MC08g0182 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g0182
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description30S ribosomal protein S3, chloroplastic
LocationMC08: 1317984 .. 1318082 (-)
RNA-Seq ExpressionMC08g0182
SyntenyMC08g0182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGGAAACGAAAATGTCGGCTTGAGTAATGCAAACATTGGTGAGAATCCAATACCCCGAAAATCTAAGGTTTCCTTTGCAAGGTTCGTCCATGAAGGG

mRNA sequence

AGCGGAAACGAAAATGTCGGCTTGAGTAATGCAAACATTGGTGAGAATCCAATACCCCGAAAATCTAAGGTTTCCTTTGCAAGGTTCGTCCATGAAGGG

Coding sequence (CDS)

AGCGGAAACGAAAATGTCGGCTTGAGTAATGCAAACATTGGTGAGAATCCAATACCCCGAAAATCTAAGGTTTCCTTTGCAAGGTTCGTCCATGAAGGG

Protein sequence

SGNENVGLSNANIGENPIPRKSKVSFARFVHEG
Homology
BLAST of MC08g0182 vs. NCBI nr
Match: OIT06061.1 (hypothetical protein A4A49_61658, partial [Nicotiana attenuata])

HSP 1 Score: 58.5 bits (140), Expect = 4.60e-10
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSNANIGENP+PRK K S ARFVHEG
Sbjct: 36 SGSENVGLSNANIGENPMPRKPKGSSARFVHEG 68

BLAST of MC08g0182 vs. NCBI nr
Match: RCU61601.1 (hypothetical protein SETIT_J017000v2 [Setaria italica])

HSP 1 Score: 56.6 bits (135), Expect = 2.01e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 24 SGSENVGLSNENIGENPMPRKPKVSSARFVHGG 56

BLAST of MC08g0182 vs. NCBI nr
Match: PVH36848.1 (hypothetical protein PAHAL_6G182100 [Panicum hallii])

HSP 1 Score: 56.6 bits (135), Expect = 2.66e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 36 SGSENVGLSNKNIGENPMPRKPKVSSARFVHGG 68

BLAST of MC08g0182 vs. NCBI nr
Match: OIT28184.1 (hypothetical protein A4A49_57930 [Nicotiana attenuata])

HSP 1 Score: 56.6 bits (135), Expect = 2.66e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSNANIGENP+PRK K S ARFVH G
Sbjct: 36 SGSENVGLSNANIGENPMPRKPKGSSARFVHRG 68

BLAST of MC08g0182 vs. NCBI nr
Match: PUZ60668.1 (hypothetical protein GQ55_4G162800 [Panicum hallii var. hallii])

HSP 1 Score: 56.6 bits (135), Expect = 2.66e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 36 SGSENVGLSNENIGENPMPRKPKVSSARFVHGG 68

BLAST of MC08g0182 vs. ExPASy TrEMBL
Match: A0A1J6ILP4 (Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_61658 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.23e-10
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSNANIGENP+PRK K S ARFVHEG
Sbjct: 36 SGSENVGLSNANIGENPMPRKPKGSSARFVHEG 68

BLAST of MC08g0182 vs. ExPASy TrEMBL
Match: A0A368PFP8 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_J017000v2 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.71e-10
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 24 SGSENVGLSNENIGENPMPRKPKVSSARFVHGG 56

BLAST of MC08g0182 vs. ExPASy TrEMBL
Match: A0A2T7ER25 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G215200 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.29e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 36 SGSENVGLSNENIGENPMPRKPKVSSARFVHGG 68

BLAST of MC08g0182 vs. ExPASy TrEMBL
Match: A0A2T7DYM5 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G162800 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.29e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 36 SGSENVGLSNENIGENPMPRKPKVSSARFVHGG 68

BLAST of MC08g0182 vs. ExPASy TrEMBL
Match: A0A0A9R3D3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.29e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1  SGNENVGLSNANIGENPIPRKSKVSFARFVHEG 33
          SG+ENVGLSN NIGENP+PRK KVS ARFVH G
Sbjct: 36 SGSENVGLSNENIGENPMPRKPKVSSARFVHGG 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
OIT06061.14.60e-1084.85hypothetical protein A4A49_61658, partial [Nicotiana attenuata][more]
RCU61601.12.01e-0981.82hypothetical protein SETIT_J017000v2 [Setaria italica][more]
PVH36848.12.66e-0981.82hypothetical protein PAHAL_6G182100 [Panicum hallii][more]
OIT28184.12.66e-0981.82hypothetical protein A4A49_57930 [Nicotiana attenuata][more]
PUZ60668.12.66e-0981.82hypothetical protein GQ55_4G162800 [Panicum hallii var. hallii][more]
Match NameE-valueIdentityDescription
A0A1J6ILP42.23e-1084.85Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_6165... [more]
A0A368PFP89.71e-1081.82Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_J017000v2 PE=4 SV=1[more]
A0A2T7ER251.29e-0981.82Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G21520... [more]
A0A2T7DYM51.29e-0981.82Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G16280... [more]
A0A0A9R3D31.29e-0981.82Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g0182.1MC08g0182.1mRNA