MC07g_new0196 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0196
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 6829648 .. 6830107 (+)
RNA-Seq Expression	MC07g_new0196
Synteny	MC07g_new0196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGATGACTATGGAAGAGTTGGTGAACATTGTTCTGACTCATAGCTCTAAGATGACTAGCATGAATGAGCCAGCTTCAACACCACCTAGACTCAACATCATAGACAGACTTGCACTGACCTCAACATCAAAGGATGAACCTGGTCTGTCTATTTGTATGCATTAGCTTAACTCACTCCTAACCTCCCTAGACACTGCAAAGAACACATAATGAAAACAGCCTGGTAAGGGCTGTACAAGGGAACGAGAAAGGAGTTTGATAAAAAAGAGTTTGGGAATGTCCCGCTTAGTTAACAAACATCGAGTTTGGAGTCGGGGCAGCATGGATACGAGACGAGGGAAGTTCAGTTTGGAATCATTGTGGTTTTCTATCTTCAGATTACCAAATTGGAGAATCACCAAGGCCTTTCAGCGATTCGACGCGCCCCCCTAAGCTAGACGCTTCACCTACCTGA

mRNA sequence

ATGAACAAGATGACTATGGAAGAGTTGGTGAACATTGTTCTGACTCATAGCTCTAAGATGACTAGCATGAATGAGCCAGCTTCAACACCACCTAGACTCAACATCATAGACAGACTTGCACTGACCTCAACATCAAAGGATGAACCTGATTACCAAATTGGAGAATCACCAAGGCCTTTCAGCGATTCGACGCGCCCCCCTAAGCTAGACGCTTCACCTACCTGA

Coding sequence (CDS)

ATGAACAAGATGACTATGGAAGAGTTGGTGAACATTGTTCTGACTCATAGCTCTAAGATGACTAGCATGAATGAGCCAGCTTCAACACCACCTAGACTCAACATCATAGACAGACTTGCACTGACCTCAACATCAAAGGATGAACCTGATTACCAAATTGGAGAATCACCAAGGCCTTTCAGCGATTCGACGCGCCCCCCTAAGCTAGACGCTTCACCTACCTGA

Protein sequence

MNKMTMEELVNIVLTHSSKMTSMNEPASTPPRLNIIDRLALTSTSKDEPDYQIGESPRPFSDSTRPPKLDASPT

Homology

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BLAST of MC07g_new0196 vs. NCBI nr
Match: DAD25578.1 (TPA_asm: hypothetical protein HUJ06_027042 [Nelumbo nucifera] >DAD25667.1 TPA_asm: hypothetical protein HUJ06_027131 [Nelumbo nucifera] >DAD25692.1 TPA_asm: hypothetical protein HUJ06_027156 [Nelumbo nucifera])

HSP 1 Score: 81.3 bits (199), Expect = 2.77e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 1  MNKMTMEELVNIVLTHSSKMTSMNEPASTPPRLNIIDRLALTST 44
          MNK+TMEELVNIVLTHSSKMTSMNEPASTPPRL IIDRLALTST
Sbjct: 27 MNKITMEELVNIVLTHSSKMTSMNEPASTPPRLLIIDRLALTST 70

The following BLAST results are available for this feature:

BLAST of MC07g_new0196 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0196 vs. NCBI nr


Match Name	E-value	Identity	Description
DAD25578.1	2.77e-18	95.45	TPA_asm: hypothetical protein HUJ06_027042 [Nelumbo nucifera] >DAD25667.1 TPA_as...	[more]

BLAST of MC07g_new0196 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC07g_new0196 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0196.1	MC07g_new0196.1	mRNA