MC07g_new0251 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0251
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 8579688 .. 8580137 (-)
RNA-Seq Expression	MC07g_new0251
Synteny	MC07g_new0251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATATGGATTTCTCGTACCCCTTTAAGGTTAGCTATACTGGGAAAATTGTTCGTGAGGCTGCTCTCACGGCCTATAAAGTCAGCTCGGCTCAGATGCTGCAGACGAGTCAAGGATCCTTCCTGGAAAAGTCGGGCGACTACGTGCAGTGTCGCATTGACGACTTACCTCGACTCCACTTCACAGCCTGCTACACAAGTGGAATCATTAGTCAAGAGCTGAGTGTAAGGAAGGCTAGTTTTACCCGCAAGCGCGAGACGACTAGGCAGACTGAGGAGTTGAGGGCTGAGATGGTCAACGTCTGCAAGGAGATGGACGAGCTAATAAAAACAATCACATCTCAAGAAAACCTCCTAAGTCAGGCTCGCGTCGATATACGTGCGATGGAGGCAAAAGCCAAAGCGGCTGAGAAACGCGCGGATAAGGAAGCGGCTGAGTGTGCTTAG

mRNA sequence

ATGTCGGATATGGATTTCTCGTACCCCTTTAAGGTTAGCTATACTGGGAAAATTGTTCGTGAGGCTGCTCTCACGGCCTATAAAGTCAGCTCGGCTCAGATGCTGCAGACGAGTCAAGGATCCTTCCTGGAAAAGTCGGGCGACTACGTGCAGTGTCGCATTGACGACTTACCTCGACTCCACTTCACAGCCTGCTACACAAGTGGAATCATTAGTCAAGAGCTGAGTGTAAGGAAGGCTAGTTTTACCCGCAAGCGCGAGACGACTAGGCAGACTGAGGAGTTGAGGGCTGAGATGGTCAACGTCTGCAAGGAGATGGACGAGCTAATAAAAACAATCACATCTCAAGAAAACCTCCTAAGTCAGGCTCGCGTCGATATACGTGCGATGGAGGCAAAAGCCAAAGCGGCTGAGAAACGCGCGGATAAGGAAGCGGCTGAGTGTGCTTAG

Coding sequence (CDS)

ATGTCGGATATGGATTTCTCGTACCCCTTTAAGGTTAGCTATACTGGGAAAATTGTTCGTGAGGCTGCTCTCACGGCCTATAAAGTCAGCTCGGCTCAGATGCTGCAGACGAGTCAAGGATCCTTCCTGGAAAAGTCGGGCGACTACGTGCAGTGTCGCATTGACGACTTACCTCGACTCCACTTCACAGCCTGCTACACAAGTGGAATCATTAGTCAAGAGCTGAGTGTAAGGAAGGCTAGTTTTACCCGCAAGCGCGAGACGACTAGGCAGACTGAGGAGTTGAGGGCTGAGATGGTCAACGTCTGCAAGGAGATGGACGAGCTAATAAAAACAATCACATCTCAAGAAAACCTCCTAAGTCAGGCTCGCGTCGATATACGTGCGATGGAGGCAAAAGCCAAAGCGGCTGAGAAACGCGCGGATAAGGAAGCGGCTGAGTGTGCTTAG

Protein sequence

MSDMDFSYPFKVSYTGKIVREAALTAYKVSSAQMLQTSQGSFLEKSGDYVQCRIDDLPRLHFTACYTSGIISQELSVRKASFTRKRETTRQTEELRAEMVNVCKEMDELIKTITSQENLLSQARVDIRAMEAKAKAAEKRADKEAAECA

Homology

[Close]

BLAST of MC07g_new0251 vs. NCBI nr
Match: XP_022159051.1 (uncharacterized protein LOC111025493 [Momordica charantia])

HSP 1 Score: 50.1 bits (118), Expect = 2.09e-04
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 4  MDFSYPFKVSYTGKIVREAALTAYKVSSAQMLQTSQGSFLEKSGDYV 50
          MDFSY FK+++  + +R+AAL AYK SS  +L  ++G+FLEK G  V
Sbjct: 1  MDFSYSFKLNFMEESIRDAALKAYKNSSEWVLSLNEGAFLEKLGHVV 47

[Close]

BLAST of MC07g_new0251 vs. ExPASy TrEMBL
Match: A0A6J1E2R6 (uncharacterized protein LOC111025493 OS=Momordica charantia OX=3673 GN=LOC111025493 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.01e-04
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 4  MDFSYPFKVSYTGKIVREAALTAYKVSSAQMLQTSQGSFLEKSGDYV 50
          MDFSY FK+++  + +R+AAL AYK SS  +L  ++G+FLEK G  V
Sbjct: 1  MDFSYSFKLNFMEESIRDAALKAYKNSSEWVLSLNEGAFLEKLGHVV 47

The following BLAST results are available for this feature:

BLAST of MC07g_new0251 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0251 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159051.1	2.09e-04	51.06	uncharacterized protein LOC111025493 [Momordica charantia]	[more]

BLAST of MC07g_new0251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2R6	1.01e-04	51.06	uncharacterized protein LOC111025493 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of MC07g_new0251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0251.1	MC07g_new0251.1	mRNA