MC08g1119 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1119
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Adenosylmethionine decarboxylase
Location	MC08: 9372041 .. 9372184 (+)
RNA-Seq Expression	MC08g1119
Synteny	MC08g1119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTAAAGGTGGCAAGAAGAAGTCTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTA

mRNA sequence

ATGGAGTCTAAAGGTGGCAAGAAGAAGTCTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTA

Coding sequence (CDS)

ATGGAGTCTAAAGGTGGCAAGAAGAAGTCTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTA

Protein sequence

MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV

Homology

[Close]

BLAST of MC08g1119 vs. NCBI nr
Match: XP_016902719.1 (PREDICTED: uncharacterized protein LOC107990274 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 9.36e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47
          MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47

[Close]

BLAST of MC08g1119 vs. NCBI nr
Match: RDX90779.1 (hypothetical protein CR513_27324, partial [Mucuna pruriens])

HSP 1 Score: 89.7 bits (221), Expect = 4.99e-22
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 48
          MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSNV
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSNV 48

[Close]

BLAST of MC08g1119 vs. NCBI nr
Match: KAG6581173.1 (hypothetical protein SDJN03_21175, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 6.16e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1   MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47
           MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 71  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 117

[Close]

BLAST of MC08g1119 vs. NCBI nr
Match: KYP35634.1 (hypothetical protein KK1_043309, partial [Cajanus cajan])

HSP 1 Score: 89.4 bits (220), Expect = 6.37e-22
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 48
          MESKGGKKKSSSSSSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSNV
Sbjct: 7  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNV 54

[Close]

BLAST of MC08g1119 vs. NCBI nr
Match: KRH75225.1 (hypothetical protein GLYMA_01G071400v4 [Glycine max])

HSP 1 Score: 88.2 bits (217), Expect = 1.10e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47
          MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSN
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC08g1119 vs. ExPASy TrEMBL
Match: A0A1S4E3B1 (uncharacterized protein LOC107990274 OS=Cucumis melo OX=3656 GN=LOC107990274 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.53e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47
          MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47

[Close]

BLAST of MC08g1119 vs. ExPASy TrEMBL
Match: A0A371GJN6 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_27324 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.42e-22
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 48
          MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSNV
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSNV 48

[Close]

BLAST of MC08g1119 vs. ExPASy TrEMBL
Match: A0A151QZ93 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043309 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.08e-22
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 48
          MESKGGKKKSSSSSSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSNV
Sbjct: 7  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNV 54

[Close]

BLAST of MC08g1119 vs. ExPASy TrEMBL
Match: I1J697 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G071400 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.31e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47
          MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSN
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC08g1119 vs. ExPASy TrEMBL
Match: Q3ZM65 (Putative SAMDC uORF OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G044300g PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.55e-22
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47
          MESKGGKKKSSSSSSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSN
Sbjct: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC08g1119 vs. TAIR 10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11 )

HSP 1 Score: 79.3 bits (194), Expect = 9.1e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSK-SLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 49
          ME+KGGKKKSS+SSS+ SLF+EAPL YSIEDVRP+GGIKKFRSAAYSN+
Sbjct: 1  METKGGKKKSSNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNI 49

[Close]

BLAST of MC08g1119 vs. TAIR 10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9 )

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 48
          MESKGGKKKSSSSS  SLFYEAPLGYSIEDVRP+GGIKKF+S+ YSN
Sbjct: 2  MESKGGKKKSSSSS--SLFYEAPLGYSIEDVRPNGGIKKFKSSVYSN 46

[Close]

BLAST of MC08g1119 vs. TAIR 10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10 )

HSP 1 Score: 69.7 bits (169), Expect = 7.2e-13
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MESKGGKKKSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 48
          MESK G KKSSS+S  SL YEAPLGYSIEDVRP GGIKKF+S+ YSN
Sbjct: 1  MESKAGNKKSSSNS--SLCYEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

The following BLAST results are available for this feature:

BLAST of MC08g1119 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902719.1	9.36e-23	100.00	PREDICTED: uncharacterized protein LOC107990274 [Cucumis melo]	[more]
RDX90779.1	4.99e-22	97.92	hypothetical protein CR513_27324, partial [Mucuna pruriens]	[more]
KAG6581173.1	6.16e-22	100.00	hypothetical protein SDJN03_21175, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KYP35634.1	6.37e-22	95.83	hypothetical protein KK1_043309, partial [Cajanus cajan]	[more]
KRH75225.1	1.10e-21	97.87	hypothetical protein GLYMA_01G071400v4 [Glycine max]	[more]

BLAST of MC08g1119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E3B1	4.53e-23	100.00	uncharacterized protein LOC107990274 OS=Cucumis melo OX=3656 GN=LOC107990274 PE=...	[more]
A0A371GJN6	2.42e-22	97.92	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_27324 P...	[more]
A0A151QZ93	3.08e-22	95.83	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043309 PE=4 S...	[more]
I1J697	5.31e-22	97.87	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G071400 PE=4 SV=1	[more]
Q3ZM65	7.55e-22	95.74	Putative SAMDC uORF OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G044300g PE=2 SV=1	[more]

BLAST of MC08g1119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25572.1	9.1e-16	83.67	conserved peptide upstream open reading frame 11	[more]
AT3G02468.1	1.2e-15	87.23	conserved peptide upstream open reading frame 9	[more]
AT5G15948.1	7.2e-13	78.72	conserved peptide upstream open reading frame 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 1..47 e-value: 5.7E-29 score: 99.8
None	No IPR available	PANTHER	PTHR35727	BNAA05G33520D PROTEIN	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1119.1	MC08g1119.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane