MC08g1228 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1228
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	54S ribosomal protein L37, mitochondrial-like
Location	MC08: 10586823 .. 10589583 (-)
RNA-Seq Expression	MC08g1228
Synteny	MC08g1228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGGGACTAAATTGAAACTTTGATAATTATGCGGACCAAATTGAAACTAAATCGACACTCAAGTGGGACTAAATTGAAAAGATTATTATAGCCCATATAAGAGAGCCTCTAAGGCCGAAAGCCCAATTAGAGCTCCATTGTCACTGGTCCTCCTTCATCCTCAGATTCAGCCCTAAACCATCTGCCGTTCCTCTCCTTTCTGCCATTTTTGAACTCACAAAGCTCGAATTCTCTGAATCAAGCTCCATCAACACTACTGCTTTCTTCCCCGTCATCTCTAGGTATCTTCATCGTCACCCTCTTCGTCGTCATCTTATTCCTTTTTTTTTTCTTATTTCTTTACGATCAATGCATTTCTCTCATTGTCATATTTGGAATGAAAGTTGGTTTTCCCACAACATACGAATTATTCTTATTCTGGATTCTTATATCTTCTTGTTTAAGTATGCATTGAATTGAATCTCAGTTTGCCTTGCGGAATAGGGTTCTCGCTCTTTACCAATTTCTGTTTTTCTTTCTTTCGTGATGGAATGAAATTCGGACTTGAATTGTGTACGTCTGGGTTGGTTGAAGTATAATTTGTGTTATTTCCAAGTGCTCCTTTGTTTTCAGGACTACTAAAATATGATGTAATTCAGTAATTGGTTGGTTTATAATTGGATAATTAAGTGATGTGATATAGTAATTTGAAATTGGATGCTTGTTTTTATCTTAGTCGCAGCTTCACCCAATTTGAGAAGATAATTTGGTTGCATATTGCTAAATATTATCAGACTTCAATTCGATTAGAGTTTGGAATTTTGATTTATCGGGGTAAATTTCTCTATGGTTTAGGTATTAGTTGAAGATAAAACACGTTTTAGATTTCCTCCTTTAAACCCCATAACTTGAGTTGTTGGGCTAGGGATTCTTAAAACTCCCCTTTACGTCTACCCTTGAGTATTGGTTTGATTCACGTGGCCGAACTTGTAAACTTGTAAACCAGTAAACCATAAATATGTGATAGGCTCCAGTGAAGAAAGTGTATTCGAGAAAGAGAGGATGAGAGCGTGGGGCGTATGGGTATTTTGTTAGTAGGTACTAGCGGACCTTAGTTTAGTTTCTTAAGCGGGTTATATGGGTATTTTGTAAATACGGTAAATACACCCATGGTAGAAGGTCGGGGTATATTTCTGTCAGTTTGTTTAAGGACTGTTTGGGAGAGGCACTGGAGCTCTCTAATTCTTGCTTGGCCCATTGTAATGCCTTCGGAATAGAAGAGAGTTCTATCATTTTGAAGTTATATGCTTAGGATCTCATATTCTAACACTTATGTTAAATCAGATCTTAGTTTAAGCTGTTAAAGTAGGAATTAATAGATAGTCTGTTTCATGATAATGGTATATGTATTGCAGAAGAAAATATGGCTATGAGCCAATCTAGATTATTTAGAAGCATTATCAATGCCAAAGATGCAATCAAAGTGACGTCTGTGAGAACATTTGCTGCTGGAGGTAAAAAGAAGGGCTCTAAAGGCGGTGCGGCTGCTGATGGTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTTCCACTGTTGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTTATGGCAGACTCGGAGTACCCCGATTGGCTGTGGCGTTTGATCGATAAACATCCAGCTCTGAGTGAATTACGCAGGAAGAATGTCGAAGCCCTTCCCTACGAGGATCTGAAACGATTCGTTAAACTGGATAATCGAGCAAGTATTAAGGAAAACAACTCTATTAAGGCCAAGAATTGATGTAAGAATCTAGCATAGGCTTTTGTTAATGTAATGCAGCTCCTTTCTTCCCACAATTATATATGATTAACTTTGGTCCTTTTTTTTTTGTTTTACACCTACCCTCACCCCCGCAACGACCTTCGACCGTTCGACTTAGTCTTTGAGTGCTGGATTAGTGATATCATGTCATGGAAACACGATAAGGTCGTAGTCTTGTACTGTAGAATGATTATCAATAACTAGCAAGCCTCATCTCTGATCTCTGCCTTGCCTATCACATTTTCACCTTTTTTGCATTATTTCTCTCTTGAAAGTCTATTCTGATGCCTACTTTCTGTTAGTTTCTGCAAGAATGGTCAAAACCCGAGCAGCACGGCGCCAAGTGGATAGAATCTATAAACACAAACCAATCTTGTTGTGACCCTTTACTTCTGCAGAAAAAAGAGAGTTAGGAGTCGAGTCAATCTCCTGAAAGCATCATGTGGAAGGAAGAACAAGCAAAACTGCAACAGCTTAACAGACACAAGGTATTTTAGATCTGTAAGCCACTATCCTATTGTCAAAAAAGCACAAAACTTCTGATTTACTACACATTCTTTAGTTGAATGAGAACGGATGCTGACGCACGATTCACACGTCAGTATTGCAGTGGGCCACCATCAAAGTTTCATCTGCTTCGTCCCACTCAAGCATAGTTTACCATCTTTCGGGTCCCAACAGCCATAAAGCCATAATTCTTTAATTGAATGAGAACATAAACTTGGATGATTCTTTTCATCATCGAAACCTTGAATTGTCAAAATTTTGAATGCGTACGGAATACTTTTATGTCCCACTAGATAATTTTATATCTCACCTTTTTTTTTTTAATAAATATAAAAATGAGCATCATATAGTTAACATTGTTAGGTGTGGTTGATGCTTCAAGTGGTTGTATTTGTGTCCACATGGTTGATAATGATAAGTCAACTTTCTTGTCC

mRNA sequence

ACAGGGACTAAATTGAAACTTTGATAATTATGCGGACCAAATTGAAACTAAATCGACACTCAAGTGGGACTAAATTGAAAAGATTATTATAGCCCATATAAGAGAGCCTCTAAGGCCGAAAGCCCAATTAGAGCTCCATTGTCACTGGTCCTCCTTCATCCTCAGATTCAGCCCTAAACCATCTGCCGTTCCTCTCCTTTCTGCCATTTTTGAACTCACAAAGCTCGAATTCTCTGAATCAAGCTCCATCAACACTACTGCTTTCTTCCCCGTCATCTCTAGAAGAAAATATGGCTATGAGCCAATCTAGATTATTTAGAAGCATTATCAATGCCAAAGATGCAATCAAAGTGACGTCTGTGAGAACATTTGCTGCTGGAGGTAAAAAGAAGGGCTCTAAAGGCGGTGCGGCTGCTGATGGTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTTCCACTGTTGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTTATGGCAGACTCGGAGTACCCCGATTGGCTGTGGCGTTTGATCGATAAACATCCAGCTCTGAGTGAATTACGCAGGAAGAATGTCGAAGCCCTTCCCTACGAGGATCTGAAACGATTCGTTAAACTGGATAATCGAGCAAGTATTAAGGAAAACAACTCTATTAAGGCCAAGAATTGATGTAAGAATCTAGCATAGGCTTTTGTTAATGTAATGCAGCTCCTTTCTTCCCACAATTATATATGATTAACTTTGGTCCTTTTTTTTTTGTTTTACACCTACCCTCACCCCCGCAACGACCTTCGACCGTTCGACTTAGTCTTTGAGTGCTGGATTAGTGATATCATGTCATGGAAACACGATAAGGTCGTAGTCTTGTACTGTAGAATGATTATCAATAACTAGCAAGCCTCATCTCTGATCTCTGCCTTGCCTATCACATTTTCACCTTTTTTGCATTATTTCTCTCTTGAAAGTCTATTCTGATGCCTACTTTCTGTTAGTTTCTGCAAGAATGGTCAAAACCCGAGCAGCACGGCGCCAAGTGGATAGAATCTATAAACACAAACCAATCTTGTTGTGACCCTTTACTTCTGCAGAAAAAAGAGAGTTAGGAGTCGAGTCAATCTCCTGAAAGCATCATGTGGAAGGAAGAACAAGCAAAACTGCAACAGCTTAACAGACACAAGTATTGCAGTGGGCCACCATCAAAGTTTCATCTGCTTCGTCCCACTCAAGCATAGTTTACCATCTTTCGGGTCCCAACAGCCATAAAGCCATAATTCTTTAATTGAATGAGAACATAAACTTGGATGATTCTTTTCATCATCGAAACCTTGAATTGTCAAAATTTTGAATGCGTACGGAATACTTTTATGTCCCACTAGATAATTTTATATCTCACCTTTTTTTTTTTAATAAATATAAAAATGAGCATCATATAGTTAACATTGTTAGGTGTGGTTGATGCTTCAAGTGGTTGTATTTGTGTCCACATGGTTGATAATGATAAGTCAACTTTCTTGTCC

Coding sequence (CDS)

ATGGCTATGAGCCAATCTAGATTATTTAGAAGCATTATCAATGCCAAAGATGCAATCAAAGTGACGTCTGTGAGAACATTTGCTGCTGGAGGTAAAAAGAAGGGCTCTAAAGGCGGTGCGGCTGCTGATGGTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTTCCACTGTTGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTTATGGCAGACTCGGAGTACCCCGATTGGCTGTGGCGTTTGATCGATAAACATCCAGCTCTGAGTGAATTACGCAGGAAGAATGTCGAAGCCCTTCCCTACGAGGATCTGAAACGATTCGTTAAACTGGATAATCGAGCAAGTATTAAGGAAAACAACTCTATTAAGGCCAAGAATTGA

Protein sequence

MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRASIKENNSIKAKN

Homology

[Close]

BLAST of MC08g1228 vs. ExPASy Swiss-Prot
Match: Q9CPW3 (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.5e-04
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 23 SVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSST--VVGANILKEGADPKVMADSEYP 82
          S+R +A     KG KGG AA+  K   +  +    T   +G NI KEG D  + ADSEYP
Sbjct: 31 SIREYAKKPVGKGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYP 90

Query: 83 DWLWRL 87
           WL+++
Sbjct: 91 TWLFQV 96

[Close]

BLAST of MC08g1228 vs. NCBI nr
Match: XP_022154133.1 (54S ribosomal protein L37, mitochondrial-like [Momordica charantia])

HSP 1 Score: 247 bits (631), Expect = 2.44e-82
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV
Sbjct: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS
Sbjct: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120

Query: 121 IKENNSIKAKN 131
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MC08g1228 vs. NCBI nr
Match: XP_022989738.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 212 bits (539), Expect = 2.69e-68
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MAMSQSRLFR-SIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTV 60
           MAMSQ RLFR S++N KD IK+T+VRTFAAGGKKKGSKGGAA D PKASILSKEVKS+TV
Sbjct: 1   MAMSQIRLFRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGAATDAPKASILSKEVKSTTV 60

Query: 61  VGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 120
           VGANILKEGADPKVMADSEYPDWLWRLIDK PALSELRRK+ + LPYEDLKRFVKLD RA
Sbjct: 61  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 120

Query: 121 SIKENNSIKAKN 131
            IKENNS KAKN
Sbjct: 121 RIKENNSSKAKN 132

[Close]

BLAST of MC08g1228 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 204 bits (519), Expect = 3.11e-65
Identity = 111/133 (83.46%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MAMSQSRLFR-SIINAKDAIKVTSVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSST 60
           M MSQ RLFR SI+N+KD I++TSVRTFAAGGK KKGSKGGAAAD PKAS LSKEVKS+T
Sbjct: 1   MVMSQIRLFRRSIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKSTT 60

Query: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADPK+MADSEYP WLW L+DKHP LSELRRKNVE LPY DLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDTR 120

Query: 121 ASIKENNSIKAKN 131
           A IKENNS KAKN
Sbjct: 121 AKIKENNSTKAKN 133

[Close]

BLAST of MC08g1228 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 204 bits (519), Expect = 4.04e-65
Identity = 111/133 (83.46%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MAMSQSRLFR-SIINAKDAIKVTSVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSST 60
           M MSQ RLFR SI+N+KD I++TSVRTFAAGGK KKGSKGGAAAD PKAS LSKEVKS+T
Sbjct: 9   MVMSQIRLFRRSIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKSTT 68

Query: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADPK+MADSEYP WLW L+DKHP LSELRRKNVE LPY DLKRFVKLD R
Sbjct: 69  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDTR 128

Query: 121 ASIKENNSIKAKN 131
           A IKENNS KAKN
Sbjct: 129 AKIKENNSTKAKN 141

[Close]

BLAST of MC08g1228 vs. NCBI nr
Match: XP_022928329.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 203 bits (516), Expect = 8.91e-65
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MAMSQSRLFR-SIINAKDAIKVTSVRTFAAGGKKKGSKGGAAA-DGPKASILSKEVKSST 60
           MAMSQ RL R S++N KD IK+T+VRTFAAGGKKKGSKGG AA D PKASILSKEVKS+T
Sbjct: 1   MAMSQIRLVRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTT 60

Query: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADPKVMADSEYPDWLWRLIDK PALSEL+RK+ + LPYEDLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDTR 120

Query: 121 ASIKENNSIKAKN 131
           A IKENNS KAKN
Sbjct: 121 ARIKENNSSKAKN 133

[Close]

BLAST of MC08g1228 vs. ExPASy TrEMBL
Match: A0A6J1DJG1 (54S ribosomal protein L37, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111021461 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 1.18e-82
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV
Sbjct: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS
Sbjct: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120

Query: 121 IKENNSIKAKN 131
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MC08g1228 vs. ExPASy TrEMBL
Match: A0A6J1JQ61 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111486735 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 1.30e-68
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MAMSQSRLFR-SIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTV 60
           MAMSQ RLFR S++N KD IK+T+VRTFAAGGKKKGSKGGAA D PKASILSKEVKS+TV
Sbjct: 1   MAMSQIRLFRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGAATDAPKASILSKEVKSTTV 60

Query: 61  VGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 120
           VGANILKEGADPKVMADSEYPDWLWRLIDK PALSELRRK+ + LPYEDLKRFVKLD RA
Sbjct: 61  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 120

Query: 121 SIKENNSIKAKN 131
            IKENNS KAKN
Sbjct: 121 RIKENNSSKAKN 132

[Close]

BLAST of MC08g1228 vs. ExPASy TrEMBL
Match: A0A6J1EKI4 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435190 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 4.31e-65
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MAMSQSRLFR-SIINAKDAIKVTSVRTFAAGGKKKGSKGGAAA-DGPKASILSKEVKSST 60
           MAMSQ RL R S++N KD IK+T+VRTFAAGGKKKGSKGG AA D PKASILSKEVKS+T
Sbjct: 1   MAMSQIRLVRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTT 60

Query: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADPKVMADSEYPDWLWRLIDK PALSEL+RK+ + LPYEDLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDTR 120

Query: 121 ASIKENNSIKAKN 131
           A IKENNS KAKN
Sbjct: 121 ARIKENNSSKAKN 133

[Close]

BLAST of MC08g1228 vs. ExPASy TrEMBL
Match: A0A7J6EZF4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_013579 PE=4 SV=1)

HSP 1 Score: 198 bits (503), Expect = 3.87e-63
Identity = 106/131 (80.92%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAM+ +RLFRS I   D +     RTFAAG KKKG+KGGAA D PKASILSKEVKSSTVV
Sbjct: 1   MAMNHARLFRSRIVGNDEVSSVFRRTFAAGAKKKGAKGGAAGDAPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADPKV+ADSEYPDWL+ LIDK PALSELRR+NVE LPYEDLKRFVKLDNRA 
Sbjct: 61  GANILKEGADPKVLADSEYPDWLFHLIDKRPALSELRRRNVETLPYEDLKRFVKLDNRAR 120

Query: 121 IKENNSIKAKN 131
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MC08g1228 vs. ExPASy TrEMBL
Match: A0A803R7Z3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 198 bits (503), Expect = 3.87e-63
Identity = 106/131 (80.92%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAM+ +RLFRS I   D +     RTFAAG KKKG+KGGAA D PKASILSKEVKSSTVV
Sbjct: 1   MAMNHARLFRSRIVGNDEVSSVFRRTFAAGAKKKGAKGGAAGDAPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADPKV+ADSEYPDWL+ LIDK PALSELRR+NVE LPYEDLKRFVKLDNRA 
Sbjct: 61  GANILKEGADPKVLADSEYPDWLFHLIDKRPALSELRRRNVETLPYEDLKRFVKLDNRAR 120

Query: 121 IKENNSIKAKN 131
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MC08g1228 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 162.2 bits (409), Expect = 2.9e-40
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 14  NAKDAIKVTSVRTFAAGGK--KKGSKGGAAADGPKASILSKEVKSSTVVGANILKEGADP 73
           ++KD ++    RTFAA     KKG KGG A+D PK S L+KE+KS+TVVGAN LK+G+DP
Sbjct: 11  SSKDVVR----RTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTTVVGANTLKDGSDP 70

Query: 74  KVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRASIKENNSIKAKN 132
           K++ DS+YPDWLW L+DK PALSELRRKNVE LPY+DLKRFVKLD R  IKENNSIKAKN
Sbjct: 71  KILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRGKIKENNSIKAKN 126

[Close]

BLAST of MC08g1228 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-34
Identity = 80/132 (60.61%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 3   MSQSRLF-RSIINAKDAIKVTSVRTF--AAGGKKKGSKGGAAADGPKASILSKEVKSSTV 62
           M+  R+F  SI  +KD ++    RTF  AAG  KK  +G    D PKAS LSKE+KSS V
Sbjct: 1   MNLIRMFGDSISRSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSMV 60

Query: 63  VGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 122
           V AN LK+G DPK++ +S++PD+LW L+DK PALSELRRKNVE L ++DLKRFVKLD RA
Sbjct: 61  VSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTRA 120

Query: 123 SIKENNSIKAKN 132
            IKEN+SIKAKN
Sbjct: 121 RIKENHSIKAKN 132

The following BLAST results are available for this feature:

BLAST of MC08g1228 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CPW3	9.5e-04	40.91	39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1...	[more]

BLAST of MC08g1228 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154133.1	2.44e-82	100.00	54S ribosomal protein L37, mitochondrial-like [Momordica charantia]	[more]
XP_022989738.1	2.69e-68	85.61	54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1...	[more]
XP_038883607.1	3.11e-65	83.46	54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_038883606.1	4.04e-65	83.46	39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_022928329.1	8.91e-65	83.46	54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331...	[more]

BLAST of MC08g1228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJG1	1.18e-82	100.00	54S ribosomal protein L37, mitochondrial-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1JQ61	1.30e-68	85.61	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EKI4	4.31e-65	83.46	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A7J6EZF4	3.87e-63	80.92	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_013579 PE=4 SV=1	[more]
A0A803R7Z3	3.87e-63	80.92	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MC08g1228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01740.1	2.9e-40	68.33	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	1.1e-34	60.61	Mitochondrial ribosomal protein L37	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 51..90 e-value: 4.6E-12 score: 46.5
IPR013870	Ribosomal protein L37, mitochondrial	PANTHER	PTHR28595	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 1..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1228.1	MC08g1228.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome