MC08g0772 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0772
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 6282261 .. 6282344 (-)
RNA-Seq Expression	MC08g0772
Synteny	MC08g0772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTACGCTCTAATCCGAGTAGCATGGAACACGTGGAATACCGTGTGAATCAGCAACGACCACCTTACAAGGCTAAATATTCC

mRNA sequence

AACTTACGCTCTAATCCGAGTAGCATGGAACACGTGGAATACCGTGTGAATCAGCAACGACCACCTTACAAGGCTAAATATTCC

Coding sequence (CDS)

AACTTACGCTCTAATCCGAGTAGCATGGAACACGTGGAATACCGTGTGAATCAGCAACGACCACCTTACAAGGCTAAATATTCC

Protein sequence

NLRSNPSSMEHVEYRVNQQRPPYKAKYS

Homology

[Close]

BLAST of MC08g0772 vs. NCBI nr
Match: CAO02552.1 (putative ATP synthase CF0 subunit I, partial [Vigna unguiculata])

HSP 1 Score: 43.1 bits (100), Expect = 3.19e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 12 LRSDPSSMGHVESRVNQQGPPCKAKYS 38

[Close]

BLAST of MC08g0772 vs. NCBI nr
Match: GGP32287.1 (hypothetical protein GCM10010230_68480 [Streptomyces narbonensis])

HSP 1 Score: 43.1 bits (100), Expect = 4.91e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 37 LRSDPSSMGHVESRVNQQGPPCKAKYS 63

[Close]

BLAST of MC08g0772 vs. NCBI nr
Match: CAO02550.1 (putative ribosomal protein S3, partial [Vigna unguiculata])

HSP 1 Score: 43.1 bits (100), Expect = 5.69e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 41 LRSDPSSMGHVESRVNQQGPPCKAKYS 67

[Close]

BLAST of MC08g0772 vs. NCBI nr
Match: CAO02530.1 (putative 23S ribosomal RNA, partial [Vigna unguiculata])

HSP 1 Score: 43.1 bits (100), Expect = 6.44e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 45 LRSDPSSMGHVESRVNQQGPPCKAKYS 71

[Close]

BLAST of MC08g0772 vs. NCBI nr
Match: CAO02532.1 (putative 23S ribosomal RNA, partial [Vigna unguiculata])

HSP 1 Score: 43.1 bits (100), Expect = 6.71e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 47 LRSDPSSMGHVESRVNQQGPPCKAKYS 73

[Close]

BLAST of MC08g0772 vs. ExPASy TrEMBL
Match: A6H5B5 (Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata OX=3917 GN=atpF PE=2 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 1.54e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 12 LRSDPSSMGHVESRVNQQGPPCKAKYS 38

[Close]

BLAST of MC08g0772 vs. ExPASy TrEMBL
Match: A6H5B3 (Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata OX=3917 GN=rrn23 PE=2 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 2.76e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 41 LRSDPSSMGHVESRVNQQGPPCKAKYS 67

[Close]

BLAST of MC08g0772 vs. ExPASy TrEMBL
Match: A6H593 (Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata OX=3917 GN=rrn23 PE=2 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 3.12e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 45 LRSDPSSMGHVESRVNQQGPPCKAKYS 71

[Close]

BLAST of MC08g0772 vs. ExPASy TrEMBL
Match: V7CP58 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G203700g PE=4 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 3.25e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 52 LRSDPSSMGHVESRVNQQGPPCKAKYS 78

[Close]

BLAST of MC08g0772 vs. ExPASy TrEMBL
Match: A6H595 (Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata OX=3917 GN=rrn23 PE=2 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 3.25e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 2  LRSNPSSMEHVEYRVNQQRPPYKAKYS 28
          LRS+PSSM HVE RVNQQ PP KAKYS
Sbjct: 47 LRSDPSSMGHVESRVNQQGPPCKAKYS 73

The following BLAST results are available for this feature:

BLAST of MC08g0772 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g0772 vs. NCBI nr


Match Name	E-value	Identity	Description
CAO02552.1	3.19e-04	81.48	putative ATP synthase CF0 subunit I, partial [Vigna unguiculata]	[more]
GGP32287.1	4.91e-04	81.48	hypothetical protein GCM10010230_68480 [Streptomyces narbonensis]	[more]
CAO02550.1	5.69e-04	81.48	putative ribosomal protein S3, partial [Vigna unguiculata]	[more]
CAO02530.1	6.44e-04	81.48	putative 23S ribosomal RNA, partial [Vigna unguiculata]	[more]
CAO02532.1	6.71e-04	81.48	putative 23S ribosomal RNA, partial [Vigna unguiculata]	[more]

BLAST of MC08g0772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A6H5B5	1.54e-04	81.48	Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata OX=3917 GN=a...	[more]
A6H5B3	2.76e-04	81.48	Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata OX=3917 GN=rrn23 P...	[more]
A6H593	3.12e-04	81.48	Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata OX=3917 GN=rrn23 PE=2...	[more]
V7CP58	3.25e-04	81.48	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G203700g PE=4 ...	[more]
A6H595	3.25e-04	81.48	Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata OX=3917 GN=rrn23 PE=2...	[more]

BLAST of MC08g0772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0772.1	MC08g0772.1	mRNA