MC07g0780 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0780
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	MC07: 15434256 .. 15434483 (+)
RNA-Seq Expression	MC07g0780
Synteny	MC07g0780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGGCTAAAGCCAACATCGGAGATGTCGTTTTTGTACGGAAACTACGTTTTGAGAGGCGGATTGGGGAGAATTATGGAGAATATTGTATCTGGCGATGGCGTTGTAGTTTATTCGATGCCCGATGTGCCGTTATGGTTCGGTGTGGCGGCCAAGTCGATGCAGGATAGTAAGAAGTTCGATCCCAATCGAATCATGGTGCTTCATCAAGTTGATTATAGGGAGTAC

mRNA sequence

TTGTGGCTAAAGCCAACATCGGAGATGTCGTTTTTGTACGGAAACTACGTTTTGAGAGGCGGATTGGGGAGAATTATGGAGAATATTGTATCTGGCGATGGCGTTGTAGTTTATTCGATGCCCGATGTGCCGTTATGGTTCGGTGTGGCGGCCAAGTCGATGCAGGATAGTAAGAAGTTCGATCCCAATCGAATCATGGTGCTTCATCAAGTTGATTATAGGGAGTAC

Coding sequence (CDS)

TTGTGGCTAAAGCCAACATCGGAGATGTCGTTTTTGTACGGAAACTACGTTTTGAGAGGCGGATTGGGGAGAATTATGGAGAATATTGTATCTGGCGATGGCGTTGTAGTTTATTCGATGCCCGATGTGCCGTTATGGTTCGGTGTGGCGGCCAAGTCGATGCAGGATAGTAAGAAGTTCGATCCCAATCGAATCATGGTGCTTCATCAAGTTGATTATAGGGAGTAC

Protein sequence

LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Homology

[Close]

BLAST of MC07g0780 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-21
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM DVPL FGVAAKS QD +K 
Sbjct: 97  VWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKV 156

Query: 61  DPNRIMVLHQVDYREY 77
           DP  I+V HQ D  EY
Sbjct: 157 DPMAIVVFHQADIGEY 172

[Close]

BLAST of MC07g0780 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K 
Sbjct: 97  VWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKV 156

Query: 61  DPNRIMVLHQVDYREY 77
           DP  I+V HQ D  EY
Sbjct: 157 DPMAIVVFHQADIGEY 172

[Close]

BLAST of MC07g0780 vs. ExPASy Swiss-Prot
Match: Q56P27 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa OX=9823 GN=NIP7 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K 
Sbjct: 97  VWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKV 156

Query: 61  DPNRIMVLHQVDYREY 77
           DP  I+V HQ D  EY
Sbjct: 157 DPMAIVVFHQADIGEY 172

[Close]

BLAST of MC07g0780 vs. ExPASy Swiss-Prot
Match: Q5R9J1 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii OX=9601 GN=NIP7 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K 
Sbjct: 97  VWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKV 156

Query: 61  DPNRIMVLHQVDYREY 77
           DP  I+V HQ D  EY
Sbjct: 157 DPMAIVVFHQADIGEY 172

[Close]

BLAST of MC07g0780 vs. ExPASy Swiss-Prot
Match: Q9CXK8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus OX=10090 GN=Nip7 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-21
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K 
Sbjct: 97  VWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKV 156

Query: 61  DPNRIMVLHQVDYREY 77
           DP  I+V HQ D  EY
Sbjct: 157 DPMAIVVFHQADIGEY 172

[Close]

BLAST of MC07g0780 vs. NCBI nr
Match: CBI24745.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 127 bits (318), Expect = 2.53e-35
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDG+VV+SM DVPL FG+AAKS QD +K 
Sbjct: 72  VWLKPTSEMSFLYGNHVLKGGLGRITENIVAGDGIVVFSMSDVPLGFGIAAKSTQDCRKL 131

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 132 DPNGIVVLHQADIGEY 147

[Close]

BLAST of MC07g0780 vs. NCBI nr
Match: XP_008438877.1 (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo])

HSP 1 Score: 127 bits (319), Expect = 4.58e-35
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQSDIGEY 180

[Close]

BLAST of MC07g0780 vs. NCBI nr
Match: XP_034684934.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Vitis riparia] >RVW20325.1 60S ribosome subunit biogenesis protein NIP7-like [Vitis vinifera])

HSP 1 Score: 127 bits (319), Expect = 4.58e-35
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVAGDGVVVFSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQADIGEY 180

[Close]

BLAST of MC07g0780 vs. NCBI nr
Match: KAF7146724.1 (hypothetical protein RHSIM_Rhsim04G0220600 [Rhododendron simsii])

HSP 1 Score: 127 bits (319), Expect = 4.58e-35
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVAGDGVVVFSMADVPLGFGIAAKSTQDCRKM 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQADIGEY 180

[Close]

BLAST of MC07g0780 vs. NCBI nr
Match: XP_004134205.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100.1 hypothetical protein Csa_009928 [Cucumis sativus])

HSP 1 Score: 127 bits (319), Expect = 4.58e-35
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQSDIGEY 180

[Close]

BLAST of MC07g0780 vs. ExPASy TrEMBL
Match: A0A438CAP4 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera OX=29760 GN=nip7_0 PE=3 SV=1)

HSP 1 Score: 127 bits (319), Expect = 2.22e-35
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVAGDGVVVFSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQADIGEY 180

[Close]

BLAST of MC07g0780 vs. ExPASy TrEMBL
Match: A0A0A0L578 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 127 bits (319), Expect = 2.22e-35
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQSDIGEY 180

[Close]

BLAST of MC07g0780 vs. ExPASy TrEMBL
Match: A0A1S3AXI3 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=LOC103483837 PE=3 SV=1)

HSP 1 Score: 127 bits (319), Expect = 2.22e-35
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQSDIGEY 180

[Close]

BLAST of MC07g0780 vs. ExPASy TrEMBL
Match: A0A5D3CY17 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00960 PE=3 SV=1)

HSP 1 Score: 127 bits (319), Expect = 2.48e-35
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQSDIGEY 180

[Close]

BLAST of MC07g0780 vs. ExPASy TrEMBL
Match: A5BNR0 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera OX=29760 GN=VIT_05s0094g01280 PE=3 SV=1)

HSP 1 Score: 127 bits (318), Expect = 3.15e-35
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDG+VV+SM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITENIVAGDGIVVFSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 76
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQADIGEY 180

[Close]

BLAST of MC07g0780 vs. TAIR 10
Match: AT4G15770.1 (RNA binding )

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-28
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKF 60
           +WLKPTSEMSFLYGN+VL+GGLGRI ++IV GDGVVV+SM DVPL FG+AAKS QD +K 
Sbjct: 105 VWLKPTSEMSFLYGNHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKL 164

Query: 61  DPNRIMVLHQVDYREY 77
           DPN I+VLHQ D  EY
Sbjct: 165 DPNGIVVLHQADIGEY 180

The following BLAST results are available for this feature:

BLAST of MC07g0780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9WV50	1.3e-21	64.47	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101...	[more]
Q9Y221	1.7e-21	63.16	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=...	[more]
Q56P27	1.7e-21	63.16	60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa OX=9823 GN=NI...	[more]
Q5R9J1	1.7e-21	63.16	60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii OX=9601 GN=...	[more]
Q9CXK8	2.2e-21	63.16	60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus OX=10090 GN...	[more]

BLAST of MC07g0780 vs. NCBI nr


Match Name	E-value	Identity	Description
CBI24745.3	2.53e-35	75.00	unnamed protein product, partial [Vitis vinifera]	[more]
XP_008438877.1	4.58e-35	77.63	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo]	[more]
XP_034684934.1	4.58e-35	76.32	60S ribosome subunit biogenesis protein NIP7 homolog [Vitis riparia] >RVW20325.1...	[more]
KAF7146724.1	4.58e-35	76.32	hypothetical protein RHSIM_Rhsim04G0220600 [Rhododendron simsii]	[more]
XP_004134205.1	4.58e-35	77.63	60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100...	[more]

BLAST of MC07g0780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CAP4	2.22e-35	76.32	60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera OX=29760 ...	[more]
A0A0A0L578	2.22e-35	77.63	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 ...	[more]
A0A1S3AXI3	2.22e-35	77.63	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3CY17	2.48e-35	77.63	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo var. makuwa...	[more]
A5BNR0	3.15e-35	75.00	60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera OX=29760 ...	[more]

BLAST of MC07g0780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15770.1	3.3e-28	73.68	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 1..74 e-value: 0.0092 score: 25.2
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 1..76 e-value: 4.3E-27 score: 95.8
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 2..76 e-value: 8.1E-12 score: 45.2
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 2..76
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 2..76
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0780.1	MC07g0780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0003723	RNA binding