZ21.80e-0869.44Histone H2A (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_018850 PE=3 SV=1[more]
A0A6P6ARG92.56e-0872.22Histone H2A OS=Durio zibethinus OX=66656 GN=LOC111311915 PE=3 SV=1[more]
BLAST of MC08g1400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02560.12.6e-0772.97histone H2A 12 [more]
AT5G02560.22.6e-0772.97histone H2A 12 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1400.1MC08g1400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity