MC07g_new0060 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0060
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal L18p/L5e family protein
Location	MC07: 2096337 .. 2096717 (-)
RNA-Seq Expression	MC07g_new0060
Synteny	MC07g_new0060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGAAGCCGGAGGCACCTCCTCCAAGTGGTTGTTTCCTGCCGGAAAATCAGCGCTCAGGTCACAAATCCGGCGAGCTCCTCCATCGTCGCCATGGCCTCATCCTCGGAGCAGGAATTCGTGGCCTACAACCGATCGAAACTCAACCGCTTCCCCCGATCCAACAACTTCTGGGACTCCATGATCGCCTCCCGCGTCGGCGAAAAGCTAGGGCTCCGCCTGACCGAGATCGGCGTCTCCGATGTTCAGATCGACCTCCGGGAAGAGCTCTCGCGCCCTGCTTACTACAGGAAGATGGTGCTGCCGCTGTTCGATTCCGTGCGCCGCTCCGGCGTCGCCATTGACGGAGCTGAGAACCTTGGAACAGGTGCGATCTAA

mRNA sequence

ATGTCGAGAAGCCGGAGGCACCTCCTCCAAGTGGTTGTTTCCTGCCGGAAAATCAGCGCTCAGGTCACAAATCCGGCGAGCTCCTCCATCGTCGCCATGGCCTCATCCTCGGAGCAGGAATTCGTGGCCTACAACCGATCGAAACTCAACCGCTTCCCCCGATCCAACAACTTCTGGGACTCCATGATCGCCTCCCGCGTCGGCGAAAAGCTAGGGCTCCGCCTGACCGAGATCGGCGTCTCCGATGTTCAGATCGACCTCCGGGAAGAGCTCTCGCGCCCTGCTTACTACAGGAAGATGGTGCTGCCGCTGTTCGATTCCGTGCGCCGCTCCGGCGTCGCCATTGACGGAGCTGAGAACCTTGGAACAGGTGCGATCTAA

Coding sequence (CDS)

ATGTCGAGAAGCCGGAGGCACCTCCTCCAAGTGGTTGTTTCCTGCCGGAAAATCAGCGCTCAGGTCACAAATCCGGCGAGCTCCTCCATCGTCGCCATGGCCTCATCCTCGGAGCAGGAATTCGTGGCCTACAACCGATCGAAACTCAACCGCTTCCCCCGATCCAACAACTTCTGGGACTCCATGATCGCCTCCCGCGTCGGCGAAAAGCTAGGGCTCCGCCTGACCGAGATCGGCGTCTCCGATGTTCAGATCGACCTCCGGGAAGAGCTCTCGCGCCCTGCTTACTACAGGAAGATGGTGCTGCCGCTGTTCGATTCCGTGCGCCGCTCCGGCGTCGCCATTGACGGAGCTGAGAACCTTGGAACAGGTGCGATCTAA

Protein sequence

MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAENLGTGAI

Homology

[Close]

BLAST of MC07g_new0060 vs. NCBI nr
Match: XP_022150463.1 (uncharacterized protein LOC111018600 [Momordica charantia])

HSP 1 Score: 237 bits (604), Expect = 2.53e-78
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD
Sbjct: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN
Sbjct: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120

Query: 121 LGTGAI 126
           LGTG +
Sbjct: 121 LGTGFV 126

[Close]

BLAST of MC07g_new0060 vs. NCBI nr
Match: XP_004140885.1 (uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 201 bits (512), Expect = 2.36e-64
Identity = 103/126 (81.75%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVGEKLG RL EIGVSDV+IDL EELSRP YYRKMVLPLFDSV+RSGVA+DGAE 
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 126
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of MC07g_new0060 vs. NCBI nr
Match: XP_038884099.1 (uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida])

HSP 1 Score: 199 bits (507), Expect = 1.50e-63
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS S+ HLL++V+SCRKI+AQVTNPA+SSIVAMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVGEKLG RL EIGVSDV+IDL EE SRP YYRKMVLPLFDSV+RSGVA+DGAE 
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 124
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of MC07g_new0060 vs. NCBI nr
Match: XP_038884098.1 (uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida])

HSP 1 Score: 199 bits (507), Expect = 1.55e-63
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS S+ HLL++V+SCRKI+AQVTNPA+SSIVAMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVGEKLG RL EIGVSDV+IDL EE SRP YYRKMVLPLFDSV+RSGVA+DGAE 
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 124
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of MC07g_new0060 vs. NCBI nr
Match: XP_038884096.1 (uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida])

HSP 1 Score: 199 bits (507), Expect = 1.77e-63
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS S+ HLL++V+SCRKI+AQVTNPA+SSIVAMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVGEKLG RL EIGVSDV+IDL EE SRP YYRKMVLPLFDSV+RSGVA+DGAE 
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 124
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of MC07g_new0060 vs. ExPASy TrEMBL
Match: A0A6J1D9I9 (uncharacterized protein LOC111018600 OS=Momordica charantia OX=3673 GN=LOC111018600 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 1.22e-78
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD
Sbjct: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN
Sbjct: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120

Query: 121 LGTGAI 126
           LGTG +
Sbjct: 121 LGTGFV 126

[Close]

BLAST of MC07g_new0060 vs. ExPASy TrEMBL
Match: A0A0A0KE39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.14e-64
Identity = 103/126 (81.75%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVGEKLG RL EIGVSDV+IDL EELSRP YYRKMVLPLFDSV+RSGVA+DGAE 
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 126
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of MC07g_new0060 vs. ExPASy TrEMBL
Match: A0A5D3BWW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00630 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 8.99e-62
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVG KLG RL EIGVSDV+IDL EELSRP YYRKMVLPLFDSV+RSG+A+DG E 
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 126
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of MC07g_new0060 vs. ExPASy TrEMBL
Match: A0A1S4DVU4 (uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 8.99e-62
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S +ASRVG KLG RL EIGVSDV+IDL EELSRP YYRKMVLPLFDSV+RSG+A+DG E 
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 126
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of MC07g_new0060 vs. ExPASy TrEMBL
Match: A0A6J1EVG7 (uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC111436340 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 1.81e-61
Identity = 100/126 (79.37%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MSRSRRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWD 60
           MS ++ HLL++V+SCRKI+AQVTNP +S+I+AMASSSEQEFVAYNRSKL+RFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60

Query: 61  SMIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAEN 120
           S IASRVGEKLG RL EIGVSDV+IDL EELSRP  YR  VLPLFDSVRRSGVA++GAE 
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 126
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of MC07g_new0060 vs. TAIR 10
Match: AT2G43310.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-40
Identity = 81/117 (69.23%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 5   RRHLLQVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSMIA 64
           R HLLQ+V+SCRKI+AQVT P SS+I+AMASSSEQEF+A +R+ L RFP SN+FWDS  A
Sbjct: 6   RHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKTA 65

Query: 65  SRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRRSGVAIDGAENL 122
           SRVGEKLGLRL E+GV  V ID  EE+SRP ++RK VLPLFDSVRR+G+ +DG E L
Sbjct: 66  SRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122

The following BLAST results are available for this feature:

BLAST of MC07g_new0060 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150463.1	2.53e-78	98.41	uncharacterized protein LOC111018600 [Momordica charantia]	[more]
XP_004140885.1	2.36e-64	81.75	uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
XP_038884099.1	1.50e-63	83.06	uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]	[more]
XP_038884098.1	1.55e-63	83.06	uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]	[more]
XP_038884096.1	1.77e-63	83.06	uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]	[more]

BLAST of MC07g_new0060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9I9	1.22e-78	98.41	uncharacterized protein LOC111018600 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0KE39	1.14e-64	81.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1	[more]
A0A5D3BWW4	8.99e-62	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DVU4	8.99e-62	78.57	uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=...	[more]
A0A6J1EVG7	1.81e-61	79.37	uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]

BLAST of MC07g_new0060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43310.1	1.6e-40	69.23	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 1..114 e-value: 3.4E-9 score: 39.1
None	No IPR available	PANTHER	PTHR12899:SF14	F14B2.25/F14B2.25	coord: 3..123
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 3..112
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 3..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0060.1	MC07g_new0060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome