MC07g_new0167 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0167
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 6173845 .. 6174416 (-)
RNA-Seq Expression	MC07g_new0167
Synteny	MC07g_new0167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGTCCAGCTGGAGTCAGACTCTTCAAGCTATTGAGCTTCTCAAAGGGGACAAAGCGATTTGGTTGGAGCTTGGCGCCTGGGTTGAGGATATCAGAAATTCCATGGAAGATTTCACCCAGATTTCATTCTTACATGTGAGAAGAGAAGGCAATCAGATTGCTCATAAGCTCGCGTCGAATGTTGTTGCCTCTGTGGATTTATGCGTTTCTTCTTTTACTTTCCCAATCTTGATTATTAATGATTCTATAAGAGACTGTAATAGCCTTTTAGGCTTGCGATAGTTTTCTAATAAATTTTCCTTCCTAAAAAAAACATTTATATTTAAAATATTAATGGTATATCAGCATTTAAATTAGGTATATAAATATTACTTTTCTCTCTACTCTAGTATGAGAGGTTTTTTCTATTAACCACAGTTATTCAACCTTGCTGCTTCGTGCCTACTGTTGTTAGACCTCTTCAAAGGGCCACTACGGAGCTTCTTGATGAGTGGAAGAACTTCACACTTACCACTGATGAAGTGAAACGTCTGTGGACATTGACTCGTCTTCTATCTTGGGAATAG

mRNA sequence

ATGGATCCGTCCAGCTGGAGTCAGACTCTTCAAGCTATTGAGCTTCTCAAAGGGGACAAAGCGATTTGGTTGGAGCTTGGCGCCTGGGTTGAGGATATCAGAAATTCCATGGAAGATTTCACCCAGATTTCATTCTTACATGTGAGAAGAGAAGGCAATCAGATTGCTCATAAGCTCGCGTCGAATGTTGTTGCCTCTGTGGATTTATGCGTTTCTTCTTTTACTTTCCCAATCTTGATTATTAATGATTCTATAAGAGACTTTATTCAACCTTGCTGCTTCGTGCCTACTGTTGTTAGACCTCTTCAAAGGGCCACTACGGAGCTTCTTGATGAGTGGAAGAACTTCACACTTACCACTGATGAAGTGAAACGTCTGTGGACATTGACTCGTCTTCTATCTTGGGAATAG

Coding sequence (CDS)

ATGGATCCGTCCAGCTGGAGTCAGACTCTTCAAGCTATTGAGCTTCTCAAAGGGGACAAAGCGATTTGGTTGGAGCTTGGCGCCTGGGTTGAGGATATCAGAAATTCCATGGAAGATTTCACCCAGATTTCATTCTTACATGTGAGAAGAGAAGGCAATCAGATTGCTCATAAGCTCGCGTCGAATGTTGTTGCCTCTGTGGATTTATGCGTTTCTTCTTTTACTTTCCCAATCTTGATTATTAATGATTCTATAAGAGACTTTATTCAACCTTGCTGCTTCGTGCCTACTGTTGTTAGACCTCTTCAAAGGGCCACTACGGAGCTTCTTGATGAGTGGAAGAACTTCACACTTACCACTGATGAAGTGAAACGTCTGTGGACATTGACTCGTCTTCTATCTTGGGAATAG

Protein sequence

MDPSSWSQTLQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVASVDLCVSSFTFPILIINDSIRDFIQPCCFVPTVVRPLQRATTELLDEWKNFTLTTDEVKRLWTLTRLLSWE

Homology

[Close]

BLAST of MC07g_new0167 vs. NCBI nr
Match: XP_035541483.1 (uncharacterized protein LOC118344571 [Juglans regia])

HSP 1 Score: 49.3 bits (116), Expect = 7.21e-04
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 10  LQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVASVDL 69
           LQ I+ +      W   G  +ED++  +  F   S +H+RREGN+ AH+LA N + +   
Sbjct: 137 LQVIQAINSRSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNKAAHELAKNALVTSTS 196

Query: 70  CVSSFTFPILIIN 82
            +     P  IIN
Sbjct: 197 SLDVDCIPSCIIN 209

[Close]

BLAST of MC07g_new0167 vs. NCBI nr
Match: XP_030922948.1 (uncharacterized protein LOC115949812 [Quercus lobata])

HSP 1 Score: 48.9 bits (115), Expect = 7.80e-04
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 9   TLQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVASVD 68
           +L+ ++ +   +      G  +++I  S  +FT+ISF HVRREGN++AH LA   V S D
Sbjct: 103 SLRVVQAITNKRENQTFFGHVIKEIHGSCSNFTRISFQHVRREGNKLAHALARRAVLSAD 162

[Close]

BLAST of MC07g_new0167 vs. NCBI nr
Match: KAF5447347.1 (hypothetical protein F2P56_032905 [Juglans regia])

HSP 1 Score: 49.3 bits (116), Expect = 8.09e-04
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 10  LQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVASVDL 69
           LQ I+ +      W   G  +ED++  +  F   S +H+RREGN+ AH+LA N + +   
Sbjct: 154 LQVIQAINSRSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNKAAHELAKNALVTSTS 213

Query: 70  CVSSFTFPILIIN 82
            +     P  IIN
Sbjct: 214 SLDVDCIPSCIIN 226

[Close]

BLAST of MC07g_new0167 vs. NCBI nr
Match: XP_022142956.1 (uncharacterized protein LOC111012950 [Momordica charantia])

HSP 1 Score: 48.5 bits (114), Expect = 9.68e-04
Identity = 26/70 (37.14%), Postives = 35/70 (50.00%), Query Frame = 0


Query: 7   SQTLQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVAS 66
           S +LQ I LL  D   W     W+EDIR    +F   +FLHV R  N+ A ++AS  V  
Sbjct: 102 SDSLQLINLLTEDPISWCGSNVWLEDIRVLARNFIDFNFLHVCRSSNKAARRVASFAVGF 161

Query: 67  VDLCVSSFTF 76
            + C  +  F
Sbjct: 162 DNPCFWALIF 171

[Close]

BLAST of MC07g_new0167 vs. ExPASy TrEMBL
Match: A0A6P9EAW2 (uncharacterized protein LOC118344571 OS=Juglans regia OX=51240 GN=LOC118344571 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.49e-04
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 10  LQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVASVDL 69
           LQ I+ +      W   G  +ED++  +  F   S +H+RREGN+ AH+LA N + +   
Sbjct: 137 LQVIQAINSRSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNKAAHELAKNALVTSTS 196

Query: 70  CVSSFTFPILIIN 82
            +     P  IIN
Sbjct: 197 SLDVDCIPSCIIN 209

[Close]

BLAST of MC07g_new0167 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.68e-04
Identity = 26/70 (37.14%), Postives = 35/70 (50.00%), Query Frame = 0


Query: 7   SQTLQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVAS 66
           S +LQ I LL  D   W     W+EDIR    +F   +FLHV R  N+ A ++AS  V  
Sbjct: 102 SDSLQLINLLTEDPISWCGSNVWLEDIRVLARNFIDFNFLHVCRSSNKAARRVASFAVGF 161

Query: 67  VDLCVSSFTF 76
            + C  +  F
Sbjct: 162 DNPCFWALIF 171

[Close]

BLAST of MC07g_new0167 vs. ExPASy TrEMBL
Match: A0A2I4FDF2 (uncharacterized protein LOC108997755 OS=Juglans regia OX=51240 GN=LOC108997755 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.37e-04
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 10  LQAIELLKGDKAIWLELGAWVEDIRNSMEDFTQISFLHVRREGNQIAHKLASNVVASVDL 69
           LQ I+ +      W   G  +ED++  +  F   S +H+RREGN+ AH+LA N + +   
Sbjct: 653 LQVIQAINSRSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNKAAHELARNALVTSTS 712

Query: 70  CVSSFTFPILIIN 82
            +     P  IIN
Sbjct: 713 SLDVDCIPSCIIN 725

The following BLAST results are available for this feature:

BLAST of MC07g_new0167 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0167 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_035541483.1	7.21e-04	32.88	uncharacterized protein LOC118344571 [Juglans regia]	[more]
XP_030922948.1	7.80e-04	38.33	uncharacterized protein LOC115949812 [Quercus lobata]	[more]
KAF5447347.1	8.09e-04	32.88	hypothetical protein F2P56_032905 [Juglans regia]	[more]
XP_022142956.1	9.68e-04	37.14	uncharacterized protein LOC111012950 [Momordica charantia]	[more]

BLAST of MC07g_new0167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9EAW2	3.49e-04	32.88	uncharacterized protein LOC118344571 OS=Juglans regia OX=51240 GN=LOC118344571 P...	[more]
A0A6J1CNR4	4.68e-04	37.14	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A2I4FDF2	8.37e-04	32.88	uncharacterized protein LOC108997755 OS=Juglans regia OX=51240 GN=LOC108997755 P...	[more]

BLAST of MC07g_new0167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 11..61 e-value: 1.2E-8 score: 34.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 7..68 e-value: 2.5E-5 score: 26.2
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 12..60 e-value: 3.1485E-9 score: 49.62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0167.1	MC07g_new0167.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity