MC07g_new0157 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0157
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem I assembly protein Ycf4
Location	MC07: 5710806 .. 5711618 (-)
RNA-Seq Expression	MC07g_new0157
Synteny	MC07g_new0157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGGTATCATGGCCGCGATCTTTGTGAAAACGGCAGTACCTGCCTCTATTTCTCTTATCCGGGTTCCTCGAAGTTTCCAAGGTGCTTGAGGAACTTTTCTATGACAATCTACTCAATGTTGGTTAATATTTCTGAGATTTTAATGGTGATTGGAGTGTAACGCTTTATCCTTTTTTTAGGTTCATTAGGGTTTTTATTGGTTGGAACTTCCAGCTATCTTGGTAGGGATTTGATATCTTTATTTCCGTCTCAGCAAATAATTTTTTTTCCACAGGGGATCGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGAAAAATGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGGATAAAACTGAAATGAAAGAATCGTCTTTTTTATAGACCATAGTAATAGTATAACTTAACTGGAATTTCTTCAGAATGATCATTTGAGCCAAAGCAGACGTATACGGAACCGCCAGAAAACAGT

mRNA sequence

ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

Coding sequence (CDS)

ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

Protein sequence

MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF

Homology

[Close]

BLAST of MC07g_new0157 vs. ExPASy Swiss-Prot
Match: A0ZZ46 (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-63
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy Swiss-Prot
Match: Q2L913 (Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-63
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-62
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy Swiss-Prot
Match: Q09G35 (Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-62
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF MKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFFMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEG+Y RRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGLYPRRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy Swiss-Prot
Match: Q2MIH6 (Photosystem I assembly protein Ycf4 OS=Solanum bulbocastanum OX=147425 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-62
Identity = 113/119 (94.96%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFL+KDI
Sbjct: 66  MSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLIKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QS+RIEVKEGIYARRVLYM+IRGQG+IPLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. NCBI nr
Match: YP_009752592.1 (photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QIT05073.1 photosystem I assembly protein Ycf4 [Trichosanthes kirilowii] >QJD26482.1 Ycf4 [Trichosanthes kirilowii var. japonica] >QJD26656.1 Ycf4 [Trichosanthes rosthornii] >QIT04988.1 photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QJD26307.1 Ycf4 [Trichosanthes kirilowii])

HSP 1 Score: 247 bits (631), Expect = 8.84e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. NCBI nr
Match: YP_009751749.1 (photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum] >QIT04482.1 photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum])

HSP 1 Score: 247 bits (631), Expect = 8.84e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. NCBI nr
Match: YP_009752170.1 (photosystem I assembly protein Ycf4 [Linnaeosicyos amara] >QIT05580.1 photosystem I assembly protein Ycf4 [Linnaeosicyos amara])

HSP 1 Score: 247 bits (631), Expect = 8.84e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. NCBI nr
Match: YP_009456072.1 (photosystem I assembly protein Ycf4 [Momordica charantia] >YP_009674402.1 photosystem I assembly protein Ycf4 [Siraitia grosvenorii] >YP_009738212.1 photosystem I assembly protein Ycf4 [Siraitia siamensis] >YP_009751917.1 photosystem I assembly protein Ycf4 [Cyclanthera pedata] >YP_009752254.1 photosystem I assembly protein Ycf4 [Trichosanthes baviensis] >YP_009753185.1 photosystem I assembly protein Ycf4 [Trichosanthes truncata] >YP_009753269.1 photosystem I assembly protein Ycf4 [Nothoalsomitra suberosa] >YP_009753800.1 photosystem I assembly protein Ycf4 [Trichosanthes pilosa] >YP_009753885.1 photosystem I assembly protein Ycf4 [Trichosanthes lobata] >QIT04061.1 photosystem I assembly protein Ycf4 [Luffa aegyptiaca] >AUJ21839.1 photosystem I assembly protein Ycf4 [Momordica charantia] >QDK59400.1 photosystem I assembly protein Ycf4 [Siraitia grosvenorii] >QIB71516.1 photosystem I assembly protein Ycf4 [Siraitia grosvenorii] >QIB71604.1 photosystem I assembly protein Ycf4 [Siraitia siamensis])

HSP 1 Score: 247 bits (631), Expect = 8.84e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. NCBI nr
Match: TYJ27412.1 (hypothetical protein E1A91_A07G186100v1 [Gossypium mustelinum])

HSP 1 Score: 244 bits (623), Expect = 1.66e-81
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 1   MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 61  QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 119

[Close]

BLAST of MC07g_new0157 vs. ExPASy TrEMBL
Match: A0A6H0ESZ3 (Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii OX=3677 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 4.28e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy TrEMBL
Match: A0A6M3RTZ8 (Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii var. japonica OX=61011 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 4.28e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy TrEMBL
Match: A0A6H0EP62 (Photosystem I assembly protein Ycf4 OS=Luffa aegyptiaca OX=3670 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 4.28e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy TrEMBL
Match: A0A514YKU3 (Photosystem I assembly protein Ycf4 OS=Siraitia grosvenorii OX=190515 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 4.28e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. ExPASy TrEMBL
Match: A0A6H0EPD9 (Photosystem I assembly protein Ycf4 OS=Trichosanthes baviensis OX=1054457 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 4.28e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 119
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MC07g_new0157 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 221.9 bits (564), Expect = 2.8e-58
Identity = 108/119 (90.76%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFIS YLWCTILWNVGSGYD FDRKEGIV IFRWGFPGK+RRIFLRF MKDI
Sbjct: 66  MSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRFFMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T REIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

The following BLAST results are available for this feature:

BLAST of MC07g_new0157 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0ZZ46	1.3e-63	97.48	Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3...	[more]
Q2L913	1.3e-63	97.48	Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 S...	[more]
Q2QD78	1.8e-62	98.32	Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1	[more]
Q09G35	3.1e-62	95.80	Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=...	[more]
Q2MIH6	3.1e-62	94.96	Photosystem I assembly protein Ycf4 OS=Solanum bulbocastanum OX=147425 GN=ycf4 P...	[more]

BLAST of MC07g_new0157 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752592.1	8.84e-82	100.00	photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QIT05073.1 photo...	[more]
YP_009751749.1	8.84e-82	100.00	photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum] >QIT04482.1 ph...	[more]
YP_009752170.1	8.84e-82	100.00	photosystem I assembly protein Ycf4 [Linnaeosicyos amara] >QIT05580.1 photosyste...	[more]
YP_009456072.1	8.84e-82	100.00	photosystem I assembly protein Ycf4 [Momordica charantia] >YP_009674402.1 photos...	[more]
TYJ27412.1	1.66e-81	97.48	hypothetical protein E1A91_A07G186100v1 [Gossypium mustelinum]	[more]

BLAST of MC07g_new0157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ESZ3	4.28e-82	100.00	Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii OX=3677 GN=ycf4 P...	[more]
A0A6M3RTZ8	4.28e-82	100.00	Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii var. japonica OX=...	[more]
A0A6H0EP62	4.28e-82	100.00	Photosystem I assembly protein Ycf4 OS=Luffa aegyptiaca OX=3670 GN=ycf4 PE=3 SV=...	[more]
A0A514YKU3	4.28e-82	100.00	Photosystem I assembly protein Ycf4 OS=Siraitia grosvenorii OX=190515 GN=ycf4 PE...	[more]
A0A6H0EPD9	4.28e-82	100.00	Photosystem I assembly protein Ycf4 OS=Trichosanthes baviensis OX=1054457 GN=ycf...	[more]

BLAST of MC07g_new0157 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00520.1	2.8e-58	90.76	unfolded protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003359	Photosystem I Ycf4, assembly	PFAM	PF02392	Ycf4	coord: 1..117 e-value: 3.9E-53 score: 179.6
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 1..119
None	No IPR available	PANTHER	PTHR33288:SF4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0157.1	MC07g_new0157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid