MC08g1066 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1066
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationMC08: 8769244 .. 8769360 (-)
RNA-Seq ExpressionMC08g1066
SyntenyMC08g1066
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGCCTATAAT

mRNA sequence

ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGCCTATAAT

Coding sequence (CDS)

ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGCCTATAAT

Protein sequence

IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
Homology
BLAST of MC08g1066 vs. ExPASy Swiss-Prot
Match: Q9SKQ4 (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-07
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY 37
           ++GMY K G+  DA KVFD+MHLR++ SWN MVSGY
Sbjct: 88  LIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGY 123

BLAST of MC08g1066 vs. ExPASy Swiss-Prot
Match: O80647 (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.3e-06
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 40
           +V MY K   +  AR+VFDKMH++ VV+WNTMVSG A N
Sbjct: 141 LVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQN 179

BLAST of MC08g1066 vs. ExPASy Swiss-Prot
Match: Q9LFI1 (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.0e-06
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA 38
           ++ MYAK G +G AR++FD M  R VVSW+T++ GYA
Sbjct: 514 LIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA 550

BLAST of MC08g1066 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.8e-06
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA 38
           ++ MYAK G + DARKVFD+M  R + SWN MV+GYA
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYA 162

BLAST of MC08g1066 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-06
Identity = 19/36 (52.78%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY 37
           ++GMYAK G + +AR++FD M  ++ V+WNTM+SGY
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGY 496

BLAST of MC08g1066 vs. NCBI nr
Match: XP_022148095.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 2.07e-14
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKLGRMGDA+KVFDKM L+SVVSWNTMVSG+AYN
Sbjct: 187 LIGMYAKLGRMGDAQKVFDKMRLKSVVSWNTMVSGFAYN 225

BLAST of MC08g1066 vs. NCBI nr
Match: XP_022997825.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 2.51e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMY KL RMGDARKVFDKM ++SV+SWNTMVSGYAYN
Sbjct: 187 LIGMYVKLRRMGDARKVFDKMRVKSVISWNTMVSGYAYN 225

BLAST of MC08g1066 vs. NCBI nr
Match: XP_004146851.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.43e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Sbjct: 180 LIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYN 218

BLAST of MC08g1066 vs. NCBI nr
Match: KAA0051178.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.43e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Sbjct: 180 LIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYN 218

BLAST of MC08g1066 vs. NCBI nr
Match: XP_008447611.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis melo] >TYK03723.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.43e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Sbjct: 180 LIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYN 218

BLAST of MC08g1066 vs. ExPASy TrEMBL
Match: A0A6J1D1Z6 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Momordica charantia OX=3673 GN=LOC111016857 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.00e-14
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKLGRMGDA+KVFDKM L+SVVSWNTMVSG+AYN
Sbjct: 187 LIGMYAKLGRMGDAQKVFDKMRLKSVVSWNTMVSGFAYN 225

BLAST of MC08g1066 vs. ExPASy TrEMBL
Match: A0A6J1KAZ0 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita maxima OX=3661 GN=LOC111492667 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.21e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMY KL RMGDARKVFDKM ++SV+SWNTMVSGYAYN
Sbjct: 187 LIGMYVKLRRMGDARKVFDKMRVKSVISWNTMVSGYAYN 225

BLAST of MC08g1066 vs. ExPASy TrEMBL
Match: A0A0A0LFT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.66e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Sbjct: 180 LIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYN 218

BLAST of MC08g1066 vs. ExPASy TrEMBL
Match: A0A5A7U7B1 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001350 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.66e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Sbjct: 180 LIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYN 218

BLAST of MC08g1066 vs. ExPASy TrEMBL
Match: A0A5D3BVI7 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00940 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.66e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 39
           ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Sbjct: 180 LIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYN 218

BLAST of MC08g1066 vs. TAIR 10
Match: AT2G21090.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-08
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY 37
           ++GMY K G+  DA KVFD+MHLR++ SWN MVSGY
Sbjct: 88  LIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGY 123

BLAST of MC08g1066 vs. TAIR 10
Match: AT2G39620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.7e-07
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 40
           +V MY K   +  AR+VFDKMH++ VV+WNTMVSG A N
Sbjct: 141 LVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQN 179

BLAST of MC08g1066 vs. TAIR 10
Match: AT3G53360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.2e-07
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA 38
           ++ MYAK G +G AR++FD M  R VVSW+T++ GYA
Sbjct: 514 LIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA 550

BLAST of MC08g1066 vs. TAIR 10
Match: AT4G37170.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 4.8e-07
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 1   IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA 38
           ++ MYAK G + DARKVFD+M  R + SWN MV+GYA
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYA 162

BLAST of MC08g1066 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 6.3e-07
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 4   MYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN 40
           MYAK  ++ +ARKVFD+M  R +VSWNT+V+GY+ N
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQN 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SKQ43.6e-0763.89Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX... [more]
O806472.3e-0658.97Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX... [more]
Q9LFI13.0e-0654.05Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidop... [more]
O231696.8e-0659.46Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX... [more]
Q9SUH68.8e-0652.78Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
XP_022148095.12.07e-1484.62putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charan... [more]
XP_022997825.12.51e-1379.49putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima... [more]
XP_004146851.13.43e-1382.05putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis sativus][more]
KAA0051178.13.43e-1382.05putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008447611.13.43e-1382.05PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucum... [more]
Match NameE-valueIdentityDescription
A0A6J1D1Z61.00e-1484.62putative pentatricopeptide repeat-containing protein At1g17630 OS=Momordica char... [more]
A0A6J1KAZ01.21e-1379.49putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita maxi... [more]
A0A0A0LFT11.66e-1382.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1[more]
A0A5A7U7B11.66e-1382.05Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A5D3BVI71.66e-1382.05Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
Match NameE-valueIdentityDescription
AT2G21090.12.5e-0863.89Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G39620.11.7e-0758.97Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G53360.12.2e-0754.05Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G37170.14.8e-0759.46Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G11290.16.3e-0758.33Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 27..37
e-value: 0.11
score: 12.7
coord: 2..24
e-value: 6.6E-4
score: 19.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 2..27
e-value: 4.7E-5
score: 21.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..39
e-value: 2.5E-8
score: 35.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1066.1MC08g1066.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding