MC07g_new0128 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0128
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 4530964 .. 4531697 (-)
RNA-Seq Expression	MC07g_new0128
Synteny	MC07g_new0128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGTATGCGTCTGAAGAGGGTTGAGAAACGTTTGAAGCACATGGACAAGCGCATGGACGATAGGATGGGAGGTATTGAGGCTGAATTAAAATCCATCCGAAAATTCTTGCGAAGAATCGCTAAGGTAATAATAGTTTTCACCTACGATTTCTTTTTCACTAATTGAGAACTAACTTGTCCTACATTATATAGGGTTTACCTATCGACCCGAATGACATGAGAAGAGATAGTAGCGGAGATCGTACTGCGCCAGGAGATGGACCTAGTGATGCACCCAATGATGGACCCAGTGGCGCTGATGGTGGTCAGGGTGATGGTCCTGATGCTATGGATGGGGAAGCCACAGATGACATGATCATCGATCTCTCGGATGTGAATGTGCACAAGACAGAAGCACTTCATTCTGGTCATGATAGGGACCAGGCTCAACAAGAACTCCCTGGATTTCAGACACCAGAACATGAGGTCCGTGTTGGTAATCCTGTTTGAAGTTTCATGTTCTAAATTCGATCGTAACCATGTTTTAACGAAGTTTCATGTGTCTTGTTTGAAGCAGCATGCACGTCCTTGTCGCGTAAGGAAGACATGGGTACAAAGGATATGCATAAGGAGAGTATGGAAACTGGTAGCGGAGAATGCACGGACATAGCCCCTGGCTTACATGCGCGTTGCAAGGCTGCCCCTCTCAAGGAGACTACTTTCATAGCACACCGATGGACCATATTATGA

mRNA sequence

ATGTCCAGTATGCGTCTGAAGAGGGTTGAGAAACGTTTGAAGCACATGGACAAGCGCATGGACGATAGGATGGGAGGTATTGAGGCTGAATTAAAATCCATCCGAAAATTCTTGCGAAGAATCGCTAAGGGTTTACCTATCGACCCGAATGACATGAGAAGAGATAGTAGCGGAGATCGTACTGCGCCAGGAGATGGACCTAGTGATGCACCCAATGATGGACCCAGTGGCGCTGATGGTGGTCAGGGTGATGGTCCTGATGCTATGGATGGGGAAGCCACAGATGACATGATCATCGATCTCTCGGATGTGAATGTGCACAAGACAGAAGCACTTCATTCTGGTCATGATAGGGACCAGGCTCAACAAGAACTCCCTGGATTTCAGACACCAGAACATGAGGTCCGTGTTGCATGCACGTCCTTGTCGCGTAAGGAAGACATGGGTACAAAGGATATGCATAAGGAGAGTATGGAAACTGGTAGCGGAGAATGCACGGACATAGCCCCTGGCTTACATGCGCGTTGCAAGGCTGCCCCTCTCAAGGAGACTACTTTCATAGCACACCGATGGACCATATTATGA

Coding sequence (CDS)

ATGTCCAGTATGCGTCTGAAGAGGGTTGAGAAACGTTTGAAGCACATGGACAAGCGCATGGACGATAGGATGGGAGGTATTGAGGCTGAATTAAAATCCATCCGAAAATTCTTGCGAAGAATCGCTAAGGGTTTACCTATCGACCCGAATGACATGAGAAGAGATAGTAGCGGAGATCGTACTGCGCCAGGAGATGGACCTAGTGATGCACCCAATGATGGACCCAGTGGCGCTGATGGTGGTCAGGGTGATGGTCCTGATGCTATGGATGGGGAAGCCACAGATGACATGATCATCGATCTCTCGGATGTGAATGTGCACAAGACAGAAGCACTTCATTCTGGTCATGATAGGGACCAGGCTCAACAAGAACTCCCTGGATTTCAGACACCAGAACATGAGGTCCGTGTTGCATGCACGTCCTTGTCGCGTAAGGAAGACATGGGTACAAAGGATATGCATAAGGAGAGTATGGAAACTGGTAGCGGAGAATGCACGGACATAGCCCCTGGCTTACATGCGCGTTGCAAGGCTGCCCCTCTCAAGGAGACTACTTTCATAGCACACCGATGGACCATATTATGA

Protein sequence

MSSMRLKRVEKRLKHMDKRMDDRMGGIEAELKSIRKFLRRIAKGLPIDPNDMRRDSSGDRTAPGDGPSDAPNDGPSGADGGQGDGPDAMDGEATDDMIIDLSDVNVHKTEALHSGHDRDQAQQELPGFQTPEHEVRVACTSLSRKEDMGTKDMHKESMETGSGECTDIAPGLHARCKAAPLKETTFIAHRWTIL

Homology

[Close]

BLAST of MC07g_new0128 vs. NCBI nr
Match: XP_022150329.1 (uncharacterized protein LOC111018527 [Momordica charantia] >XP_022150330.1 uncharacterized protein LOC111018527 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 1.03e-05
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 20 MDDRMGGIEAELKSIRKFLRRIAKGLPIDPNDMRRDSSGDRTAPGDGPSDAPND 73
          M+DR   +E +LK+IRKFLRR+ KGLP+D + +R++++GDR   G+G +D   D
Sbjct: 41 MNDRFNDMEGDLKTIRKFLRRLVKGLPVDTSKLRKNTNGDRDGNGNGYADGAGD 94

[Close]

BLAST of MC07g_new0128 vs. NCBI nr
Match: XP_022154561.1 (uncharacterized protein LOC111021802 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 3.10e-05
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 2   SSMRLKRVEKRLKHMDKRMDDRMGGIEAELKSIRKFL 38
           S+ RLKRVEK LK MDKRMD+RMG IEAELKSI+KFL
Sbjct: 317 STGRLKRVEKCLKSMDKRMDERMGDIEAELKSIKKFL 353

[Close]

BLAST of MC07g_new0128 vs. ExPASy TrEMBL
Match: A0A6J1D868 (uncharacterized protein LOC111018527 OS=Momordica charantia OX=3673 GN=LOC111018527 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.00e-06
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 20 MDDRMGGIEAELKSIRKFLRRIAKGLPIDPNDMRRDSSGDRTAPGDGPSDAPND 73
          M+DR   +E +LK+IRKFLRR+ KGLP+D + +R++++GDR   G+G +D   D
Sbjct: 41 MNDRFNDMEGDLKTIRKFLRRLVKGLPVDTSKLRKNTNGDRDGNGNGYADGAGD 94

[Close]

BLAST of MC07g_new0128 vs. ExPASy TrEMBL
Match: A0A6J1DP34 (uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021802 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.50e-05
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 2   SSMRLKRVEKRLKHMDKRMDDRMGGIEAELKSIRKFL 38
           S+ RLKRVEK LK MDKRMD+RMG IEAELKSI+KFL
Sbjct: 317 STGRLKRVEKCLKSMDKRMDERMGDIEAELKSIKKFL 353

The following BLAST results are available for this feature:

BLAST of MC07g_new0128 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0128 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150329.1	1.03e-05	48.15	uncharacterized protein LOC111018527 [Momordica charantia] >XP_022150330.1 uncha...	[more]
XP_022154561.1	3.10e-05	81.08	uncharacterized protein LOC111021802 [Momordica charantia]	[more]

BLAST of MC07g_new0128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D868	5.00e-06	48.15	uncharacterized protein LOC111018527 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DP34	1.50e-05	81.08	uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of MC07g_new0128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0128.1	MC07g_new0128.1	mRNA