MC08g1284 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1284
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCytochrome c oxidase subunit 5C
LocationMC08: 11300217 .. 11300393 (+)
RNA-Seq ExpressionMC08g1284
SyntenyMC08g1284
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAAATGGTTGGTCATGCTGCATATAAGGGACCAAGCATAATAAAGGAGATTGTGTATGGATTAGGGCTGGCCTTAATGGCTGGTGGCCTCTGGAAAATGCGCCATTGGAATGAACAGAGGAGGACCAAAGAGTTTTATGAGTTACTCGACCGAGGTGACGTCGGGGTTGTAGTT

mRNA sequence

GGGAAAATGGTTGGTCATGCTGCATATAAGGGACCAAGCATAATAAAGGAGATTGTGTATGGATTAGGGCTGGCCTTAATGGCTGGTGGCCTCTGGAAAATGCGCCATTGGAATGAACAGAGGAGGACCAAAGAGTTTTATGAGTTACTCGACCGAGGTGACGTCGGGGTTGTAGTT

Coding sequence (CDS)

GGGAAAATGGTTGGTCATGCTGCATATAAGGGACCAAGCATAATAAAGGAGATTGTGTATGGATTAGGGCTGGCCTTAATGGCTGGTGGCCTCTGGAAAATGCGCCATTGGAATGAACAGAGGAGGACCAAAGAGTTTTATGAGTTACTCGACCGAGGTGACGTCGGGGTTGTAGTT

Protein sequence

GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV
Homology
BLAST of MC08g1284 vs. ExPASy Swiss-Prot
Match: Q9FLK2 (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana OX=3702 GN=At5g61310 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-18
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVV 61

BLAST of MC08g1284 vs. ExPASy Swiss-Prot
Match: Q9FNE0 (Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana OX=3702 GN=At5g40382 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-18
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 4  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          +G A YKGPS++KEI+YG+ L    GGLWKM HWN QRRTKEFY+LL++G++ VVV
Sbjct: 7  IGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVV 62

BLAST of MC08g1284 vs. ExPASy Swiss-Prot
Match: Q9LZQ0 (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-18
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVV 59
          G  V HA  KGPS++KE++ GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVV
Sbjct: 3  GHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVV 60

BLAST of MC08g1284 vs. ExPASy Swiss-Prot
Match: P19173 (Cytochrome c oxidase subunit 5C OS=Ipomoea batatas OX=4120 GN=COX5C PE=1 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVV 59
          G  V H  YKGPS++KE+V G  L L+AGG WKM HWN QRRTKEFY++L++G + VV
Sbjct: 3  GGHVAHLVYKGPSVVKELVIGFSLGLVAGGFWKMHHWNSQRRTKEFYDMLEKGQISVV 60

BLAST of MC08g1284 vs. ExPASy Swiss-Prot
Match: O22912 (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana OX=3702 GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVV 59
          G  V HA  KGPS++KE+  GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++ VV
Sbjct: 3  GHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

BLAST of MC08g1284 vs. NCBI nr
Match: XP_023528587.1 (putative cytochrome c oxidase subunit 5C-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (255), Expect = 3.38e-27
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 3  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          MVG+  YKGPS+IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+
Sbjct: 1  MVGNVVYKGPSVIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVL 57

BLAST of MC08g1284 vs. NCBI nr
Match: XP_022935291.1 (putative cytochrome c oxidase subunit 5C-4 [Cucurbita moschata] >XP_022935292.1 putative cytochrome c oxidase subunit 5C-4 [Cucurbita moschata])

HSP 1 Score: 102 bits (253), Expect = 6.83e-27
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 3  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          MVG   YKGPS+IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+
Sbjct: 1  MVGSVVYKGPSVIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVL 57

BLAST of MC08g1284 vs. NCBI nr
Match: XP_022983411.1 (putative cytochrome c oxidase subunit 5C-4 [Cucurbita maxima] >XP_022983412.1 putative cytochrome c oxidase subunit 5C-4 [Cucurbita maxima])

HSP 1 Score: 101 bits (251), Expect = 1.38e-26
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 3  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          MVG+  YKGPS IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+
Sbjct: 1  MVGNVVYKGPSAIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVL 57

BLAST of MC08g1284 vs. NCBI nr
Match: XP_011625043.1 (cytochrome c oxidase subunit 5C-like [Amborella trichopoda])

HSP 1 Score: 99.4 bits (246), Expect = 8.43e-26
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 4  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          +GH  YKGPSI+KEI YGL L L AGGLWKM HWNEQR+TKEFY+LL++G++GVVV
Sbjct: 6  IGHVVYKGPSIVKEICYGLTLGLFAGGLWKMHHWNEQRKTKEFYDLLEKGEIGVVV 61

BLAST of MC08g1284 vs. NCBI nr
Match: XP_042503015.1 (putative cytochrome c oxidase subunit 5C-4 [Macadamia integrifolia])

HSP 1 Score: 99.0 bits (245), Expect = 1.26e-25
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 4  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          +GHA Y+GPS++KEI+YG+ L LMAGGLWKM HWN QRRTKEFY+LL++GD+ VVV
Sbjct: 7  IGHAVYRGPSVVKEIIYGMTLGLMAGGLWKMYHWNVQRRTKEFYDLLEKGDINVVV 62

BLAST of MC08g1284 vs. ExPASy TrEMBL
Match: A0A6J1F554 (putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita moschata OX=3662 GN=LOC111442219 PE=3 SV=1)

HSP 1 Score: 102 bits (253), Expect = 3.31e-27
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 3  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          MVG   YKGPS+IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+
Sbjct: 1  MVGSVVYKGPSVIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVL 57

BLAST of MC08g1284 vs. ExPASy TrEMBL
Match: A0A6J1IZ83 (putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita maxima OX=3661 GN=LOC111482021 PE=3 SV=1)

HSP 1 Score: 101 bits (251), Expect = 6.68e-27
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 3  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          MVG+  YKGPS IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+
Sbjct: 1  MVGNVVYKGPSAIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVL 57

BLAST of MC08g1284 vs. ExPASy TrEMBL
Match: A0A200RDF8 (Cytochrome c oxidase subunit Vc OS=Macleaya cordata OX=56857 GN=BVC80_887g39 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.80e-25
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 6  HAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          H AYKGPSIIKEI+YGL L L+AGGLWKM HWN QRRTKEFY+LL++GD+ VVV
Sbjct: 10 HTAYKGPSIIKEIMYGLTLGLIAGGLWKMHHWNNQRRTKEFYDLLEKGDISVVV 63

BLAST of MC08g1284 vs. ExPASy TrEMBL
Match: M0ZI68 (Cytochrome c oxidase subunit 5C OS=Solanum tuberosum OX=4113 GN=102599311 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.90e-25
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          G  + HAAYKGPS++KEIV G+ L ++AGGLWKM HWN QRRTKEFY+LLD+ ++ VVV
Sbjct: 3  GSHIAHAAYKGPSVVKEIVIGIALGIVAGGLWKMHHWNNQRRTKEFYDLLDKNEISVVV 61

BLAST of MC08g1284 vs. ExPASy TrEMBL
Match: A0A2C9U871 (Cytochrome c oxidase subunit 5C OS=Manihot esculenta OX=3983 GN=MANES_17G114500 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.84e-24
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 4  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 59
          V H  YKGPSI+KEI+YGL L L AGGLWKM HWN QRR KEFY+LL+RG++ VVV
Sbjct: 6  VAHVVYKGPSIVKEILYGLALGLTAGGLWKMNHWNNQRRAKEFYDLLERGEISVVV 61

BLAST of MC08g1284 vs. TAIR 10
Match: AT5G61310.1 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 9.8e-20
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVV 61

BLAST of MC08g1284 vs. TAIR 10
Match: AT5G61310.2 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 9.8e-20
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVV 61

BLAST of MC08g1284 vs. TAIR 10
Match: AT5G61310.3 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 9.8e-20
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVV 61

BLAST of MC08g1284 vs. TAIR 10
Match: AT5G61310.4 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 9.8e-20
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 1  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVV 61

BLAST of MC08g1284 vs. TAIR 10
Match: AT5G40382.1 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-19
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 4  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVV 60
          +G A YKGPS++KEI+YG+ L    GGLWKM HWN QRRTKEFY+LL++G++ VVV
Sbjct: 7  IGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVV 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FLK21.4e-1864.41Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q9FNE01.8e-1864.29Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q9LZQ03.1e-1863.79Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 P... [more]
P191732.6e-1760.34Cytochrome c oxidase subunit 5C OS=Ipomoea batatas OX=4120 GN=COX5C PE=1 SV=3[more]
O229122.6e-1762.07Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Match NameE-valueIdentityDescription
XP_023528587.13.38e-2777.19putative cytochrome c oxidase subunit 5C-4 [Cucurbita pepo subsp. pepo][more]
XP_022935291.16.83e-2777.19putative cytochrome c oxidase subunit 5C-4 [Cucurbita moschata] >XP_022935292.1 ... [more]
XP_022983411.11.38e-2677.19putative cytochrome c oxidase subunit 5C-4 [Cucurbita maxima] >XP_022983412.1 pu... [more]
XP_011625043.18.43e-2673.21cytochrome c oxidase subunit 5C-like [Amborella trichopoda][more]
XP_042503015.11.26e-2571.43putative cytochrome c oxidase subunit 5C-4 [Macadamia integrifolia][more]
Match NameE-valueIdentityDescription
A0A6J1F5543.31e-2777.19putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1IZ836.68e-2777.19putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A200RDF81.80e-2577.78Cytochrome c oxidase subunit Vc OS=Macleaya cordata OX=56857 GN=BVC80_887g39 PE=... [more]
M0ZI689.90e-2566.10Cytochrome c oxidase subunit 5C OS=Solanum tuberosum OX=4113 GN=102599311 PE=3 S... [more]
A0A2C9U8712.84e-2471.43Cytochrome c oxidase subunit 5C OS=Manihot esculenta OX=3983 GN=MANES_17G114500 ... [more]
Match NameE-valueIdentityDescription
AT5G61310.19.8e-2064.41Cytochrome c oxidase subunit Vc family protein [more]
AT5G61310.29.8e-2064.41Cytochrome c oxidase subunit Vc family protein [more]
AT5G61310.39.8e-2064.41Cytochrome c oxidase subunit Vc family protein [more]
AT5G61310.49.8e-2064.41Cytochrome c oxidase subunit Vc family protein [more]
AT5G40382.11.3e-1964.29Cytochrome c oxidase subunit Vc family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008432Cytochrome c oxidase subunit 5cPANTHERPTHR34372CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATEDcoord: 2..59
NoneNo IPR availablePANTHERPTHR34372:SF3CYTOCHROME C OXIDASE SUBUNIT 5C-4-RELATEDcoord: 2..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1284.1MC08g1284.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005746 mitochondrial respirasome