MC07g_new0191 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0191
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING/U-box superfamily protein
Location	MC07: 6812673 .. 6813625 (-)
RNA-Seq Expression	MC07g_new0191
Synteny	MC07g_new0191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGCGTGGCGATAGGCTTCGCTTCTACGACTGCCTCCCCAGCCGTTGCAAACACTGAGCGAGAACGGTAAGGGGCGCACAAACAATGTCGTTGCGCGGGGATGCGATTCGCCAAGCTGGGGCAAACAAAGCCGTCCGGCCCCCCCCACCGGATTAGGAATGCGAAGGCCTTTCTCCTTCGAAAGGAGACCCGGGAAAGAAAGAGCTATGCTATTGACCGACCCTTTCGTAGTGACTTCGAATCAATAGGCCTCTCCTTTTTTCTCATTTTGTTTGAGGCGGGCCGAATAGAGAATGAAATGCAGAAATAGGGGAAGGGTTCCAAACCTTTTTTTTTTGAAAAAGGGCAGCTCGCCCTACCGAAGTACCAAAGGCTTTCGGGGCTTACACCCCCCGACCTAAAAAAAGGCTTTCAGTAGCGTAGAATCTAAGCCTTTTGAAGCGCCAGTAGGTGTAGCAGTGGCCACACCAACCCTTTCGTTCTTATCGCTCCGGGTTCCGATCTATATGACCTCCGGGCGGTACAAAGTCAACCTCTTCCGTAGAGGCAGGCAGGTAGTAACCTAACCTTTAAGAGTCTGTTCAAGGGGGGAGCCCTCTGACAATGGAAAGATCTCCGTGCGTGGCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCCTCCCCGGTCCCACGAAGATCTCTACGTACTTGTCCAGTCCAGGACAACAGAGATCTTCCGGTCTGCGTGCGTGGGAGCACAGCTCAAACAAAGAAGAGTCTGGTCTGAATTCAGGCCCGGCCTGCCCGTCTGCTGCTAGGTCCGGGAATGGCGCCAGGCGAGGGCGCCGCTATGCCCCGCAGCTCTGCTGCGACCTTCATTTGATTCCGACGGCCGGCATAGATCTCATGAGACCCGCCCACTATTACGACGAAAAAAGCCCTGCCCTTTTCCTTCGCTACTAG

mRNA sequence

ATGGTCGGCGTGGCGATAGGCTTCGCTTCTACGACTGCCTCCCCAGCCGTTGCAAACACTGAGCGAGAACGTCCAGGACAACAGAGATCTTCCGGTCTGCGTGCGTGGGAGCACAGCTCAAACAAAGAAGAGTCTGGTCTGAATTCAGGCCCGGCCTGCCCGTCTGCTGCTAGGTCCGGGAATGGCGCCAGGCGAGGGCGCCGCTATGCCCCGCAGCTCTGCTGCGACCTTCATTTGATTCCGACGGCCGGCATAGATCTCATGAGACCCGCCCACTATTACGACGAAAAAAGCCCTGCCCTTTTCCTTCGCTACTAG

Coding sequence (CDS)

ATGGTCGGCGTGGCGATAGGCTTCGCTTCTACGACTGCCTCCCCAGCCGTTGCAAACACTGAGCGAGAACGTCCAGGACAACAGAGATCTTCCGGTCTGCGTGCGTGGGAGCACAGCTCAAACAAAGAAGAGTCTGGTCTGAATTCAGGCCCGGCCTGCCCGTCTGCTGCTAGGTCCGGGAATGGCGCCAGGCGAGGGCGCCGCTATGCCCCGCAGCTCTGCTGCGACCTTCATTTGATTCCGACGGCCGGCATAGATCTCATGAGACCCGCCCACTATTACGACGAAAAAAGCCCTGCCCTTTTCCTTCGCTACTAG

Protein sequence

MVGVAIGFASTTASPAVANTERERPGQQRSSGLRAWEHSSNKEESGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLIPTAGIDLMRPAHYYDEKSPALFLRY

Homology

[Close]

BLAST of MC07g_new0191 vs. NCBI nr
Match: TYI32627.1 (hypothetical protein ES332_A04G077300v1 [Gossypium tomentosum])

HSP 1 Score: 77.8 bits (190), Expect = 5.01e-16
Identity = 48/87 (55.17%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 14 SPAVANTERERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQ 73
          SP    T    PGQ RSSGLRAWE    +   SGLNSG A PSAARS NGARRGRRYAP 
Sbjct: 24 SPTKIPTYLSSPGQLRSSGLRAWEQLKQRRVWSGLNSGLARPSAARSRNGARRGRRYAPL 83

Query: 74 LCCDLHLIPTAGIDLMRPAHYYDEKSP 99
          LCCD            RP  Y  E  P
Sbjct: 84 LCCD------------RPPDYVKESRP 98

[Close]

BLAST of MC07g_new0191 vs. NCBI nr
Match: GFS28590.1 (hypothetical protein Acr_00g0002670 [Actinidia rufa])

HSP 1 Score: 67.0 bits (162), Expect = 2.32e-10
Identity = 41/79 (51.90%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 22  RERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLI 81
           R  PGQ RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LCC     
Sbjct: 55  RGSPGQVRSSGLHAWEQLKQRRVWSGLNSGTVRPSAARPGNGARRGLSYAPLLCCG---- 114

Query: 82  PTAGIDLMRPAHYYDEKSP 99
                   RP  Y  E  P
Sbjct: 115 --------RPPDYAKESRP 121

[Close]

BLAST of MC07g_new0191 vs. NCBI nr
Match: GFY85168.1 (RING/U-box superfamily protein [Actinidia rufa])

HSP 1 Score: 67.0 bits (162), Expect = 3.01e-10
Identity = 41/79 (51.90%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 22  RERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLI 81
           R  PGQ RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LCC     
Sbjct: 55  RGSPGQVRSSGLHAWEQLKQRRVWSGLNSGTVRPSAARPGNGARRGLSYAPLLCCG---- 114

Query: 82  PTAGIDLMRPAHYYDEKSP 99
                   RP  Y  E  P
Sbjct: 115 --------RPPDYAKESRP 121

[Close]

BLAST of MC07g_new0191 vs. NCBI nr
Match: KAE8663210.1 (Detected protein of unknown function [Hibiscus syriacus])

HSP 1 Score: 63.9 bits (154), Expect = 3.41e-09
Identity = 36/50 (72.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 22  RERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYA 70
           R  PGQ RSS LRAWE    +   SGLNSGPA PSAAR GNGARRGRRYA
Sbjct: 109 RGSPGQLRSSSLRAWEQLKQRRVWSGLNSGPARPSAARFGNGARRGRRYA 158

[Close]

BLAST of MC07g_new0191 vs. NCBI nr
Match: KYP33254.1 (hypothetical protein KK1_045899 [Cajanus cajan])

HSP 1 Score: 58.9 bits (141), Expect = 5.43e-09
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 77  LHLIPTAGIDLMRPAHYYDEKSPALFLRY 105
           LHLIPTAGIDLMRPAHYY EKSPA  LRY
Sbjct: 41  LHLIPTAGIDLMRPAHYYYEKSPAFSLRY 69

[Close]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL
Match: A0A5D2QVI1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G077300v1 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.43e-16
Identity = 48/87 (55.17%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 14 SPAVANTERERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQ 73
          SP    T    PGQ RSSGLRAWE    +   SGLNSG A PSAARS NGARRGRRYAP 
Sbjct: 24 SPTKIPTYLSSPGQLRSSGLRAWEQLKQRRVWSGLNSGLARPSAARSRNGARRGRRYAPL 83

Query: 74 LCCDLHLIPTAGIDLMRPAHYYDEKSP 99
          LCCD            RP  Y  E  P
Sbjct: 84 LCCD------------RPPDYVKESRP 98

[Close]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL
Match: A0A7J0D7M3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0002670 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.12e-10
Identity = 41/79 (51.90%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 22  RERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLI 81
           R  PGQ RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LCC     
Sbjct: 55  RGSPGQVRSSGLHAWEQLKQRRVWSGLNSGTVRPSAARPGNGARRGLSYAPLLCCG---- 114

Query: 82  PTAGIDLMRPAHYYDEKSP 99
                   RP  Y  E  P
Sbjct: 115 --------RPPDYAKESRP 121

[Close]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL
Match: A0A7J0EFA7 (RING/U-box superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_03g0019420 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.46e-10
Identity = 41/79 (51.90%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 22  RERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLI 81
           R  PGQ RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LCC     
Sbjct: 55  RGSPGQVRSSGLHAWEQLKQRRVWSGLNSGTVRPSAARPGNGARRGLSYAPLLCCG---- 114

Query: 82  PTAGIDLMRPAHYYDEKSP 99
                   RP  Y  E  P
Sbjct: 115 --------RPPDYAKESRP 121

[Close]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL
Match: A0A6A2X3H8 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113021pilonHSYRG00027 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.65e-09
Identity = 36/50 (72.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 22  RERPGQQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYA 70
           R  PGQ RSS LRAWE    +   SGLNSGPA PSAAR GNGARRGRRYA
Sbjct: 109 RGSPGQLRSSSLRAWEQLKQRRVWSGLNSGPARPSAARFGNGARRGRRYA 158

[Close]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL
Match: A0A151QSM8 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_045899 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.63e-09
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 77  LHLIPTAGIDLMRPAHYYDEKSPALFLRY 105
           LHLIPTAGIDLMRPAHYY EKSPA  LRY
Sbjct: 41  LHLIPTAGIDLMRPAHYYYEKSPAFSLRY 69

The following BLAST results are available for this feature:

BLAST of MC07g_new0191 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0191 vs. NCBI nr


Match Name	E-value	Identity	Description
TYI32627.1	5.01e-16	55.17	hypothetical protein ES332_A04G077300v1 [Gossypium tomentosum]	[more]
GFS28590.1	2.32e-10	51.90	hypothetical protein Acr_00g0002670 [Actinidia rufa]	[more]
GFY85168.1	3.01e-10	51.90	RING/U-box superfamily protein [Actinidia rufa]	[more]
KAE8663210.1	3.41e-09	72.00	Detected protein of unknown function [Hibiscus syriacus]	[more]
KYP33254.1	5.43e-09	89.66	hypothetical protein KK1_045899 [Cajanus cajan]	[more]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2QVI1	2.43e-16	55.17	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G077300v1 P...	[more]
A0A7J0D7M3	1.12e-10	51.90	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0002670 PE=4 SV=1	[more]
A0A7J0EFA7	1.46e-10	51.90	RING/U-box superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_03g0019420 PE=...	[more]
A0A6A2X3H8	1.65e-09	72.00	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113021pilon...	[more]
A0A151QSM8	2.63e-09	89.66	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_045899 PE=4 SV=1	[more]

BLAST of MC07g_new0191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0191.1	MC07g_new0191.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane