MC08g0190 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g0190
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionserine/arginine-rich splicing factor SC35-like
LocationMC08: 1376470 .. 1380252 (-)
RNA-Seq ExpressionMC08g0190
SyntenyMC08g0190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATAATTGAAACTTGCCACCTAAGGTAAAAGATTCTGATAATAATTAATTATATTATAAATAATTATAAGTTTCCTTGACACACAAATTAAAAAATATATATAAAGATTTAAGGATATTTTGTACAATTAAGTTAAAAGGAAAAAATATATTTAAAGAAGAGAGGGCCATTTTTCGAATTTAGTCGAAATTGTGGAGCATTTATGAAATACAAAAAATGATTGGAATCTCTTTGAAGTTTGAAGTTCCACCATGTTCCATGAGAGCCCTAGGCGAGGGTGAGCCCTGAATCCGCCGCTCCGCTCTCAGCTCTCCAACTTTCAGTCTCAGCTGAATCCATTAATTTGCATTTGCAGAGACAGAAATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGTATCTCCCAACCCTAAATCTTTACTTCACTCTCAATCTCCATCTCTTTTTTCCTTTAATTTCTTCCCCTTTTTGTTTTTCTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGTTTCCCCCTTTATCTCTCTCTCTCTCGCGTTTAATCTTCTTCTTTTGATGTGTAATTTGTTGGTGGTAATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGTCAGCTTCAGTCCGACCAAAAACACACCTTATAACCTTCAGCTTTTTTCAATTTAACTTTAGCTGCTGTTTTTATGCCAAATCAAATTGGGTTTCTGCTTTCCTATTTAGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATGTAAATCTTCACCCTTTCAACTGCATAATTTCTCAAATTCTAATACGCACAAGTATGTTTTGATTCTCGCCCTTTTGGTTTGTTTATCAGTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGTGAGACTCCTTGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATGTTTTCTCGAGGTAATTGCCCTCATTTACTTGTGAATCCAAAAAACAGAAATCTATGTACTCTTCCGCATAGTCATATAGAGTGAAAGAGGTAATGCCTTCTTCAGTTCTTCTCGGGTTATGGATAAATTAAACTTCCTTGCTAGTTTACAGGTCCTTTAGGATATTGATTTGCATCCTTTTATTGTTCTAATGGAATTGCTACATTTCTTGCGCATAGAATTAGCTTTGTGTACTAATCTCAGTTGATGTTGATGACCTCATATGGGTGATCAAAACTAGTTTGAAACATTGGTATTTTGTTAAATAGACAGACTATAAGGGCGTGATTTGTAATTATTCCTTTACTCAACATGTGTCTCTTTATGGGGTGCTGAAATTTCAGTGCTGTATGGTGTTTACTGCGCCATGCTATTAGGAAATTCTAGAAAGTATTTTTCTTGAGTTGGTTCATAGATGCAATCACTTCTGGCCTTGTCATTTTGCTCACCTAAATTCAGTAGTGATACATCTTCCTGTCATTAATCTCTTGAATCCATTATGTTCTAAATTTTGTGGGGTATGGAGAAGATTAAACAAAAAGAGCAAAGGAAGCAAGTTGTTGCAATTATTCTAGTTTGAAATGTGAATGGGCATGATGTGATCACGAGTCACCTTTATCAACAGAGTGAATTTTAATGCATAGTGTAGTTTTAATTATCGTGGATTGATCTAGTGGTACTAGAGCATGTGAAAAAGTAAAGGGACTTTGGGAGGGGGTTCAAACTCATGATAGCCATCACATAATATAATATCCAGCAAATTTCTTGACAATCAAATGTTATAGGGGTAGGAGCCGTGCTGTGGGATTAGTCGAAATGGAAAGCTAGTCTTGGGATTGCTGTTTTTACCTAAAAGTGAATGTTTAAGTGGGCTTTGACACTCATGACTCATGAGTATCAAAAAAGAAAAAAAAATCCTGTGCGGTTTTATATTTGAAGAAAAAGATTAAAAGCTACAAATTGTTATAAAACTAGAACAAAATAAAAACAAGGAGAATATTAAGAGCCTAAGATGGAGAAGAGATGAAGAGAACTAGAGAAGAGAGTAGAGCAAATATGAGATGTCTCTATTGAGTTGTTGTGAGATGTATTTCACAAATGCTCCATACAACAACTGTTTATAAGGTTACAAAAACCAACATAAAGCGGAGACATGAGAGTTATGGGGGTTAATGGGGCTATGGGAGCCATGGACATCTAATTTAGAATATTCATGACACTCTCCCATTACAAGTAACTTCTTTTGTCTCCAACATTGTTTTTCAGAAACTGGACTTCGGAGTAAATTACACATTATAAAAAACTATCTTAAGTTTGTTACAAACTTGTATTTGATCAACAACTATTGAGACAATTTTTTATGGGGCAGGGACAGAATGGTTTAGAAGGCTTGTCTTAGTCTGAGTTTCTAATGTTTACAAGCAGTTGATTGCTACCTCATTACTTTTAGCTTGTTATTCTACTCTTCTCATACTCATGGATTGACAAAAACATTTCAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGGTATTCAAATACTTTCTTAATATTTTATTAGTCATTATTTTTTAAAAGAACTTTTCCATTATAACATCTCGCACACCAAAGTCAATTATCTAACATTATTATTATATATCCTATTTTAAGTTTCTTGAGCATATCCAAACACAATTTTCATAAAATTTCATGGACATCTCACATTTCCATGAACAAAGCAAGGTCCTTATTCTTCATTCATTCTAATTATTTTCATTCTCTTTGCTTTGCACTCTAAATGGAAATGGATTTGATACTGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCAAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGTTAGCCTGCCATTTTTATTGCTAATGATTTTTCTTTTTTATTTTTTAATTATATATCTGGTGTCTGTCTAGTGATAGCCAAAATATGCCTGCAGGAATGATCCATATGATGTGCCATAGAGATAATTTATGAGAGCAAAGGGCAAGGCATTGGATTTTAGAAATTATCTATGCATTTAATGATGGAACAAGTATTGCATCCAATGGCTTGGATGCCAAGATATTTTGCACCATTGTAGTATCTGCTTTTATACTCCCAGGACTGGTTGGATGTCAAGATGATTCACATGTAGGATCCTATTCCTAATTAGTTCATGAGTTATTTCCCCCTTTTTTTTTTTTGAGATTTAATTGTAGCACCTGTACTATTTACTTGCAAAATATGAGTCTTCCCAGTGTTTGGTTTTTAGCTCCTTAGATGTATA

mRNA sequence

GCATAATTGAAACTTGCCACCTAAGGTAAAAGATTCTGATAATAATTAATTATATTATAAATAATTATAAGTTTCCTTGACACACAAATTAAAAAATATATATAAAGATTTAAGGATATTTTGTACAATTAAGTTAAAAGGAAAAAATATATTTAAAGAAGAGAGGGCCATTTTTCGAATTTAGTCGAAATTGTGGAGCATTTATGAAATACAAAAAATGATTGGAATCTCTTTGAAGTTTGAAGTTCCACCATGTTCCATGAGAGCCCTAGGCGAGGAGACAGAAATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCAAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGAATGATCCATATGATGTGCCATAGAGATAATTTATGAGAGCAAAGGGCAAGGCATTGGATTTTAGAAATTATCTATGCATTTAATGATGGAACAAGTATTGCATCCAATGGCTTGGATGCCAAGATATTTTGCACCATTGTAGTATCTGCTTTTATACTCCCAGGACTGGTTGGATGTCAAGATGATTCACATGTAGGATCCTATTCCTAATTAGTTCATGAGTTATTTCCCCCTTTTTTTTTTTTGAGATTTAATTGTAGCACCTGTACTATTTACTTGCAAAATATGAGTCTTCCCAGTGTTTGGTTTTTAGCTCCTTAGATGTATA

Coding sequence (CDS)

ATGATTGGAATCTCTTTGAAGTTTGAAGTTCCACCATGTTCCATGAGAGCCCTAGGCGAGGAGACAGAAATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCAAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGAATGA

Protein sequence

MIGISLKFEVPPCSMRALGEETEMSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSPSPAKSDADE
Homology
[Close]
BLAST of MC08g0190 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.9e-64
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 143
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 144 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 203
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 204 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 263
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 264 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 267
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]
BLAST of MC08g0190 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-26
Identity = 104/228 (45.61%), Postives = 131/228 (57.46%), Query Frame = 0 

Query: 27  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 86
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 87  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 146
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 147 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 206
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 207 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 253
             RS S S RS S +R  P T    S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPPPT----SKRESNSRSRSKSPPKSPEEEGA 218

[Close]
BLAST of MC08g0190 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0 

Query: 27  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 86
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 87  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 146
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 147 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 206
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 207 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 253
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]
BLAST of MC08g0190 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0 

Query: 27  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 86
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 87  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 146
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 147 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 206
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 207 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 253
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]
BLAST of MC08g0190 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0 

Query: 27  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 86
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 87  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 146
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 147 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 206
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 207 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 253
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]
BLAST of MC08g0190 vs. NCBI nr
Match: XP_022131916.1 (serine/arginine-rich splicing factor SC35-like [Momordica charantia])

HSP 1 Score: 457 bits (1175), Expect = 5.82e-161
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 203
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 204 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 263
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 264 PSPAKSDADE 273
           PSPAKSDADE
Sbjct: 241 PSPAKSDADE 250

[Close]
BLAST of MC08g0190 vs. NCBI nr
Match: XP_008445340.1 (PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo])

HSP 1 Score: 400 bits (1027), Expect = 2.11e-138
Identity = 229/252 (90.87%), Postives = 239/252 (94.84%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSP-SRSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+P SR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 264 RSPSPAKSDADE 273
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]
BLAST of MC08g0190 vs. NCBI nr
Match: XP_011649457.1 (serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus])

HSP 1 Score: 399 bits (1024), Expect = 6.04e-138
Identity = 228/252 (90.48%), Postives = 240/252 (95.24%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSP-SRSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTR SP+TRRSISPR++P SR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 264 RSPSPAKSDADE 273
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]
BLAST of MC08g0190 vs. NCBI nr
Match: KAA0064834.1 (serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa])

HSP 1 Score: 398 bits (1022), Expect = 1.26e-137
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSP-SRSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+P SR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 264 RSPSPAKSDAD 272
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]
BLAST of MC08g0190 vs. NCBI nr
Match: XP_038884086.1 (serine/arginine-rich splicing factor SC35-like [Benincasa hispida])

HSP 1 Score: 395 bits (1016), Expect = 9.97e-137
Identity = 228/252 (90.48%), Postives = 237/252 (94.05%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDD RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDPRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSPS-RSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTRRSP+TRRSISPRR+P  R RSDD  SP R+NGS    K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRRSPDTRRSISPRRTPPPRGRSDDEHSPSRDNGS-SDDKPVDS 240

Query: 264 RSPSPAKSDADE 273
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]
BLAST of MC08g0190 vs. ExPASy TrEMBL
Match: A0A6J1BQT1 (serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN=LOC111004937 PE=4 SV=1)

HSP 1 Score: 457 bits (1175), Expect = 2.82e-161
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 203
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 204 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 263
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 264 PSPAKSDADE 273
           PSPAKSDADE
Sbjct: 241 PSPAKSDADE 250

[Close]
BLAST of MC08g0190 vs. ExPASy TrEMBL
Match: A0A1S3BCG4 (serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103488401 PE=4 SV=1)

HSP 1 Score: 400 bits (1027), Expect = 1.02e-138
Identity = 229/252 (90.87%), Postives = 239/252 (94.84%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSP-SRSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+P SR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 264 RSPSPAKSDADE 273
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]
BLAST of MC08g0190 vs. ExPASy TrEMBL
Match: A0A0A0LQG4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 399 bits (1024), Expect = 2.92e-138
Identity = 228/252 (90.48%), Postives = 240/252 (95.24%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSP-SRSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTR SP+TRRSISPR++P SR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 264 RSPSPAKSDADE 273
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]
BLAST of MC08g0190 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 398 bits (1022), Expect = 6.11e-138
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 144 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 203
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 204 DDERRSISNSDRSMSPTRRSPNTRRSISPRRSP-SRSRSDDGLSPKRENGSPLSPKLVDS 263
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+P SR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 264 RSPSPAKSDAD 272
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]
BLAST of MC08g0190 vs. ExPASy TrEMBL
Match: A0A6J1GJA8 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 4.44e-135
Identity = 228/252 (90.48%), Postives = 235/252 (93.25%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSS-KPRGRSRS 143
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSS K RGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 144 RSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGR 203
           RSPR RHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERERHRSRSRSASPD NKDRRR R
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 204 DDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDS 263
           DD ERRS S SDRSMSPTR SP+TRRSISPRR+PSR RSDD  SP+RENGS L  K V+S
Sbjct: 181 DD-ERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGS-LDDKPVNS 240

Query: 264 RSPSPAKSDADE 273
           RSPSPAKSDADE
Sbjct: 241 RSPSPAKSDADE 250

[Close]
BLAST of MC08g0190 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 245.7 bits (626), Expect = 4.2e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 143
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 144 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 203
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 204 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 263
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 264 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 267
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]
BLAST of MC08g0190 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 245.7 bits (626), Expect = 4.2e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0 

Query: 24  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 83
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 84  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 143
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 144 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 203
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 204 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 263
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 264 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 267
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]
BLAST of MC08g0190 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-13
Identity = 102/254 (40.16%), Postives = 127/254 (50.00%), Query Frame = 0 

Query: 40  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 99
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 100 LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS---------SKPRGRSRSRSP----- 159
           +DG +L GRE+ V FA+   N +K  + R  E           + PR  SRSRSP     
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRG 156

Query: 160 --RSRHRDDYR--DRDHRRRSRSRSRDRYDRDRPH-RERERHRSRSRSASPDRNKDRRRG 219
             RSR  D Y    R H  RS S   +RYD  R + R      SR RS +P R K   R 
Sbjct: 157 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKS--RS 216

Query: 220 RDDDERRSISNSD-RSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLV 274
                RRSIS S  RS SP   SP   RS+SPRRS SRS      SP+R   S  +P+  
Sbjct: 217 LSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRS-PRRSRSPRRSRRS-YTPEPA 276

[Close]
BLAST of MC08g0190 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-10
Identity = 85/245 (34.69%), Postives = 116/245 (47.35%), Query Frame = 0 

Query: 27  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 86
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 87  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKP-RGRSRSRSP 146
           +    +A +A  ++DG +L GRE+ V FA+              E+  KP   R+R R  
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--------------ENRKKPTEMRTRDRGG 146

Query: 147 RSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRS-ASPDRNKDRRRGRDDD 206
           RS          +R + R RS  RY R  P R   R RSRSR   SP   + + R     
Sbjct: 147 RS----------NRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQ 206

Query: 207 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSP 266
           +RR       S SP        RS SP R  S SRS       R+N S  +P+   S+SP
Sbjct: 207 DRRYEKERSYSRSPPHNGSRV-RSGSPGRVKSHSRSPRRSVSPRKNRS-YTPEQARSQSP 243

Query: 267 SPAKS 270
            P +S
Sbjct: 267 VPRQS 243

[Close]
BLAST of MC08g0190 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-09
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 0 

Query: 41  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 100
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 101 DGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRG---RSRSRSPRSRHRDDYRDRD 160
           + +++ GREI + FA+   N +  ++ R    +S   G   R+  RSPR R+R   R R 
Sbjct: 109 NHKVIGGREIAIVFAE--ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 168

Query: 161 HRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMS 220
             RR    S+ R   D  +  R R RS SRS  P RN+   + R+               
Sbjct: 169 PPRRESRHSKVR--EDDLYSPRRRSRSISRSPLP-RNEREYKSRN--------------- 228

Query: 221 PTRRSPNTRRSISPRRSPSRSRS 241
              RSP   R ++P RS   SRS
Sbjct: 229 --CRSPREERVLTPIRSRCLSRS 229

The following BLAST results are available for this feature:
BLAST of MC08g0190 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FMG45.9e-6461.13Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3... [more]
P303523.7e-2645.61Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV... [more]
Q3MHR56.4e-2645.18Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3[more]
Q011306.4e-2645.18Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=... [more]
Q620936.4e-2645.18Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV... [more]
BLAST of MC08g0190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022131916.15.82e-161100.00serine/arginine-rich splicing factor SC35-like [Momordica charantia][more]
XP_008445340.12.11e-13890.87PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo][more]
XP_011649457.16.04e-13890.48serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus][more]
KAA0064834.11.26e-13790.84serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa][more]
XP_038884086.19.97e-13790.48serine/arginine-rich splicing factor SC35-like [Benincasa hispida][more]
BLAST of MC08g0190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BQT12.82e-161100.00serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN... [more]
A0A1S3BCG41.02e-13890.87serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0LQG42.92e-13890.48RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV... [more]
A0A5A7VC446.11e-13890.84Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1GJA84.44e-13590.48serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata ... [more]
BLAST of MC08g0190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64200.14.2e-6561.13ortholog of human splicing factor SC35 [more]
AT5G64200.24.2e-6561.13ortholog of human splicing factor SC35 [more]
AT1G55310.11.3e-1340.16SC35-like splicing factor 33 [more]
AT3G13570.13.8e-1034.69SC35-like splicing factor 30A [more]
AT5G18810.11.9e-0933.00SC35-like splicing factor 28 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 40..113
e-value: 5.3E-25
score: 99.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 41..110
e-value: 7.4E-21
score: 73.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 39..117
score: 19.570105
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 17..128
e-value: 6.4E-28
score: 99.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..211
NoneNo IPR availablePANTHERPTHR23147:SF161OS08G0486200 PROTEINcoord: 24..259
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 24..259
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 30..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g0190.1MC08g0190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding