MC08g1065 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1065
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing protein
Location	MC08: 8768850 .. 8769184 (-)
RNA-Seq Expression	MC08g1065
Synteny	MC08g1065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAACTTGGACTTCATTGTTATCGAGTCATGCTCGGTGTGGTCATCTTGAAGAAACCGTGGCCTTGTTTAGCAAGATGAGGATGAAAGGTGTTGGTGCCACTGCTGAAATGCTTGTTGTGGTGTTATCTGTTTGTGTGATTTAGCTACATTGGACAGGGGTCAGATGATACATGGGTATATAGTAAAGGGAGGTTTCGAAGATTACTTGTTCGCCAAAAATGCGCTTATAACTGTATAAGGAAAAGGAGGAGGCATTAGAGATGCAGAGAAGTTATTTCATGAGATGAAAGTGAAGAATCTTGTGAGTTGGAATGCTCTTATATACTGCTATGGC

mRNA sequence

GTAACTTGGACTTCATTGTTATCGAGTCATGCTCGGTGTGGTCATCTTGAAGAAACCGTGGCCTTGTTTAGCAAGATGAGGATGAAAGGTGTTGGTGCCACTGCTGAAATGCTTGTTGTGGTGTTATCTGTTTGTGTGTTAGCTACATTGGACAGGGGTCAGATGATACATGGGTATATAGTAAAGGGAGGTTTCGAAGATTACTTGTTCGCCAAAAATGCGCTTATAACTGTATAAGGAAAAGGAGGAGGCATTAGAGATGCAGAGAAGTTATTTCATGAGATGAAAGTGAAGAATCTTGTGAGTTGGAATGCTCTTATATACTGCTATGGC

Coding sequence (CDS)

GTAACTTGGACTTCATTGTTATCGAGTCATGCTCGGTGTGGTCATCTTGAAGAAACCGTGGCCTTGTTTAGCAAGATGAGGATGAAAGGTGTTGGTGCCACTGCTGAAATGCTTGTTGTGGTGTTATCTGTTTGTGTGTTAGCTACATTGGACAGGGGTCAGATGATACATGGGTATATAGTAAAGGGAGGTTTCGAAGATTACTTGTTCGCCAAAAATGCGCTTATAACTGTATAAGGAAAAGGAGGAGGCATTAGAGATGCAGAGAAGTTATTTCATGAGATGAAAGTGAAGAATCTTGTGAGTTGGAATGCTCTTATATACTGCTATGGC

Protein sequence

VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCVLATLDRGQMIHGYIVKGGFEDYLFAKNALITVUGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG

Homology

[Close]

BLAST of MC08g1065 vs. ExPASy Swiss-Prot
Match: Q9LNP2 (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E72 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTS+LS H++CG  E+ +  F  MRM G   + E L V  SVC  L  L   + +HGY
Sbjct: 260 VTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGY 319

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALI 108
           ++KGGFE+YL ++NALI V GK G ++DAE LF +++ K + SWN+LI
Sbjct: 320 VIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLI 367

[Close]

BLAST of MC08g1065 vs. ExPASy Swiss-Prot
Match: Q9SJK9 (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-15
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWT++++ + R G  E+ +  F +M   GV +       VL  C  LA L  G+MIHG 
Sbjct: 303 VTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGC 362

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 112
           ++  GF+ Y +  NAL+ +  K G I++A++ F ++  K+LVSWN +++ +G
Sbjct: 363 LIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFG 414

[Close]

BLAST of MC08g1065 vs. ExPASy Swiss-Prot
Match: O65543 (Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E7 PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCVLAT-LDRGQMIHGY 60
           V W+S++S +A  G   E + L ++MR +G+ A +  L+ ++S C  +T L     +H  
Sbjct: 330 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 389

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 112
           I+K GF  ++   NALI +  K G +  A ++F+E+  K+LVSW+++I  YG
Sbjct: 390 ILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYG 441

[Close]

BLAST of MC08g1065 vs. ExPASy Swiss-Prot
Match: Q9CAA8 (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           V+WT+++  + + G  EE V +F  M+  G+      L   +S C  +++L+ G   HG 
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCY 111
            +  G   Y+   N+L+T+ GK G I D+ +LF+EM V++ VSW A++  Y
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447

[Close]

BLAST of MC08g1065 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           V+W ++++ +++ GH  E + LF +M  +G           LS C  +  L+ G+ +HG 
Sbjct: 375 VSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 434

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCY 111
           +VKGG+E   F  NAL+ +  K G I +A  LF EM  K++VSWN +I  Y
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 485

[Close]

BLAST of MC08g1065 vs. NCBI nr
Match: KAG7036432.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (506), Expect = 7.49e-59
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  LATLDRGQM+HGY
Sbjct: 248 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLATLDRGQMVHGY 307

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG +RDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 308 IVKGGFEDYLFAKNALITVYGKGGDMRDAEKLFHEMKVKNLVSWNSLISSYA 359

[Close]

BLAST of MC08g1065 vs. NCBI nr
Match: XP_022997825.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima])

HSP 1 Score: 200 bits (509), Expect = 4.58e-58
Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  LATLDRGQM+HGY
Sbjct: 248 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLATLDRGQMVHGY 307

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG IRDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 308 IVKGGFEDYLFAKNALITVYGKGGDIRDAEKLFHEMKVKNLVSWNSLISSYA 359

[Close]

BLAST of MC08g1065 vs. NCBI nr
Match: XP_022949499.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita moschata])

HSP 1 Score: 200 bits (509), Expect = 4.88e-58
Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  LATLDRGQM+HGY
Sbjct: 253 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLATLDRGQMVHGY 312

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG IRDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 313 IVKGGFEDYLFAKNALITVYGKGGDIRDAEKLFHEMKVKNLVSWNSLISSYA 364

[Close]

BLAST of MC08g1065 vs. NCBI nr
Match: KAG6606718.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (506), Expect = 1.24e-57
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  LATLDRGQM+HGY
Sbjct: 248 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLATLDRGQMVHGY 307

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG +RDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 308 IVKGGFEDYLFAKNALITVYGKGGDMRDAEKLFHEMKVKNLVSWNSLISSYA 359

[Close]

BLAST of MC08g1065 vs. NCBI nr
Match: XP_023523771.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (499), Expect = 1.26e-56
Identity = 99/112 (88.39%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  L T DRGQM+HGY
Sbjct: 248 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLDTFDRGQMVHGY 307

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG IRDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 308 IVKGGFEDYLFAKNALITVYGKGGDIRDAEKLFHEMKVKNLVSWNSLISSYA 359

[Close]

BLAST of MC08g1065 vs. ExPASy TrEMBL
Match: A0A6J1KAZ0 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita maxima OX=3661 GN=LOC111492667 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 2.22e-58
Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  LATLDRGQM+HGY
Sbjct: 248 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLATLDRGQMVHGY 307

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG IRDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 308 IVKGGFEDYLFAKNALITVYGKGGDIRDAEKLFHEMKVKNLVSWNSLISSYA 359

[Close]

BLAST of MC08g1065 vs. ExPASy TrEMBL
Match: A0A6J1GD03 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita moschata OX=3662 GN=LOC111452827 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 2.36e-58
Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ALFSKMRMKGVGATAEML VVLSVC  LATLDRGQM+HGY
Sbjct: 253 VTWTSLLSSHARCGHLEETIALFSKMRMKGVGATAEMLAVVLSVCADLATLDRGQMVHGY 312

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           IVKGGFEDYLFAKNALITV GKGG IRDAEKLFHEMKVKNLVSWN+LI  Y 
Sbjct: 313 IVKGGFEDYLFAKNALITVYGKGGDIRDAEKLFHEMKVKNLVSWNSLISSYA 364

[Close]

BLAST of MC08g1065 vs. ExPASy TrEMBL
Match: A0A6J1D1Z6 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Momordica charantia OX=3673 GN=LOC111016857 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 2.26e-56
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLE T+ALFS+MRMKG+GATAEML VVLSVC  LATLDRGQMIHGY
Sbjct: 248 VTWTSLLSSHARCGHLEGTMALFSRMRMKGIGATAEMLAVVLSVCADLATLDRGQMIHGY 307

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 111
           I+KGGFEDYLFAKNALITV GKGG IRDAEKLFHEM+VKNLVSWNALI  Y 
Sbjct: 308 IIKGGFEDYLFAKNALITVYGKGGDIRDAEKLFHEMEVKNLVSWNALISSYA 359

[Close]

BLAST of MC08g1065 vs. ExPASy TrEMBL
Match: A0A0A0LFT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 6.02e-53
Identity = 93/108 (86.11%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHLEET+ LF KMRMKGVG TAEML VVLSVC  LATL+ GQMIHGY
Sbjct: 241 VTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGY 300

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALI 107
           +VKGGF DYLFAKNALIT+ GKGGG+ DAEKLFHEMKVKNLVSWNALI
Sbjct: 301 MVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALI 348

[Close]

BLAST of MC08g1065 vs. ExPASy TrEMBL
Match: A0A5D3BVI7 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00940 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 1.11e-51
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTSLLSSHARCGHL ET+ LF KMRMKGVGATAEML VVLSVC  LATL+ GQMIHGY
Sbjct: 241 VTWTSLLSSHARCGHLVETMVLFCKMRMKGVGATAEMLAVVLSVCADLATLNSGQMIHGY 300

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALI 107
           +VKGGF DYLFAKNALIT+ GKGG + DAEKLFHEMKVKNLVSWNALI
Sbjct: 301 MVKGGFNDYLFAKNALITLYGKGGDVGDAEKLFHEMKVKNLVSWNALI 348

[Close]

BLAST of MC08g1065 vs. TAIR 10
Match: AT1G17630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-25
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWTS+LS H++CG  E+ +  F  MRM G   + E L V  SVC  L  L   + +HGY
Sbjct: 260 VTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGY 319

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALI 108
           ++KGGFE+YL ++NALI V GK G ++DAE LF +++ K + SWN+LI
Sbjct: 320 VIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLI 367

[Close]

BLAST of MC08g1065 vs. TAIR 10
Match: AT2G36980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           VTWT++++ + R G  E+ +  F +M   GV +       VL  C  LA L  G+MIHG 
Sbjct: 303 VTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGC 362

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 112
           ++  GF+ Y +  NAL+ +  K G I++A++ F ++  K+LVSWN +++ +G
Sbjct: 363 LIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFG 414

[Close]

BLAST of MC08g1065 vs. TAIR 10
Match: AT4G31070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCVLAT-LDRGQMIHGY 60
           V W+S++S +A  G   E + L ++MR +G+ A +  L+ ++S C  +T L     +H  
Sbjct: 319 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 378

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCYG 112
           I+K GF  ++   NALI +  K G +  A ++F+E+  K+LVSW+++I  YG
Sbjct: 379 ILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYG 430

[Close]

BLAST of MC08g1065 vs. TAIR 10
Match: AT1G68930.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           V+WT+++  + + G  EE V +F  M+  G+      L   +S C  +++L+ G   HG 
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCY 111
            +  G   Y+   N+L+T+ GK G I D+ +LF+EM V++ VSW A++  Y
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447

[Close]

BLAST of MC08g1065 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   VTWTSLLSSHARCGHLEETVALFSKMRMKGVGATAEMLVVVLSVCV-LATLDRGQMIHGY 60
           V+W ++++ +++ GH  E + LF +M  +G           LS C  +  L+ G+ +HG 
Sbjct: 375 VSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 434

Query: 61  IVKGGFEDYLFAKNALITVXGKGGGIRDAEKLFHEMKVKNLVSWNALIYCY 111
           +VKGG+E   F  NAL+ +  K G I +A  LF EM  K++VSWN +I  Y
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 485

The following BLAST results are available for this feature:

BLAST of MC08g1065 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNP2	5.4e-24	49.07	Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis th...	[more]
Q9SJK9	2.1e-15	35.71	Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidop...	[more]
O65543	1.7e-14	34.82	Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidop...	[more]
Q9CAA8	3.0e-14	33.33	Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th...	[more]
Q9SY02	3.9e-14	36.04	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC08g1065 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036432.1	7.49e-59	89.29	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022997825.1	4.58e-58	90.18	putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima...	[more]
XP_022949499.1	4.88e-58	90.18	putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita moscha...	[more]
KAG6606718.1	1.24e-57	89.29	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_023523771.1	1.26e-56	88.39	putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo s...	[more]

BLAST of MC08g1065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAZ0	2.22e-58	90.18	putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita maxi...	[more]
A0A6J1GD03	2.36e-58	90.18	putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita mosc...	[more]
A0A6J1D1Z6	2.26e-56	87.50	putative pentatricopeptide repeat-containing protein At1g17630 OS=Momordica char...	[more]
A0A0A0LFT1	6.02e-53	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1	[more]
A0A5D3BVI7	1.11e-51	85.19	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]

BLAST of MC08g1065 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17630.1	3.8e-25	49.07	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G36980.1	1.5e-16	35.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G31070.1	1.2e-15	34.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G68930.1	2.1e-15	33.33	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G02750.1	2.7e-15	36.04	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 1..31 e-value: 2.3E-6 score: 25.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 79..98 e-value: 0.068 score: 13.4 coord: 1..31 e-value: 2.2E-7 score: 30.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..33 score: 10.522905
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..110 e-value: 3.9E-15 score: 58.0
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1065.1	MC08g1065.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042026	protein refolding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0005515	protein binding