MC08g1242 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1242
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	MC08: 10778345 .. 10778545 (-)
RNA-Seq Expression	MC08g1242
Synteny	MC08g1242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAAGGCCGTCCCTTGCCGAAATTCGGCGAGTGGGATGTCAACAATCCGGCCTCAGCCGAAGGCTTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCACCTGGGAATAAAGCAGCAAAAAACAATACCAGACCAGAACAAGATTATGACTATCCCCCAATGGTAACCAACTTACTTTTCCCT

mRNA sequence

GATAAAGGCCGTCCCTTGCCGAAATTCGGCGAGTGGGATGTCAACAATCCGGCCTCAGCCGAAGGCTTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCACCTGGGAATAAAGCAGCAAAAAACAATACCAGACCAGAACAAGATTATGACTATCCCCCAATGGTAACCAACTTACTTTTCCCT

Coding sequence (CDS)

GATAAAGGCCGTCCCTTGCCGAAATTCGGCGAGTGGGATGTCAACAATCCGGCCTCAGCCGAAGGCTTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCACCTGGGAATAAAGCAGCAAAAAACAATACCAGACCAGAACAAGATTATGACTATCCCCCAATGGTAACCAACTTACTTTTCCCT

Protein sequence

DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNNTRPEQDYDYPPMVTNLLFP

Homology

[Close]

BLAST of MC08g1242 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-14
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN 43
          DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+   PG+
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

[Close]

BLAST of MC08g1242 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKS 37
           +K   +PKFG+WD NNP+SA+G+T IF+K R+E+ S
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSS 178

[Close]

BLAST of MC08g1242 vs. NCBI nr
Match: KAG7017799.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (299), Expect = 1.16e-33
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNN-TRPEQDYDYPP 60
          D+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN AAKNN +RPE++Y Y P
Sbjct: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQYSP 63

Query: 61 MVTNLLF 66
          MV+NL++
Sbjct: 64 MVSNLIY 70

[Close]

BLAST of MC08g1242 vs. NCBI nr
Match: XP_038883820.1 (protein NOI4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 112 bits (279), Expect = 1.68e-30
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNNT-RPEQDYDYPP 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN  AKNNT RPE++Y Y P
Sbjct: 12 DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTGAKNNTSRPEENYQYSP 71

[Close]

BLAST of MC08g1242 vs. NCBI nr
Match: XP_038883812.1 (protein NOI4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 112 bits (279), Expect = 2.82e-30
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNNT-RPEQDYDYPP 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN  AKNNT RPE++Y Y P
Sbjct: 30 DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTGAKNNTSRPEENYQYSP 89

[Close]

BLAST of MC08g1242 vs. NCBI nr
Match: KAG6581070.1 (Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (276), Expect = 7.40e-30
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNN-TRPEQDYDYPP 60
          D+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN AAKNN +RPE++Y Y P
Sbjct: 27 DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQYSP 86

[Close]

BLAST of MC08g1242 vs. NCBI nr
Match: KGN58221.1 (hypothetical protein Csa_017629 [Cucumis sativus])

HSP 1 Score: 108 bits (270), Expect = 3.18e-29
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNNT-RPEQDYDYPP 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN AAK+NT R E++Y Y P
Sbjct: 4  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQYSP 63

[Close]

BLAST of MC08g1242 vs. ExPASy TrEMBL
Match: A0A0A0LDP9 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G595220 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 1.54e-29
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNNT-RPEQDYDYPP 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN AAK+NT R E++Y Y P
Sbjct: 4  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQYSP 63

[Close]

BLAST of MC08g1242 vs. ExPASy TrEMBL
Match: A0A5D3E371 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00620 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.12e-29
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAKNNT-RPEQDYDYPP 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN AAK+NT R E++Y Y P
Sbjct: 21 DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQYSP 80

[Close]

BLAST of MC08g1242 vs. ExPASy TrEMBL
Match: W9S8M1 (AvrRpt-cleavage domain-containing protein OS=Morus notabilis OX=981085 GN=L484_017683 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.04e-24
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNKAAK-------NNTRPEQ 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN    +  A        N+ +P +
Sbjct: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNGVVSSSGATTTTQKNDNSAKPSE 64

Query: 61 DYDYPPMVT 62
          + DYPPMVT
Sbjct: 65 NCDYPPMVT 73

[Close]

BLAST of MC08g1242 vs. ExPASy TrEMBL
Match: A0A2P5B5J0 (RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Parasponia andersonii OX=3476 GN=PanWU01x14_269930 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.78e-24
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPG----NKAAKNNT---RPEQ 60
          DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN A G    N+   NN+   +P +
Sbjct: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNGAAGSGTTNQKNDNNSANNKPGE 64

[Close]

BLAST of MC08g1242 vs. ExPASy TrEMBL
Match: A0A2P5FBR6 (RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Trema orientale OX=63057 GN=TorRG33x02_087590 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.35e-23
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPG----NKAAKNNT---RPEQ 60
          +KGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN A G    N+   NN+   +P +
Sbjct: 5  EKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNGAAGSGTTNQKNDNNSANNKPGE 64

[Close]

BLAST of MC08g1242 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN 43
          DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+   PG+
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

[Close]

BLAST of MC08g1242 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN 43
          DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+   PG+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]

BLAST of MC08g1242 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN 43
          DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+   PG+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]

BLAST of MC08g1242 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-14
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPG 42
          +KG+PLPKFGEWDVNNPASAEGFTVIFSKA DEKK+ +A G
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASG 44

[Close]

BLAST of MC08g1242 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKK---SNEAPGNKAAKNNTRPE 53
          DKGRPLPKFGEWDVN+P+SAEGFTVIF+KAR+EKK    +++PG      N   E
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGE 57

The following BLAST results are available for this feature:

BLAST of MC08g1242 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	5.2e-14	83.33	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	1.2e-05	55.56	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of MC08g1242 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017799.1	1.16e-33	83.58	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038883820.1	1.68e-30	88.52	protein NOI4-like isoform X2 [Benincasa hispida]	[more]
XP_038883812.1	2.82e-30	88.52	protein NOI4-like isoform X1 [Benincasa hispida]	[more]
KAG6581070.1	7.40e-30	86.89	Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN58221.1	3.18e-29	86.89	hypothetical protein Csa_017629 [Cucumis sativus]	[more]

BLAST of MC08g1242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDP9	1.54e-29	86.89	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G59...	[more]
A0A5D3E371	3.12e-29	86.89	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
W9S8M1	5.04e-24	68.12	AvrRpt-cleavage domain-containing protein OS=Morus notabilis OX=981085 GN=L484_0...	[more]
A0A2P5B5J0	5.78e-24	73.13	RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Parasp...	[more]
A0A2P5FBR6	2.35e-23	71.64	RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Trema ...	[more]

BLAST of MC08g1242 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55850.1	3.7e-15	83.33	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.7e-15	83.33	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	3.7e-15	83.33	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.8e-14	82.93	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	5.9e-13	63.64	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 1..36 e-value: 3.6E-23 score: 80.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..67
None	No IPR available	PANTHER	PTHR33159:SF39	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..48
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1242.1	MC08g1242.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane