MC07g_new0091 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0091
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Location	MC07: 3249489 .. 3250537 (-)
RNA-Seq Expression	MC07g_new0091
Synteny	MC07g_new0091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGAAATCCACAAGATCCTCGACCTCCACAAGATCCACCTGTGAATGGAGATATGGCAGGTGAAGAAGTAGCCAACCGAGCAACAGGAGAAGTTCCTAATCTGATCTTTCTAGCAGATAACCGAGATGTAGCCATGCGGAACTATGTCACTCGTGCGTTCCACAACTTAAATTCAAGGATAAGTAATCCTTTACCTCAAGCCGCACAATTCGAGCTTAGCCAGTCATCTTCCAGATGTTGCAGACGATGGGCCAGTTCGGAGGATTGACTAATGAAGATCCTTACTCCCATCTCAAATCTTTTATTGAAATAGCTAATGCATTTCAACTTCCTAGTGTCTCTGAAGATGCACTAAGACTAAAAATGTTTCATTTTTCTCTCAGGGACAGTGAAAGAACTTGGCTAAACTCACTATAACCAAATTCTATCACCACGTGGGTAGAATTGATGGAGAAATTTTTGGCAAAGTACCATATGTTGACTAGGAATGCAGATCTTCGAGAAGACATTGTGTCTTTTCGACAAAAAGAGAACGAAACAGTCCAAGAAGCTTGGAGTGTTTCAAAGAGTTACTTAGAAGATGCCCGAGCCATGGATTGCCCGCATGTGTGCAGATTGAACAGTTCTAAAGGGGATTGGATCGTTCATCGAGAATCATGTTGAACACTGTAGCTAATGGCTTATTGTTAGAAAAGTCGGTTAATGAGATCGTTGATATTTTGAACAAGATGACAGACATTAATGAGCAAGGAGAAGTAGAAAGGCTATTGCCAAAGAAGCAAGCATCAGTCGGAATCTTTGAGTTAGACACAGTAGCCTCAATGCAAGCCCAAATGGCGGCTATGAACTAGATGTTAAAGCAACTGACAATGGAAAAGGAAACCAAAACCGCCACTTCAGCGGCGATTCTTGAACCCTCTCCTGTTTTACAAATTTCAAATATATCTTGTGTTTATTATGGTGATAACCACTTATATTTGTCCAGCTAATCCAGCGTCTGTTTTCTATGTAGGTCAAGGTGCCCAGTGGAATTTCAATCTCTAA

mRNA sequence

ATGAATAGAAATCCACAAGATCCTCGACCTCCACAAGATCCACCTGTGAATGGAGATATGGCAGGTGAAGAAGTAGCCAACCGAGCAACAGGAGAAGTTCCTAATCTGATCTTTCTAGCAGATAACCGAGATGTAGCCATGCGGAACTATGTCACTCGTGCGTTCCACAACTTAAATTCAAGGATAACTAATCCAGCGTCTGTTTTCTATGTAGGTCAAGGTGCCCAGTGGAATTTCAATCTCTAA

Coding sequence (CDS)

ATGAATAGAAATCCACAAGATCCTCGACCTCCACAAGATCCACCTGTGAATGGAGATATGGCAGGTGAAGAAGTAGCCAACCGAGCAACAGGAGAAGTTCCTAATCTGATCTTTCTAGCAGATAACCGAGATGTAGCCATGCGGAACTATGTCACTCGTGCGTTCCACAACTTAAATTCAAGGATAACTAATCCAGCGTCTGTTTTCTATGTAGGTCAAGGTGCCCAGTGGAATTTCAATCTCTAA

Protein sequence

MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNSRITNPASVFYVGQGAQWNFNL

Homology

[Close]

BLAST of MC07g_new0091 vs. NCBI nr
Match: XP_022158836.1 (uncharacterized protein LOC111025302 [Momordica charantia])

HSP 1 Score: 109 bits (272), Expect = 2.60e-26
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNS 60
          MNRN QDP PPQ+PPVNGDMAGEE ANR  GE+PNLI LADNRDVAMRNYVT AFHNLNS
Sbjct: 1  MNRNAQDPPPPQNPPVNGDMAGEEAANRV-GEIPNLILLADNRDVAMRNYVTHAFHNLNS 60

Query: 61 RITNP 65
           I NP
Sbjct: 61 GINNP 64

[Close]

BLAST of MC07g_new0091 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 104 bits (260), Expect = 6.69e-24
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNS 60
          MNRN QDP PPQ+PPVNGDMAGE  ANRA GE+PN I LADNRDVAMRNYVTRAFHNLNS
Sbjct: 1  MNRNAQDPPPPQNPPVNGDMAGEGAANRA-GEIPNRILLADNRDVAMRNYVTRAFHNLNS 60

Query: 61 RITN 64
           I N
Sbjct: 61 GINN 63

[Close]

BLAST of MC07g_new0091 vs. NCBI nr
Match: XP_022158314.1 (uncharacterized protein LOC111024824 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 2.17e-18
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNS 60
          MN NPQDP  P +PPV+GD AGE  ANRA GEVPN I L DNRDVA+RNYVT AFHNLNS
Sbjct: 1  MNINPQDPPHPPNPPVDGDRAGEGAANRA-GEVPNPILLTDNRDVAVRNYVTHAFHNLNS 60

Query: 61 RITNPASV 68
           + +   V
Sbjct: 61 DVVDDGPV 67

[Close]

BLAST of MC07g_new0091 vs. NCBI nr
Match: XP_022150327.1 (uncharacterized protein LOC111018524 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 9.39e-08
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 8  PRPPQDPP-VNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNSRITNP 65
          P+ P DPP VNG+MAG++  N       N I +ADNRDVAMR Y   AF NL+S I NP
Sbjct: 6  PQNPADPPIVNGNMAGQQQNNEF-----NHILMADNRDVAMREYAATAFQNLDSVILNP 59

[Close]

BLAST of MC07g_new0091 vs. NCBI nr
Match: XP_022158408.1 (uncharacterized protein LOC111024897, partial [Momordica charantia])

HSP 1 Score: 50.8 bits (120), Expect = 5.88e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 8   PRPPQDPP-VNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNSRITNP 65
           PR P DPP VNG+M      + A  +  N I +ADNRDVAMR Y   AF N +S I NP
Sbjct: 59  PRDPVDPPAVNGNMR-----DHARNDEFNYIQMADNRDVAMREYAATAFQNFDSGIVNP 112

[Close]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL
Match: A0A6J1E251 (uncharacterized protein LOC111025302 OS=Momordica charantia OX=3673 GN=LOC111025302 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.26e-26
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNS 60
          MNRN QDP PPQ+PPVNGDMAGEE ANR  GE+PNLI LADNRDVAMRNYVT AFHNLNS
Sbjct: 1  MNRNAQDPPPPQNPPVNGDMAGEEAANRV-GEIPNLILLADNRDVAMRNYVTHAFHNLNS 60

Query: 61 RITNP 65
           I NP
Sbjct: 61 GINNP 64

[Close]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 3.24e-24
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNS 60
          MNRN QDP PPQ+PPVNGDMAGE  ANRA GE+PN I LADNRDVAMRNYVTRAFHNLNS
Sbjct: 1  MNRNAQDPPPPQNPPVNGDMAGEGAANRA-GEIPNRILLADNRDVAMRNYVTRAFHNLNS 60

Query: 61 RITN 64
           I N
Sbjct: 61 GINN 63

[Close]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL
Match: A0A6J1DZ19 (uncharacterized protein LOC111024824 OS=Momordica charantia OX=3673 GN=LOC111024824 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.05e-18
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MNRNPQDPRPPQDPPVNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNS 60
          MN NPQDP  P +PPV+GD AGE  ANRA GEVPN I L DNRDVA+RNYVT AFHNLNS
Sbjct: 1  MNINPQDPPHPPNPPVDGDRAGEGAANRA-GEVPNPILLTDNRDVAVRNYVTHAFHNLNS 60

Query: 61 RITNPASV 68
           + +   V
Sbjct: 61 DVVDDGPV 67

[Close]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL
Match: A0A6J1DAG1 (uncharacterized protein LOC111018524 OS=Momordica charantia OX=3673 GN=LOC111018524 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.55e-08
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 8  PRPPQDPP-VNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNSRITNP 65
          P+ P DPP VNG+MAG++  N       N I +ADNRDVAMR Y   AF NL+S I NP
Sbjct: 6  PQNPADPPIVNGNMAGQQQNNEF-----NHILMADNRDVAMREYAATAFQNLDSVILNP 59

[Close]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.85e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 8   PRPPQDPP-VNGDMAGEEVANRATGEVPNLIFLADNRDVAMRNYVTRAFHNLNSRITNP 65
           PR P DPP VNG+M      + A  +  N I +ADNRDVAMR Y   AF N +S I NP
Sbjct: 59  PRDPVDPPAVNGNMR-----DHARNDEFNYIQMADNRDVAMREYAATAFQNFDSGIVNP 112

The following BLAST results are available for this feature:

BLAST of MC07g_new0091 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0091 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158836.1	2.60e-26	83.08	uncharacterized protein LOC111025302 [Momordica charantia]	[more]
XP_022154847.1	6.69e-24	82.81	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]
XP_022158314.1	2.17e-18	67.65	uncharacterized protein LOC111024824 [Momordica charantia]	[more]
XP_022150327.1	9.39e-08	54.24	uncharacterized protein LOC111018524 [Momordica charantia]	[more]
XP_022158408.1	5.88e-05	50.85	uncharacterized protein LOC111024897, partial [Momordica charantia]	[more]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E251	1.26e-26	83.08	uncharacterized protein LOC111025302 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DMT3	3.24e-24	82.81	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia...	[more]
A0A6J1DZ19	1.05e-18	67.65	uncharacterized protein LOC111024824 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DAG1	4.55e-08	54.24	uncharacterized protein LOC111018524 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DW02	2.85e-05	50.85	uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of MC07g_new0091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0091.1	MC07g_new0091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding