MC08g0022 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0022
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	cytochrome b-c1 complex subunit 8-like
Location	MC08: 158559 .. 158729 (+)
RNA-Seq Expression	MC08g0022
Synteny	MC08g0022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGCAACCGGTCCGGATGAAGGCTGTGGTCTACGCCTTATCGCCATTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATTCACCACAAGATCTCCGAGAACTGGATCAGTGCCGTCCTTCTAGTTACTCCCGTCGTCGGCACCTACACG

mRNA sequence

ATGGGGAAGCAACCGGTCCGGATGAAGGCTGTGGTCTACGCCTTATCGCCATTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATTCACCACAAGATCTCCGAGAACTGGATCAGTGCCGTCCTTCTAGTTACTCCCGTCGTCGGCACCTACACG

Coding sequence (CDS)

ATGGGGAAGCAACCGGTCCGGATGAAGGCTGTGGTCTACGCCTTATCGCCATTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATTCACCACAAGATCTCCGAGAACTGGATCAGTGCCGTCCTTCTAGTTACTCCCGTCGTCGGCACCTACACG

Protein sequence

MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT

Homology

[Close]

BLAST of MC08g0022 vs. ExPASy Swiss-Prot
Match: Q9SG91 (Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.9e-23
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTY 57
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWISA LLVTPVVGTY
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTY 56

[Close]

BLAST of MC08g0022 vs. ExPASy Swiss-Prot
Match: Q9FLB7 (Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-22
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 58
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWIS +LLV PVVGTY+
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYS 57

[Close]

BLAST of MC08g0022 vs. ExPASy Swiss-Prot
Match: P46269 (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-21
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 58
          MGKQPV++KAVVYA+SPFQQKIM GLW DL GKIHHK+SENWISA LL+ P+VGTY+
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYS 57

[Close]

BLAST of MC08g0022 vs. NCBI nr
Match: XP_022131282.1 (cytochrome b-c1 complex subunit 8-like [Momordica charantia])

HSP 1 Score: 120 bits (301), Expect = 3.97e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. NCBI nr
Match: XP_038886592.1 (cytochrome b-c1 complex subunit 8-like [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 2.69e-32
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQKIMTGLWNDL GKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLPGKIHHKISENWISAALLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. NCBI nr
Match: XP_022951208.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023537368.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6585163.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020083.1 hypothetical protein SDJN02_16765 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (286), Expect = 7.73e-32
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. NCBI nr
Match: XP_022961649.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023545652.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6598219.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029201.1 hypothetical protein SDJN02_07538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (286), Expect = 7.73e-32
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. NCBI nr
Match: XP_004142978.1 (cytochrome b-c1 complex subunit 8 [Cucumis sativus])

HSP 1 Score: 114 bits (284), Expect = 1.56e-31
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAVVYALSPFQQKIM+GLWNDL+GKIHHKISENWISA LL+TPVVG+YT
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYT 57

[Close]

BLAST of MC08g0022 vs. ExPASy TrEMBL
Match: A0A6J1BQK7 (cytochrome b-c1 complex subunit 8-like OS=Momordica charantia OX=3673 GN=LOC111004551 PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.92e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. ExPASy TrEMBL
Match: A0A6J1K5M6 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492502 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.74e-32
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. ExPASy TrEMBL
Match: A0A6J1KUK4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111496537 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.74e-32
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. ExPASy TrEMBL
Match: A0A6J1HEN4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111462357 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.74e-32
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. ExPASy TrEMBL
Match: A0A6J1GH36 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111454117 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.74e-32
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 57
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYT
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYT 57

[Close]

BLAST of MC08g0022 vs. TAIR 10
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 106.7 bits (265), Expect = 6.3e-24
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTY 57
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWISA LLVTPVVGTY
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTY 56

[Close]

BLAST of MC08g0022 vs. TAIR 10
Match: AT5G05370.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-23
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYT 58
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWIS +LLV PVVGTY+
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYS 57

The following BLAST results are available for this feature:

BLAST of MC08g0022 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG91	8.9e-23	87.50	Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q9FLB7	4.4e-22	82.46	Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P46269	2.9e-21	78.95	Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2	[more]

BLAST of MC08g0022 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131282.1	3.97e-34	100.00	cytochrome b-c1 complex subunit 8-like [Momordica charantia]	[more]
XP_038886592.1	2.69e-32	92.98	cytochrome b-c1 complex subunit 8-like [Benincasa hispida]	[more]
XP_022951208.1	7.73e-32	91.23	cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cyto...	[more]
XP_022961649.1	7.73e-32	91.23	cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cyto...	[more]
XP_004142978.1	1.56e-31	91.23	cytochrome b-c1 complex subunit 8 [Cucumis sativus]	[more]

BLAST of MC08g0022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQK7	1.92e-34	100.00	cytochrome b-c1 complex subunit 8-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1K5M6	3.74e-32	91.23	cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114925...	[more]
A0A6J1KUK4	3.74e-32	91.23	cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114965...	[more]
A0A6J1HEN4	3.74e-32	91.23	cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1GH36	3.74e-32	91.23	cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of MC08g0022 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10860.1	6.3e-24	87.50	Cytochrome b-c1 complex, subunit 8 protein	[more]
AT5G05370.1	3.1e-23	82.46	Cytochrome b-c1 complex, subunit 8 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036642	Cytochrome b-c1 complex subunit 8 superfamily	GENE3D	1.20.5.210		coord: 2..57 e-value: 1.4E-6 score: 30.3
IPR036642	Cytochrome b-c1 complex subunit 8 superfamily	SUPERFAMILY	81508	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 10..47
IPR020101	Cytochrome b-c1 complex subunit 8, plants	PFAM	PF10890	Cyt_b-c1_8	coord: 1..56 e-value: 2.0E-27 score: 95.4
IPR020101	Cytochrome b-c1 complex subunit 8, plants	PANTHER	PTHR34559	CYTOCHROME B-C1 COMPLEX SUBUNIT 8	coord: 1..57
None	No IPR available	PANTHER	PTHR34559:SF3	CYTOCHROME B-C1 COMPLEX, SUBUNIT 8	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0022.1	MC08g0022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
cellular_component	GO:0070469	respirasome