MC08g1049 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1049
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationMC08: 8479415 .. 8479771 (+)
RNA-Seq ExpressionMC08g1049
SyntenyMC08g1049
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGTCCAAAAAGAATGTAAATTCTTTCTTTGGTATCTTCTCCACAGAGGCCTCAATACTGCAGACAGGCTTCAAGTTTGCTTTCGCTCTCCAGTCCAAAAACTAGTGTGTCTTTTGTCATCAGACCTGTTCCTGCATTGCCCCTTCACTAATGCTCTCGGGTCTCATCTCTTTTGTATTTTCCAAATTCAAACTGCTATTCCCAACTGCATTGGTGCTTTTATATTCGAGAATGCATCTACCAAACCCCCAAAGTGCCAACGTGACATCCTTTGGAGTAATACCTTTGGCTCTCTATCGTGGAATTTGTGGTTGCAATGCAACGACTACACTTTTTCGGAGACCAAAAGATCTCTG

mRNA sequence

CAAGTCCAAAAAGAATGTAAATTCTTTCTTTGGTATCTTCTCCACAGAGGCCTCAATACTGCAGACAGGCTTCAAGTTTGCTTTCGCTCTCCAGTCCAAAAACTAGTGTGTCTTTTGTCATCAGACCTGTTCCTGCATTGCCCCTTCACTAATGCTCTCGGGTCTCATCTCTTTTGTATTTTCCAAATTCAAACTGCTATTCCCAACTGCATTGGTGCTTTTATATTCGAGAATGCATCTACCAAACCCCCAAAGTGCCAACGTGACATCCTTTGGAGTAATACCTTTGGCTCTCTATCGTGGAATTTGTGGTTGCAATGCAACGACTACACTTTTTCGGAGACCAAAAGATCTCTG

Coding sequence (CDS)

CAAGTCCAAAAAGAATGTAAATTCTTTCTTTGGTATCTTCTCCACAGAGGCCTCAATACTGCAGACAGGCTTCAAGTTTGCTTTCGCTCTCCAGTCCAAAAACTAGTGTGTCTTTTGTCATCAGACCTGTTCCTGCATTGCCCCTTCACTAATGCTCTCGGGTCTCATCTCTTTTGTATTTTCCAAATTCAAACTGCTATTCCCAACTGCATTGGTGCTTTTATATTCGAGAATGCATCTACCAAACCCCCAAAGTGCCAACGTGACATCCTTTGGAGTAATACCTTTGGCTCTCTATCGTGGAATTTGTGGTTGCAATGCAACGACTACACTTTTTCGGAGACCAAAAGATCTCTG

Protein sequence

QVQKECKFFLWYLLHRGLNTADRLQVCFRSPVQKLVCLLSSDLFLHCPFTNALGSHLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSETKRSL
Homology
BLAST of MC08g1049 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.26e-09
Identity = 40/122 (32.79%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 784 KKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSET 117
               + +  +  PN + + + +N  +   K Q+ ++  NT   L W +WL+ N+  F + 
Sbjct: 844 KAQALLKWNST-PNDVKS-LAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQ 903

BLAST of MC08g1049 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.27e-09
Identity = 40/122 (32.79%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 878 KKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSET 117
               + +  +  PN + + + +N  +   K Q+ ++  NT   L W +WL+ N+  F + 
Sbjct: 938 KAQALLKWNST-PNDVKS-LAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQ 997

BLAST of MC08g1049 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.24e-08
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 4    KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
            K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 986  KKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

Query: 64   HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSET 118
                +    +  P  + + I +N  +   + Q+ ++  NT  ++ W +WL+ N+  F + 
Sbjct: 1046 KAKALLNWNST-PTDVQSLI-QNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQ 1105

BLAST of MC08g1049 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.16e-07
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 286 KKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSE 114
               + +     P  + + + +N  +   + Q+ ++  NT   L W +WL+ N+  F +
Sbjct: 346 KAKALLKWNRT-PTDVQSLV-QNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQ 402

BLAST of MC08g1049 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.20e-07
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 329 KKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSE 114
               + +     P  + + + +N  +   + Q+ ++  NT   L W +WL+ N+  F +
Sbjct: 389 KAKALLKWNRT-PTDVQSLV-QNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQ 445

BLAST of MC08g1049 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.11e-10
Identity = 40/122 (32.79%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 784 KKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSET 117
               + +  +  PN + + + +N  +   K Q+ ++  NT   L W +WL+ N+  F + 
Sbjct: 844 KAQALLKWNST-PNDVKS-LAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQ 903

BLAST of MC08g1049 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.15e-10
Identity = 40/122 (32.79%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 878 KKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSET 117
               + +  +  PN + + + +N  +   K Q+ ++  NT   L W +WL+ N+  F + 
Sbjct: 938 KAQALLKWNST-PNDVKS-LAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQ 997

BLAST of MC08g1049 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.50e-08
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 4    KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
            K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 986  KKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

Query: 64   HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSET 118
                +    +  P  + + I +N  +   + Q+ ++  NT  ++ W +WL+ N+  F + 
Sbjct: 1046 KAKALLNWNST-PTDVQSLI-QNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQ 1105

BLAST of MC08g1049 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.53e-07
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 286 KKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSE 114
               + +     P  + + + +N  +   + Q+ ++  NT   L W +WL+ N+  F +
Sbjct: 346 KAKALLKWNRT-PTDVQSLV-QNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQ 402

BLAST of MC08g1049 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.55e-07
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 4   KECKFFLWYLLHRGLNTADRLQVCFR----SPVQKLVCLLSSD----LFLHCPFTNALGS 63
           K+CKFF+W L+H  +NTADRLQ        SP    +C  S +    LF+HCP++  L S
Sbjct: 329 KKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

Query: 64  HLFCIFQIQTAIPNCIGAFIFENASTKPPKCQRDILWSNTFGSLSWNLWLQCNDYTFSE 114
               + +     P  + + + +N  +   + Q+ ++  NT   L W +WL+ N+  F +
Sbjct: 389 KAKALLKWNRT-PTDVQSLV-QNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQ 445

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0044556.11.26e-0932.79LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.11.27e-0932.79LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.17.24e-0830.08LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
TYK29578.13.16e-0731.09LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044451.13.20e-0731.09LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7TR156.11e-1032.79LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB86.15e-1032.79LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I73.50e-0830.08LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E1E31.53e-0731.09LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA71.55e-0731.09LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1049.1MC08g1049.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity