MC08g1357 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1357
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	MC08: 12923949 .. 12924029 (-)
RNA-Seq Expression	MC08g1357
Synteny	MC08g1357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACATTATGCACTTGTTACACAACAACCCTTTAGAGGAAGGGCCAAGCAAGGTGAACAACGGGTGGGAGAAATGAAGATC

mRNA sequence

GGACATTATGCACTTGTTACACAACAACCCTTTAGAGGAAGGGCCAAGCAAGGTGAACAACGGGTGGGAGAAATGAAGATC

Coding sequence (CDS)

GGACATTATGCACTTGTTACACAACAACCCTTTAGAGGAAGGGCCAAGCAAGGTGAACAACGGGTGGGAGAAATGAAGATC

Protein sequence

GHYALVTQQPFRGRAKQGEQRVGEMKI

Homology

[Close]

BLAST of MC08g1357 vs. ExPASy Swiss-Prot
Match: A9LYH7 (DNA-directed RNA polymerase subunit beta OS=Acorus americanus OX=263995 GN=rpoB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1    GHYALVTQQPFRGRAKQGEQRVGEMKI 28
            GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 977  GHYALVTQQPLRGRAKQGGQRVGEMEV 1003

[Close]

BLAST of MC08g1357 vs. ExPASy Swiss-Prot
Match: Q3V542 (DNA-directed RNA polymerase subunit beta OS=Acorus calamus OX=4465 GN=rpoB PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 28
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 965 GHYALVTQQPLRGRAKQGGQRVGEMEV 991

[Close]

BLAST of MC08g1357 vs. ExPASy Swiss-Prot
Match: Q5QA72 (DNA-directed RNA polymerase subunit beta OS=Acorus gramineus OX=55184 GN=rpoB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 28
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 965 GHYALVTQQPLRGRAKQGGQRVGEMEV 991

[Close]

BLAST of MC08g1357 vs. ExPASy Swiss-Prot
Match: P60282 (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda OX=13333 GN=rpoB PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 28
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 966 GHYALVTQQPLRGRAKQGGQRVGEMEV 992

[Close]

BLAST of MC08g1357 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 28
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 964 GHYALVTQQPLRGRAKQGGQRVGEMEV 990

[Close]

BLAST of MC08g1357 vs. NCBI nr
Match: BBN70082.1 (hypothetical protein Prudu_1405S000400 [Prunus dulcis])

HSP 1 Score: 50.8 bits (120), Expect = 1.15e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GHYALVTQQPFRGRAKQGEQRVGEMKI 27
          GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 12 GHYALVTQQPLRGRAKQGGQRVGEMEV 38

[Close]

BLAST of MC08g1357 vs. NCBI nr
Match: NLZ73073.1 (DNA-directed RNA polymerase subunit beta [Bacteroidales bacterium])

HSP 1 Score: 50.8 bits (120), Expect = 1.42e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GHYALVTQQPFRGRAKQGEQRVGEMKI 27
          GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 23 GHYALVTQQPLRGRAKQGGQRVGEMEV 49

[Close]

BLAST of MC08g1357 vs. NCBI nr
Match: THF98475.1 (hypothetical protein TEA_005970 [Camellia sinensis var. sinensis])

HSP 1 Score: 50.8 bits (120), Expect = 2.04e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 27
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 76  GHYALVTQQPLRGRAKQGGQRVGEMEV 102

[Close]

BLAST of MC08g1357 vs. NCBI nr
Match: RYR71192.1 (hypothetical protein Ahy_A02g005489 [Arachis hypogaea])

HSP 1 Score: 50.8 bits (120), Expect = 2.45e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 27
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 126 GHYALVTQQPLRGRAKQGGQRVGEMEV 152

[Close]

BLAST of MC08g1357 vs. NCBI nr
Match: THV56509.1 (DNA-directed RNA polymerase subunit beta, partial [Muricauda alvinocaridis])

HSP 1 Score: 50.8 bits (120), Expect = 2.65e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GHYALVTQQPFRGRAKQGEQRVGEMKI 27
          GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 64 GHYALVTQQPLRGRAKQGGQRVGEMEV 90

[Close]

BLAST of MC08g1357 vs. ExPASy TrEMBL
Match: A0A5H2XTM0 (DNA-directed RNA polymerase OS=Prunus dulcis OX=3755 GN=Prudu_1405S000400 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.58e-07
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GHYALVTQQPFRGRAKQGEQRVGEMKI 27
          GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 12 GHYALVTQQPLRGRAKQGGQRVGEMEV 38

[Close]

BLAST of MC08g1357 vs. ExPASy TrEMBL
Match: A0A7X8ZSZ9 (DNA-directed RNA polymerase subunit beta OS=Bacteroidales bacterium OX=2030927 GN=GX905_04560 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.85e-07
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GHYALVTQQPFRGRAKQGEQRVGEMKI 27
          GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 23 GHYALVTQQPLRGRAKQGGQRVGEMEV 49

[Close]

BLAST of MC08g1357 vs. ExPASy TrEMBL
Match: A0A3Q7J8Y1 (DNA-directed RNA polymerase OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.10e-07
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GHYALVTQQPFRGRAKQGEQRVGEMKI 27
          GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 68 GHYALVTQQPLRGRAKQGGQRVGEMEV 94

[Close]

BLAST of MC08g1357 vs. ExPASy TrEMBL
Match: A0A4S4DAD9 (DNA-directed RNA polymerase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_005970 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.86e-07
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 27
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 76  GHYALVTQQPLRGRAKQGGQRVGEMEV 102

[Close]

BLAST of MC08g1357 vs. ExPASy TrEMBL
Match: A0A445E6V2 (DNA-directed RNA polymerase OS=Arachis hypogaea OX=3818 GN=Ahy_A02g005489 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.19e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 27
           GHYALVTQQP RGRAKQG QRVGEM++
Sbjct: 126 GHYALVTQQPLRGRAKQGGQRVGEMEV 152

[Close]

BLAST of MC08g1357 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-07
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   GHYALVTQQPFRGRAKQGEQRVGEMKI 28
           GHYALVTQQP RGR+KQG QRVGEM++
Sbjct: 966 GHYALVTQQPLRGRSKQGGQRVGEMEV 992

The following BLAST results are available for this feature:

BLAST of MC08g1357 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYH7	2.1e-06	85.19	DNA-directed RNA polymerase subunit beta OS=Acorus americanus OX=263995 GN=rpoB ...	[more]
Q3V542	2.1e-06	85.19	DNA-directed RNA polymerase subunit beta OS=Acorus calamus OX=4465 GN=rpoB PE=3 ...	[more]
Q5QA72	2.1e-06	85.19	DNA-directed RNA polymerase subunit beta OS=Acorus gramineus OX=55184 GN=rpoB PE...	[more]
P60282	2.1e-06	85.19	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda OX=13333 GN=rpo...	[more]
Q8S8X9	2.1e-06	85.19	DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P...	[more]

BLAST of MC08g1357 vs. NCBI nr


Match Name	E-value	Identity	Description
BBN70082.1	1.15e-06	85.19	hypothetical protein Prudu_1405S000400 [Prunus dulcis]	[more]
NLZ73073.1	1.42e-06	85.19	DNA-directed RNA polymerase subunit beta [Bacteroidales bacterium]	[more]
THF98475.1	2.04e-06	85.19	hypothetical protein TEA_005970 [Camellia sinensis var. sinensis]	[more]
RYR71192.1	2.45e-06	85.19	hypothetical protein Ahy_A02g005489 [Arachis hypogaea]	[more]
THV56509.1	2.65e-06	85.19	DNA-directed RNA polymerase subunit beta, partial [Muricauda alvinocaridis]	[more]

BLAST of MC08g1357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5H2XTM0	5.58e-07	85.19	DNA-directed RNA polymerase OS=Prunus dulcis OX=3755 GN=Prudu_1405S000400 PE=3 S...	[more]
A0A7X8ZSZ9	6.85e-07	85.19	DNA-directed RNA polymerase subunit beta OS=Bacteroidales bacterium OX=2030927 G...	[more]
A0A3Q7J8Y1	7.10e-07	85.19	DNA-directed RNA polymerase OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
A0A4S4DAD9	9.86e-07	85.19	DNA-directed RNA polymerase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_...	[more]
A0A445E6V2	1.19e-06	85.19	DNA-directed RNA polymerase OS=Arachis hypogaea OX=3818 GN=Ahy_A02g005489 PE=3 S...	[more]

BLAST of MC08g1357 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	3.3e-07	81.48	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 1..24 e-value: 3.3E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1357.1	MC08g1357.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity