MC08g1399 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1399
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTy1-copia retrotransposon protein
LocationMC08: 14904486 .. 14904617 (-)
RNA-Seq ExpressionMC08g1399
SyntenyMC08g1399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATTCGATTCGGTAAGTTTTTTCTAGATCTATCCAAACTCGAACCATTGGGTCAATCCTATTACCGATGCTGGTCTCAGAAGCTATTGATCTTTTTCGAGCAATTGGAGGTAGACTACATTCTTCTGCTA

mRNA sequence

TCAATTCGATTCGGTAAGTTTTTTCTAGATCTATCCAAACTCGAACCATTGGGTCAATCCTATTACCGATGCTGGTCTCAGAAGCTATTGATCTTTTTCGAGCAATTGGAGGTAGACTACATTCTTCTGCTA

Coding sequence (CDS)

TCAATTCGATTCGGTAAGTTTTTTCTAGATCTATCCAAACTCGAACCATTGGGTCAATCCTATTACCGATGCTGGTCTCAGAAGCTATTGATCTTTTTCGAGCAATTGGAGGTAGACTACATTCTTCTGCTA

Protein sequence

SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYILLL
Homology
[Close]
BLAST of MC08g1399 vs. NCBI nr
Match: XP_022158735.1 (uncharacterized protein LOC111025197 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.90e-10
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 1  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
          +IR GK   DLSKLEPL  S YR WSQKLLIFFEQLE+DYI+
Sbjct: 3  AIRSGKVLSDLSKLEPLDGSNYRQWSQKLLIFFEQLEIDYII 44

[Close]
BLAST of MC08g1399 vs. NCBI nr
Match: XP_039046231.1 (uncharacterized protein LOC120186344 [Hibiscus syriacus])

HSP 1 Score: 59.3 bits (142), Expect = 8.05e-09
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 1  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
          S  F K+ LDLSKLEPL ++ Y  WSQ+++IFFEQLEVDY+L
Sbjct: 19 SFTFNKYILDLSKLEPLDETNYSRWSQRMVIFFEQLEVDYVL 60

[Close]
BLAST of MC08g1399 vs. NCBI nr
Match: PWA86048.1 (ribosomal protein L2, plastid [Artemisia annua])

HSP 1 Score: 58.9 bits (141), Expect = 1.74e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 2  IRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
          + F K F DLSKLEPL  + Y+ WS+KLLIFFEQLE+DY+L
Sbjct: 3  VSFNKVFCDLSKLEPLDGTNYKRWSEKLLIFFEQLEIDYVL 43

[Close]
BLAST of MC08g1399 vs. NCBI nr
Match: TYK04337.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.78e-08
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 5  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
           K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Sbjct: 7  NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC08g1399 vs. NCBI nr
Match: KAA0044882.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.11e-08
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 5  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
           K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Sbjct: 7  NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match: A0A6J1DWN1 (uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025197 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.31e-10
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 1  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
          +IR GK   DLSKLEPL  S YR WSQKLLIFFEQLE+DYI+
Sbjct: 3  AIRSGKVLSDLSKLEPLDGSNYRQWSQKLLIFFEQLEIDYII 44

[Close]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match: A0A2U1PJW3 (Ribosomal protein L2, plastid OS=Artemisia annua OX=35608 GN=CTI12_AA142330 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.43e-09
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 2  IRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
          + F K F DLSKLEPL  + Y+ WS+KLLIFFEQLE+DY+L
Sbjct: 3  VSFNKVFCDLSKLEPLDGTNYKRWSEKLLIFFEQLEIDYVL 43

[Close]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match: A0A5D3BXT2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3354G00010 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.64e-09
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 5  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
           K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Sbjct: 7  NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match: A0A5A7SKK3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004780 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.02e-08
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 5  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
           K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Sbjct: 7  NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match: A0A5A7TNG2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001750 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.02e-08
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 5  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL 42
           K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Sbjct: 7  NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

The following BLAST results are available for this feature:
BLAST of MC08g1399 vs.
Match NameE-valueIdentityDescription
BLAST of MC08g1399 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158735.18.90e-1073.81uncharacterized protein LOC111025197 [Momordica charantia][more]
XP_039046231.18.05e-0964.29uncharacterized protein LOC120186344 [Hibiscus syriacus][more]
PWA86048.11.74e-0865.85ribosomal protein L2, plastid [Artemisia annua][more]
TYK04337.11.78e-0873.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0044882.12.11e-0873.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWN14.31e-1073.81uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A2U1PJW38.43e-0965.85Ribosomal protein L2, plastid OS=Artemisia annua OX=35608 GN=CTI12_AA142330 PE=3... [more]
A0A5D3BXT28.64e-0973.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SKK31.02e-0873.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TNG21.02e-0873.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of MC08g1399 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1399.1MC08g1399.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding