MC08g1374 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1374
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationMC08: 13361413 .. 13361850 (+)
RNA-Seq ExpressionMC08g1374
SyntenyMC08g1374
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTCTCGTCATCAAACAAAATTAATACGTTGTGCAACGTTGGCGGGAGACATCTTCAGAGCCTTCATCAAATGTACAAAGTACCTACTCCTGCTCGTGGCCCTAGGCGTAGAGGACGACGTCAAGTAGACCAAGATGCTCCAGTAGGGCTTGACGATCCCGTACCTGAAGTTATCTATCATAGAGTTGAAGACATTCTACTGTTTACACAGACACATGATGATGCTGGTCCGTCCACGCCTATGATCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACCATCTAGAGGGAGCCATGGACGTGGACATGAAGAGCATGGACAATACTTCAACCCTACAGAGGATCGAGACCCTACAGAGGGTCAGGAGACACCAACGGCACCAATAGTTCGTCACCAGCCACATCGTAACCGACGACATCCCCATTGTGGG

mRNA sequence

ATTCTCTCGTCATCAAACAAAATTAATACGTTGTGCAACGTTGGCGGGAGACATCTTCAGAGCCTTCATCAAATGTACAAAGTACCTACTCCTGCTCGTGGCCCTAGGCGTAGAGGACGACGTCAAGTAGACCAAGATGCTCCAGTAGGGCTTGACGATCCCGTACCTGAAGTTATCTATCATAGAGTTGAAGACATTCTACTGTTTACACAGACACATGATGATGCTGGTCCGTCCACGCCTATGATCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACCATCTAGAGGGAGCCATGGACGTGGACATGAAGAGCATGGACAATACTTCAACCCTACAGAGGATCGAGACCCTACAGAGGGTCAGGAGACACCAACGGCACCAATAGTTCGTCACCAGCCACATCGTAACCGACGACATCCCCATTGTGGG

Coding sequence (CDS)

ATTCTCTCGTCATCAAACAAAATTAATACGTTGTGCAACGTTGGCGGGAGACATCTTCAGAGCCTTCATCAAATGTACAAAGTACCTACTCCTGCTCGTGGCCCTAGGCGTAGAGGACGACGTCAAGTAGACCAAGATGCTCCAGTAGGGCTTGACGATCCCGTACCTGAAGTTATCTATCATAGAGTTGAAGACATTCTACTGTTTACACAGACACATGATGATGCTGGTCCGTCCACGCCTATGATCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACCATCTAGAGGGAGCCATGGACGTGGACATGAAGAGCATGGACAATACTTCAACCCTACAGAGGATCGAGACCCTACAGAGGGTCAGGAGACACCAACGGCACCAATAGTTCGTCACCAGCCACATCGTAACCGACGACATCCCCATTGTGGG

Protein sequence

ILSSSNKINTLCNVGGRHLQSLHQMYKVPTPARGPRRRGRRQVDQDAPVGLDDPVPEVIYHRVEDILLFTQTHDDAGPSTPMIMIPTPGSSQYHTPSRGSHGRGHEEHGQYFNPTEDRDPTEGQETPTAPIVRHQPHRNRRHPHCG
Homology
BLAST of MC08g1374 vs. NCBI nr
Match: XP_022152034.1 (disease resistance protein RGA2-like [Momordica charantia])

HSP 1 Score: 115 bits (287), Expect = 1.88e-26
Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = 0

Query: 5   SNKINTLCNVGGRHLQSLHQMYKVPTPARGPRRRGRRQVDQDAPVGLDDPVPEVIYHRVE 64
           S +++TL    GRHLQ LHQMY+VP P     RRGRRQ++QDAP   + P PE IYH V+
Sbjct: 847 SCRVDTL-KYSGRHLQRLHQMYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVD 906

Query: 65  DILLFTQTHDDAGPSTPMIMIPTPGSSQYHTPSRGSH---GRGHEEHGQYFNPTEDRDPT 122
            +  F +T +D GP TPM+MIPTP SS  HTP +  +   G G  E+GQY NP ED+  +
Sbjct: 907 GVPPFIKTQNDVGPCTPMVMIPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTS 966

BLAST of MC08g1374 vs. NCBI nr
Match: XP_022149984.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 112 bits (281), Expect = 2.28e-26
Identity = 55/66 (83.33%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 25  MYKVPTPARGPRRRGRRQVDQDAPVGLDDPVPEVIYHRVEDILLFTQTHDDAGPSTPMIM 84
           MY V TPARGPR RGRRQVDQDAP+ LDDPVPEVIYH VEDI  FTQT DDAG STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

Query: 85  IPTPGS 90
           IPTPGS
Sbjct: 390 IPTPGS 395

BLAST of MC08g1374 vs. ExPASy TrEMBL
Match: A0A6J1DEU3 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019843 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 9.12e-27
Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = 0

Query: 5   SNKINTLCNVGGRHLQSLHQMYKVPTPARGPRRRGRRQVDQDAPVGLDDPVPEVIYHRVE 64
           S +++TL    GRHLQ LHQMY+VP P     RRGRRQ++QDAP   + P PE IYH V+
Sbjct: 847 SCRVDTL-KYSGRHLQRLHQMYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVD 906

Query: 65  DILLFTQTHDDAGPSTPMIMIPTPGSSQYHTPSRGSH---GRGHEEHGQYFNPTEDRDPT 122
            +  F +T +D GP TPM+MIPTP SS  HTP +  +   G G  E+GQY NP ED+  +
Sbjct: 907 GVPPFIKTQNDVGPCTPMVMIPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTS 966

BLAST of MC08g1374 vs. ExPASy TrEMBL
Match: A0A6J1D8N6 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018266 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.11e-26
Identity = 55/66 (83.33%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 25  MYKVPTPARGPRRRGRRQVDQDAPVGLDDPVPEVIYHRVEDILLFTQTHDDAGPSTPMIM 84
           MY V TPARGPR RGRRQVDQDAP+ LDDPVPEVIYH VEDI  FTQT DDAG STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

Query: 85  IPTPGS 90
           IPTPGS
Sbjct: 390 IPTPGS 395

BLAST of MC08g1374 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.82e-04
Identity = 30/96 (31.25%), Postives = 48/96 (50.00%), Query Frame = 0

Query: 1   ILSSSNKINTLCNVGGRHLQSLHQMYK---VPTPARGPRRRGRRQVDQDAPVGLDDPVPE 60
           +     ++  +CN   R+++ +H MY    VP P      RGR +V++     LD+    
Sbjct: 149 VADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVH----RGRVRVEE---AELDE---- 208

Query: 61  VIYHRVEDILLFTQTHDDAGPSTPMIMIPTPGSSQY 93
            +YH VE++   TQT    G  +PM M+PT G+  Y
Sbjct: 209 -VYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 232

BLAST of MC08g1374 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.97e-04
Identity = 30/96 (31.25%), Postives = 48/96 (50.00%), Query Frame = 0

Query: 1   ILSSSNKINTLCNVGGRHLQSLHQMYK---VPTPARGPRRRGRRQVDQDAPVGLDDPVPE 60
           +     ++  +CN   R+++ +H MY    VP P      RGR +V++     LD+    
Sbjct: 158 VADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVH----RGRVRVEE---AELDE---- 217

Query: 61  VIYHRVEDILLFTQTHDDAGPSTPMIMIPTPGSSQY 93
            +YH VE++   TQT    G  +PM M+PT G+  Y
Sbjct: 218 -VYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 241

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022152034.11.88e-2651.24disease resistance protein RGA2-like [Momordica charantia][more]
XP_022149984.12.28e-2683.33serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DEU39.12e-2751.24disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1D8N61.11e-2683.33serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A5D3CH238.82e-0431.25Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF88.97e-0431.25Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1374.1MC08g1374.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance