MC07g_new0003 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC07g_new0003
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibonuclease H
LocationMC07: 96968 .. 97880 (+)
RNA-Seq ExpressionMC07g_new0003
SyntenyMC07g_new0003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACAAAGCACTAGTAGTAGGCCTACGAATGGCCGAAGCCATGGGAGCCACGCACTTGGATATAAGGAGCTACTCACAACTCGTAGTTAATCAGATCACCAAAGAGTACCAGGCCAAAGATAGTCGGATGGAGAGATACCTACACAAGGTGCGCGAGCTATTGTCTCGATTCCTAAGGCATACCATAGAGCGGGTATCGCGTGCAGAGAATGCTAACGCGGATGCCTTGGCAAAACTGACGTCTTCTTACCCGACCGAGCTATATAGGTCGATCCCAGTCGAGATTTTGGAAGCCCCCTCCATTCAAGAGCCAGAGGCAATGATTGTCGAAGCAGCGATACCGACTTGGATGGATTACATAAAAGCCTTCCTACGAGGAGAGGAACTCCCAGAACAAGTCGATCTCAAGAAAATGCGATGCAAGGCGACATGGTACGTTCTACGAGGTGATGTGTTGTACAAGAGGGGATTTTCCCTTCTGCTGCTGAGGTACGTAGACCCAGAGGAGGCGAACTACGTCTTGAGAGAAGTGCACGAAGGAGTTTGCGGCAAGCTGGTCAAGTAGGGTTATTACTAGCCCACTAAGGGACGAAATGCCATGAAGTTCACGCGGTGATGCGATCGATGCCAATGGTTTGCTACGACAATTGACCAGCCCCCCGAGCTCCTCACGCCAATCTCAGCTCCCTGACCATTCGCTTAGTGGAGGATTGACCTCATCGGACCTCTCCCACTAGGAAAAGGCCAAACAAAGTTCGCAATAGTGGCTATAGATTACTTCACCAAGTGAGCGGAGGCTGAGCCGTTAGCCACCATAACAGAGGCCAAAATCACAAACTTCGTGTGGACTAGTCTTATTTGTAGGTTTGGCATACCTCATGCCATCACCGACAATGGGAAACAGTTCGACAAC

mRNA sequence

ATGGCCGAAGCCATGGGAGCCACGCACTTGGATATAAGGAGCTACTCACAACTCGTAGTTAATCAGATCACCAAAGAGTACCAGGCCAAAGATAGTCGGATGGAGAGATACCTACACAAGGTGCGCGAGCTATTGTCTCGATTCCTAAGGCATACCATAGAGCGGGTATCGCGTGCAGAGAATGCTAACGCGGATGCCTTGGCAAAACTGACGTCTTCTTACCCGACCGAGCTATATAGGTCGATCCCAGTCGAGATTTTGGAAGCCCCCTCCATTCAAGAGCCAGAGGCAATGATTGTCGAAGCAGCGATACCGACTTGGATGGATTACATAAAAGCCTTCCTACGAGGAGAGGAACTCCCAGAACAAGTCGATCTCAAGAAAATGCGATGCAAGGCGACATGGTACGTTCTACGAGGTGATGTGTTGTACAAGAGGGGATTTTCCCTTCTGCTGCTGAGGTACGTAGACCCAGAGGAGGCGAACTACGTCTTGAGAGAAGTGCACGAAGGAGTTTGCGGCAAGCTGGTCAAGTAG

Coding sequence (CDS)

ATGGCCGAAGCCATGGGAGCCACGCACTTGGATATAAGGAGCTACTCACAACTCGTAGTTAATCAGATCACCAAAGAGTACCAGGCCAAAGATAGTCGGATGGAGAGATACCTACACAAGGTGCGCGAGCTATTGTCTCGATTCCTAAGGCATACCATAGAGCGGGTATCGCGTGCAGAGAATGCTAACGCGGATGCCTTGGCAAAACTGACGTCTTCTTACCCGACCGAGCTATATAGGTCGATCCCAGTCGAGATTTTGGAAGCCCCCTCCATTCAAGAGCCAGAGGCAATGATTGTCGAAGCAGCGATACCGACTTGGATGGATTACATAAAAGCCTTCCTACGAGGAGAGGAACTCCCAGAACAAGTCGATCTCAAGAAAATGCGATGCAAGGCGACATGGTACGTTCTACGAGGTGATGTGTTGTACAAGAGGGGATTTTCCCTTCTGCTGCTGAGGTACGTAGACCCAGAGGAGGCGAACTACGTCTTGAGAGAAGTGCACGAAGGAGTTTGCGGCAAGCTGGTCAAGTAG

Protein sequence

MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAENANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEELPEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCGKLVK
Homology
BLAST of MC07g_new0003 vs. NCBI nr
Match: XP_022157610.1 (uncharacterized protein LOC111024267 [Momordica charantia])

HSP 1 Score: 194 bits (492), Expect = 5.37e-57
Identity = 96/174 (55.17%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A+ +GATH+ + + SQLVVNQI +EY+AKDSRME+YL KVR  L++F  + + +V R E
Sbjct: 108 VAKGLGATHIKVFNDSQLVVNQIKEEYKAKDSRMEKYLSKVRSHLAQFKTYEVNQVPRLE 167

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+N DALAKL S+Y T+L RSIPVEIL+ PSI EP+ M V+A  P WMD +  F++G   
Sbjct: 168 NSNVDALAKLASAYETDLARSIPVEILDNPSILEPDIMDVDATAPMWMDPVVEFIKGNPP 227

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            +  + KKM  +A  +VLR   LY RGFSL LL+   PEE NY+LRE+HEGVCG
Sbjct: 228 QDSKEHKKMARRAAQFVLRDGALYSRGFSLPLLKCATPEEGNYILREIHEGVCG 281

BLAST of MC07g_new0003 vs. NCBI nr
Match: XP_022158860.1 (uncharacterized protein LOC111025322 [Momordica charantia])

HSP 1 Score: 186 bits (472), Expect = 4.42e-54
Identity = 95/174 (54.60%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A A+GA+H+ + S SQLVV+QI +EYQAKDSRME+YL KVR  L +F  + + +V RAE
Sbjct: 153 IARALGASHIKVFSDSQLVVSQIKEEYQAKDSRMEKYLSKVRSYLIQFRTYEVSQVPRAE 212

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NA+ALAKL  +Y T+L RS+PVEIL+ PSI EP+ M V+   P+WMD I  F++G   
Sbjct: 213 NSNANALAKLALAYETDLARSVPVEILDGPSILEPDLMEVDTPEPSWMDPIVDFIKGNSP 272

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
           P+  + KKM  KA  +V++   LY+R FSL LL+ V  EE  YVLRE+HEGVCG
Sbjct: 273 PDPKEHKKMARKAARFVIQDGALYRRSFSLPLLKCVTLEEGLYVLREIHEGVCG 326

BLAST of MC07g_new0003 vs. NCBI nr
Match: XP_022150100.1 (uncharacterized protein LOC111018362 [Momordica charantia])

HSP 1 Score: 192 bits (488), Expect = 5.31e-54
Identity = 95/174 (54.60%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A  +GA H+ + S SQLVVNQI +EYQ KD RME+YL KVR  L++F  + + +V R+E
Sbjct: 344 VARGLGAVHIKVFSDSQLVVNQIKEEYQTKDPRMEKYLSKVRSHLAQFRTYEVSQVPRSE 403

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NADALAKL S+Y T+L RS+PVEIL++PSI EP+ M V+   P+WMD I  F++G  L
Sbjct: 404 NSNADALAKLASAYETDLARSVPVEILDSPSILEPDVMEVDTPSPSWMDPIVEFIKGNPL 463

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            +  + KKM  +A  + LR   LY+RGFSL LL+ V PEE  Y+LRE+HEGVCG
Sbjct: 464 QDPKEQKKMARRAARFTLREGALYRRGFSLPLLKCVTPEEGLYILREIHEGVCG 517

BLAST of MC07g_new0003 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 189 bits (481), Expect = 9.89e-54
Identity = 97/174 (55.75%), Postives = 128/174 (73.56%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A A+GA+ + + S SQLVV+QI +EYQAKDSRME+YL KVR  L++F  + + RV RAE
Sbjct: 195 IARALGASCVKVFSDSQLVVSQIKEEYQAKDSRMEKYLGKVRSHLAQFRTYEVSRVPRAE 254

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NADALAKL S+Y T L RS+PVEIL+ PSI EP+ M + A   +WMD I  F+RG   
Sbjct: 255 NSNADALAKLASAYETNLARSVPVEILDNPSISEPDLMEIGAPESSWMDPIADFIRGNSP 314

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            +  + +K+  +A  +V+RG+ LY+RGFSL LLR + PEE  YVLRE+HEGVCG
Sbjct: 315 QDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCG 368

BLAST of MC07g_new0003 vs. NCBI nr
Match: XP_022151715.1 (uncharacterized protein LOC111019628 [Momordica charantia])

HSP 1 Score: 184 bits (467), Expect = 1.47e-53
Identity = 93/174 (53.45%), Postives = 124/174 (71.26%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A+ +GA H+ + S SQLV NQI +EYQ KD RME+YL +VR  L++F  + + +V R+E
Sbjct: 153 VAKGLGAIHIKVFSDSQLVGNQIKEEYQTKDPRMEKYLSRVRSHLAQFETYEVSQVPRSE 212

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NADALAKL S+Y T+L RS+PVEIL+ PSI +P+ M ++   P+WMD I  F++G   
Sbjct: 213 NSNADALAKLASAYETDLARSVPVEILDNPSILDPDVMEIDIPSPSWMDPIVEFIQGNPP 272

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            E  + KKM  KA  +VLR   LY+RGFSL LL+ V PEE  Y+LRE HEGVCG
Sbjct: 273 QELKEQKKMARKAARFVLRDGALYRRGFSLPLLKCVTPEEGLYILREFHEGVCG 326

BLAST of MC07g_new0003 vs. ExPASy TrEMBL
Match: A0A6J1DTK4 (uncharacterized protein LOC111024267 OS=Momordica charantia OX=3673 GN=LOC111024267 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 2.60e-57
Identity = 96/174 (55.17%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A+ +GATH+ + + SQLVVNQI +EY+AKDSRME+YL KVR  L++F  + + +V R E
Sbjct: 108 VAKGLGATHIKVFNDSQLVVNQIKEEYKAKDSRMEKYLSKVRSHLAQFKTYEVNQVPRLE 167

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+N DALAKL S+Y T+L RSIPVEIL+ PSI EP+ M V+A  P WMD +  F++G   
Sbjct: 168 NSNVDALAKLASAYETDLARSIPVEILDNPSILEPDIMDVDATAPMWMDPVVEFIKGNPP 227

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            +  + KKM  +A  +VLR   LY RGFSL LL+   PEE NY+LRE+HEGVCG
Sbjct: 228 QDSKEHKKMARRAAQFVLRDGALYSRGFSLPLLKCATPEEGNYILREIHEGVCG 281

BLAST of MC07g_new0003 vs. ExPASy TrEMBL
Match: A0A6J1DX12 (uncharacterized protein LOC111025322 OS=Momordica charantia OX=3673 GN=LOC111025322 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 2.14e-54
Identity = 95/174 (54.60%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A A+GA+H+ + S SQLVV+QI +EYQAKDSRME+YL KVR  L +F  + + +V RAE
Sbjct: 153 IARALGASHIKVFSDSQLVVSQIKEEYQAKDSRMEKYLSKVRSYLIQFRTYEVSQVPRAE 212

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NA+ALAKL  +Y T+L RS+PVEIL+ PSI EP+ M V+   P+WMD I  F++G   
Sbjct: 213 NSNANALAKLALAYETDLARSVPVEILDGPSILEPDLMEVDTPEPSWMDPIVDFIKGNSP 272

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
           P+  + KKM  KA  +V++   LY+R FSL LL+ V  EE  YVLRE+HEGVCG
Sbjct: 273 PDPKEHKKMARKAARFVIQDGALYRRSFSLPLLKCVTLEEGLYVLREIHEGVCG 326

BLAST of MC07g_new0003 vs. ExPASy TrEMBL
Match: A0A6J1D7J6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1)

HSP 1 Score: 192 bits (488), Expect = 2.57e-54
Identity = 95/174 (54.60%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A  +GA H+ + S SQLVVNQI +EYQ KD RME+YL KVR  L++F  + + +V R+E
Sbjct: 344 VARGLGAVHIKVFSDSQLVVNQIKEEYQTKDPRMEKYLSKVRSHLAQFRTYEVSQVPRSE 403

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NADALAKL S+Y T+L RS+PVEIL++PSI EP+ M V+   P+WMD I  F++G  L
Sbjct: 404 NSNADALAKLASAYETDLARSVPVEILDSPSILEPDVMEVDTPSPSWMDPIVEFIKGNPL 463

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            +  + KKM  +A  + LR   LY+RGFSL LL+ V PEE  Y+LRE+HEGVCG
Sbjct: 464 QDPKEQKKMARRAARFTLREGALYRRGFSLPLLKCVTPEEGLYILREIHEGVCG 517

BLAST of MC07g_new0003 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 4.79e-54
Identity = 97/174 (55.75%), Postives = 128/174 (73.56%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A A+GA+ + + S SQLVV+QI +EYQAKDSRME+YL KVR  L++F  + + RV RAE
Sbjct: 195 IARALGASCVKVFSDSQLVVSQIKEEYQAKDSRMEKYLGKVRSHLAQFRTYEVSRVPRAE 254

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NADALAKL S+Y T L RS+PVEIL+ PSI EP+ M + A   +WMD I  F+RG   
Sbjct: 255 NSNADALAKLASAYETNLARSVPVEILDNPSISEPDLMEIGAPESSWMDPIADFIRGNSP 314

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            +  + +K+  +A  +V+RG+ LY+RGFSL LLR + PEE  YVLRE+HEGVCG
Sbjct: 315 QDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCG 368

BLAST of MC07g_new0003 vs. ExPASy TrEMBL
Match: A0A6J1DBZ0 (uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019628 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 7.10e-54
Identity = 93/174 (53.45%), Postives = 124/174 (71.26%), Query Frame = 0

Query: 1   MAEAMGATHLDIRSYSQLVVNQITKEYQAKDSRMERYLHKVRELLSRFLRHTIERVSRAE 60
           +A+ +GA H+ + S SQLV NQI +EYQ KD RME+YL +VR  L++F  + + +V R+E
Sbjct: 153 VAKGLGAIHIKVFSDSQLVGNQIKEEYQTKDPRMEKYLSRVRSHLAQFETYEVSQVPRSE 212

Query: 61  NANADALAKLTSSYPTELYRSIPVEILEAPSIQEPEAMIVEAAIPTWMDYIKAFLRGEEL 120
           N+NADALAKL S+Y T+L RS+PVEIL+ PSI +P+ M ++   P+WMD I  F++G   
Sbjct: 213 NSNADALAKLASAYETDLARSVPVEILDNPSILDPDVMEIDIPSPSWMDPIVEFIQGNPP 272

Query: 121 PEQVDLKKMRCKATWYVLRGDVLYKRGFSLLLLRYVDPEEANYVLREVHEGVCG 174
            E  + KKM  KA  +VLR   LY+RGFSL LL+ V PEE  Y+LRE HEGVCG
Sbjct: 273 QELKEQKKMARKAARFVLRDGALYRRGFSLPLLKCVTPEEGLYILREFHEGVCG 326

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022157610.15.37e-5755.17uncharacterized protein LOC111024267 [Momordica charantia][more]
XP_022158860.14.42e-5454.60uncharacterized protein LOC111025322 [Momordica charantia][more]
XP_022150100.15.31e-5454.60uncharacterized protein LOC111018362 [Momordica charantia][more]
XP_022136647.19.89e-5455.75uncharacterized protein LOC111008302 [Momordica charantia][more]
XP_022151715.11.47e-5353.45uncharacterized protein LOC111019628 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DTK42.60e-5755.17uncharacterized protein LOC111024267 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DX122.14e-5454.60uncharacterized protein LOC111025322 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D7J62.57e-5454.60Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1[more]
A0A6J1C6174.79e-5455.75Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1[more]
A0A6J1DBZ07.10e-5453.45uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..79
e-value: 6.0E-15
score: 57.3
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..70
e-value: 4.0E-8
score: 33.1
NoneNo IPR availablePANTHERPTHR46387POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 2..170
NoneNo IPR availablePANTHERPTHR46387:SF614.7 KDA RIBONUCLEASE H-LIKE PROTEINcoord: 2..170
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC07g_new0003.1MC07g_new0003.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity