MC07g0810 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0810
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	MC07: 15701761 .. 15701868 (-)
RNA-Seq Expression	MC07g0810
Synteny	MC07g0810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCACTTGGTGTCGTAGCTAATCAAGTAGCTTTTGAAGCATGTGTACAAGCTCATAACAAGGGACGTCATCTTGCTCTTGAGGGTAATGAAATTATTTGTGAGGCT

mRNA sequence

AATGCACTTGGTGTCGTAGCTAATCAAGTAGCTTTTGAAGCATGTGTACAAGCTCATAACAAGGGACGTCATCTTGCTCTTGAGGGTAATGAAATTATTTGTGAGGCT

Coding sequence (CDS)

AATGCACTTGGTGTCGTAGCTAATCAAGTAGCTTTTGAAGCATGTGTACAAGCTCATAACAAGGGACGTCATCTTGCTCTTGAGGGTAATGAAATTATTTGTGAGGCT

Protein sequence

NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA

Homology

[Close]

BLAST of MC07g0810 vs. ExPASy Swiss-Prot
Match: A4QKB3 (Ribulose bisphosphate carboxylase large chain OS=Barbarea verna OX=50458 GN=rbcL PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 37
           NA G VAN+VA EACVQA N+GR LA+EGNEII EA
Sbjct: 413 NAPGAVANRVALEACVQARNEGRDLAIEGNEIIREA 448

[Close]

BLAST of MC07g0810 vs. ExPASy Swiss-Prot
Match: O99000 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adenium obesum OX=69375 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 37
           NA G VAN+VA EACVQA N+GR LA+EGNEII EA
Sbjct: 404 NAPGAVANRVALEACVQARNEGRDLAVEGNEIIREA 439

[Close]

BLAST of MC07g0810 vs. ExPASy Swiss-Prot
Match: A4QJC3 (Ribulose bisphosphate carboxylase large chain OS=Aethionema cordifolium OX=434059 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 37
           NA G VAN+VA EACVQA N+GR LA+EGNEII EA
Sbjct: 413 NAPGAVANRVALEACVQARNEGRDLAVEGNEIIREA 448

[Close]

BLAST of MC07g0810 vs. ExPASy Swiss-Prot
Match: A4QJK7 (Ribulose bisphosphate carboxylase large chain OS=Aethionema grandiflorum OX=72657 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 37
           NA G VAN+VA EACVQA N+GR LA+EGNEII EA
Sbjct: 413 NAPGAVANRVALEACVQARNEGRDLAVEGNEIIREA 448

[Close]

BLAST of MC07g0810 vs. ExPASy Swiss-Prot
Match: Q05984 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Apocynum cannabinum OX=13339 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 37
           NA G VAN+VA EACVQA N+GR LA+EGNEII EA
Sbjct: 379 NAPGAVANRVALEACVQARNEGRDLAVEGNEIIREA 414

[Close]

BLAST of MC07g0810 vs. NCBI nr
Match: KAG4110354.1 (hypothetical protein ERO13_D13G043750v2 [Gossypium hirsutum])

HSP 1 Score: 60.1 bits (144), Expect = 3.47e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
          NA G VAN+VA EACVQAHN+GR+L  EGNEIICEA
Sbjct: 43 NAPGAVANRVALEACVQAHNEGRYLTHEGNEIICEA 78

[Close]

BLAST of MC07g0810 vs. NCBI nr
Match: TYI45611.1 (hypothetical protein E1A91_D13G049700v1 [Gossypium mustelinum])

HSP 1 Score: 60.1 bits (144), Expect = 3.97e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
          NA G VAN+VA EACVQAHN+GR+L  EGNEIICEA
Sbjct: 43 NAPGAVANRVALEACVQAHNEGRYLTHEGNEIICEA 78

[Close]

BLAST of MC07g0810 vs. NCBI nr
Match: XP_040965728.1 (ribulose bisphosphate carboxylase large chain-like [Gossypium hirsutum])

HSP 1 Score: 60.1 bits (144), Expect = 9.67e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
           NA G VAN+VA EACVQAHN+GR+L  EGNEIICEA
Sbjct: 93  NAPGAVANRVALEACVQAHNEGRYLTHEGNEIICEA 128

[Close]

BLAST of MC07g0810 vs. NCBI nr
Match: PHT38114.1 (Ribulose bisphosphate carboxylase large chain [Capsicum baccatum])

HSP 1 Score: 57.4 bits (137), Expect = 5.26e-09
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
          NA G VAN+VA EACV+A N+GR LALEGN+IICEA
Sbjct: 58 NAPGAVANRVALEACVKARNEGRDLALEGNDIICEA 93

[Close]

BLAST of MC07g0810 vs. NCBI nr
Match: ACJ02943.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Chuquiraga erinacea])

HSP 1 Score: 59.3 bits (142), Expect = 8.99e-09
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
           NA G VAN+VA EACVQA N+GR LA+EGNEIICEA
Sbjct: 399 NAPGAVANRVALEACVQARNEGRDLAIEGNEIICEA 434

[Close]

BLAST of MC07g0810 vs. ExPASy TrEMBL
Match: A0A5D2RXX6 (RuBisCO_large domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D13G049700v1 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.92e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
          NA G VAN+VA EACVQAHN+GR+L  EGNEIICEA
Sbjct: 43 NAPGAVANRVALEACVQAHNEGRYLTHEGNEIICEA 78

[Close]

BLAST of MC07g0810 vs. ExPASy TrEMBL
Match: A0A2G2VYP4 (Ribulose bisphosphate carboxylase large chain OS=Capsicum baccatum OX=33114 GN=CQW23_21687 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.54e-09
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
          NA G VAN+VA EACV+A N+GR LALEGN+IICEA
Sbjct: 58 NAPGAVANRVALEACVKARNEGRDLALEGNDIICEA 93

[Close]

BLAST of MC07g0810 vs. ExPASy TrEMBL
Match: C4MXJ7 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Chuquiraga erinacea OX=171762 GN=rbcL PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.35e-09
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
           NA G VAN+VA EACVQA N+GR LA+EGNEIICEA
Sbjct: 399 NAPGAVANRVALEACVQARNEGRDLAIEGNEIICEA 434

[Close]

BLAST of MC07g0810 vs. ExPASy TrEMBL
Match: A0A0D2S8G2 (RuBisCO_large domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G048600 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.87e-09
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
          NA G VAN+VA EACVQA N+GR+L  EGNEIICEA
Sbjct: 43 NAPGAVANRVALEACVQARNEGRYLTHEGNEIICEA 78

[Close]

BLAST of MC07g0810 vs. ExPASy TrEMBL
Match: I2EA07 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Helicostylis pedunculata OX=241885 GN=rbcl PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.14e-09
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 36
           NA G VAN+VA EACV+A N+GR LALEGNEIICEA
Sbjct: 388 NAPGAVANRVALEACVKARNEGRDLALEGNEIICEA 423

[Close]

BLAST of MC07g0810 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NALGVVANQVAFEACVQAHNKGRHLALEGNEIICEA 37
           NA G VAN+VA EACVQA N+GR LA+EGNEII EA
Sbjct: 413 NAPGAVANRVALEACVQARNEGRDLAVEGNEIIREA 448

The following BLAST results are available for this feature:

BLAST of MC07g0810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QKB3	1.9e-07	75.00	Ribulose bisphosphate carboxylase large chain OS=Barbarea verna OX=50458 GN=rbcL...	[more]
O99000	2.5e-07	75.00	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adenium obesum OX=69...	[more]
A4QJC3	2.5e-07	75.00	Ribulose bisphosphate carboxylase large chain OS=Aethionema cordifolium OX=43405...	[more]
A4QJK7	2.5e-07	75.00	Ribulose bisphosphate carboxylase large chain OS=Aethionema grandiflorum OX=7265...	[more]
Q05984	2.5e-07	75.00	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Apocynum cannabinum ...	[more]

BLAST of MC07g0810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4110354.1	3.47e-10	77.78	hypothetical protein ERO13_D13G043750v2 [Gossypium hirsutum]	[more]
TYI45611.1	3.97e-10	77.78	hypothetical protein E1A91_D13G049700v1 [Gossypium mustelinum]	[more]
XP_040965728.1	9.67e-10	77.78	ribulose bisphosphate carboxylase large chain-like [Gossypium hirsutum]	[more]
PHT38114.1	5.26e-09	75.00	Ribulose bisphosphate carboxylase large chain [Capsicum baccatum]	[more]
ACJ02943.1	8.99e-09	77.78	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Chuquira...	[more]

BLAST of MC07g0810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2RXX6	1.92e-10	77.78	RuBisCO_large domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A9...	[more]
A0A2G2VYP4	2.54e-09	75.00	Ribulose bisphosphate carboxylase large chain OS=Capsicum baccatum OX=33114 GN=C...	[more]
C4MXJ7	4.35e-09	77.78	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Chuquiraga erinacea ...	[more]
A0A0D2S8G2	4.87e-09	75.00	RuBisCO_large domain-containing protein (Fragment) OS=Gossypium raimondii OX=297...	[more]
I2EA07	8.14e-09	77.78	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Helicostylis peduncu...	[more]

BLAST of MC07g0810 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	1.8e-08	75.00	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 2..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0810.1	MC07g0810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0018105	peptidyl-serine phosphorylation
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0001672	regulation of chromatin assembly or disassembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity