MC07g0685 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC07g0685
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionphotosystem II D1 precursor processing protein PSB27-H2, chloroplastic
LocationMC07: 14662580 .. 14664996 (+)
RNA-Seq ExpressionMC07g0685
SyntenyMC07g0685
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTGTATCCACATTTCCGGGACGATTATAAAAACCCAAATCCAAACGATAAAGCTTGTTTCTTTCCAAATCCCAATTCGCGCTGCACCAAGAGATCGACGGAAAGCTCTTCTCTGCATATCCAGAAGTAAGAACTTGAACTTGAACTAATTATCTTCCAATTTCTTTACCTGATTAGGTTTCCAAGTTCATCCTCTTCTCAGGATTCGGCTTCCCACTGATTCTTCGCTGCTCTGTAACAATGCTGGCAGAAAGATAAAGATTAGGTACGCACACGCACACCCATGGCTCTGGTTGACTTGATCAGTCTGTTCCTGTCGCAAATTCGGTATTCAATTGATGAACAGAATCTAATTCGACCACAACAGGCTTAATGAGTACAGCATTTGAAAAGATTTCTATGGTTTGGTTTTCTAATTTGTTCTAATCAGAGGCTGCAATGGGGAGGTTTGTTTTACACGGAACCCACGATTTCACAGAATAATGGTTTATTTTCCTGCAGGGGATGAAGCTGGAGCCGGAAGTGTATAGAGGCTCATTTTGGTTGGAGTAATAAACTAGGACGAAGATGGCTGCATTTATGCAAGCAAAGATCTGTCCCAGAACTACTTCATCATTGGATAGAATCTTTAGAAGTGAAAATGGGGGTGAGTAACATCACCTGTAGCCATAAGTTTATGTTATGGATCTGTAGCCATTGTCAAATCTAAATTTCGTTCGTAAGACAGCCTCATTCTTGGGAAAATGAGGATTCTTTTAGATGCTTTTAAATTTCAAATGTATTGCTGTAGGCATGGTCTTGAATTACTCTCACGTTCCTGAATCTGAATGCACCCATACAAGAACTTCATTCTTCTACTCTTTCTTTCTTAACAGATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCATCTCAAGAAGTTTGTAGACGTCAGTTATTGTGTAATGGCATGTCATTGGTTGTGTTTCTCGCATTTAACAATGGATCGATGCCATTGCTGGCCCGGGCCGAAGAAACCCCAAATGACAAGCAGGAGGAGGATAATGGAGTTGTCGGGGTGATTAAATCGATATTTGATCCAAATGAGAGAACCAAATCCGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGTTGGTGAAGACACTGCGTGAGTCAGTACAGGAAGACCCCAAGGATGGCGCTAAATTTAGACGAACTGCAGACGCTGCAAAAGAATCGATTCGAGATTATTTAAGCAATTGGTTGGGGCAGCAAACAGTTGCTCAAGAGGTATACAAGTGAAAAACAGATAATGTAGTTCATGATGATCATCAGGAATTTATAACATTTCTTCCATAAATCACTTGCAGGAATCTTACGCTGAGCTAGAGAAAGCAATAAGGTCATTGGCCAGCTTTTATGCAAAGGCTGGACCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATATACTGAATGATCTGGACAAGGCTGAAGAATTCTTGTAATTGACTGGTTTTAGAGCTCTAAATGAATATTTTTGTTACATAACATTTCACCTCTGAGATTTTTGAGTTTTGCGGCTACTTCTGTTGCTATGCTCCTCCATCCTTCTTGATCACACAAAGTGTTCAGATTCAATACTTTCTCATCTGTGAAATTGGCTAAGTAGAAAAAGAAATTTACGTTCAATGGATTGAACAAGAAAAAGAACAGAAAATTGTAAAACTCAGTGTAGTAGCTGATGAGGTCTTGTACATCACTTACTAAAAACCTAGCATAAGTGTTCACATCTTCTGAAATTGGCTACTGTGTAACATGTGACCATTTGAATGTTGTAAATCAGTTTTTGGACTACAATGAAATTCATAATTTTCTAGTGAAATACTACAAATTTTAGAACTTCCTAACATCTGGATAAGCCATTTCTGCTCTTATCCTCTCTCCCAAATGCATAATGAATAAAAAGATAAAATAAGAATAAATAAAATAAATCAATCCTCAGCCACTGAATTTGAGCCTTTGTTGGTCAGTATTATTCAACAGAAGCAGTGTTTTGCTCAAGGCACACTAAAGCACAATAATCCTTTAGAATTTAAGCACGAGGCCCAAAAAAAAAAAGTGCGAGACGGCACTGGGTATCAAATGTATAAATATCATTACAACAGAGACATATGACGAAAAATGAGTCAAGCTGAAGCATAAGCTATTTTCATATACAATATTGTTCTATCATCAACCATACAAGAATCCTTCAGCCATCACCTTTCTGCTCAAACATCCATCTCCAAACAGGACCGAAGCAAGCGTTAATCATTCGCTTATAAAGTGGAGCTCCGATCAAATATACCTTACTGTATGCACAAATTAGTCTTTCCATGATGATGTCGACAATCAACTACGTGATAACACACCTTTTGAACTGTA

mRNA sequence

GTCTGTATCCACATTTCCGGGACGATTATAAAAACCCAAATCCAAACGATAAAGCTTGTTTCTTTCCAAATCCCAATTCGCGCTGCACCAAGAGATCGACGGAAAGCTCTTCTCTGCATATCCAGAAGATTCGGCTTCCCACTGATTCTTCGCTGCTCTGTAACAATGCTGGCAGAAAGATAAAGATTAGGGGATGAAGCTGGAGCCGGAAGTGTATAGAGGCTCATTTTGGTTGGAGTAATAAACTAGGACGAAGATGGCTGCATTTATGCAAGCAAAGATCTGTCCCAGAACTACTTCATCATTGGATAGAATCTTTAGAAGTGAAAATGGGGATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCATCTCAAGAAGTTTGTAGACGTCAGTTATTGTGTAATGGCATGTCATTGGTTGTGTTTCTCGCATTTAACAATGGATCGATGCCATTGCTGGCCCGGGCCGAAGAAACCCCAAATGACAAGCAGGAGGAGGATAATGGAGTTGTCGGGGTGATTAAATCGATATTTGATCCAAATGAGAGAACCAAATCCGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGTTGGTGAAGACACTGCGTGAGTCAGTACAGGAAGACCCCAAGGATGGCGCTAAATTTAGACGAACTGCAGACGCTGCAAAAGAATCGATTCGAGATTATTTAAGCAATTGGTTGGGGCAGCAAACAGTTGCTCAAGAGGAATCTTACGCTGAGCTAGAGAAAGCAATAAGGTCATTGGCCAGCTTTTATGCAAAGGCTGGACCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATATACTGAATGATCTGGACAAGGCTGAAGAATTCTTGTAATTGACTGGTTTTAGAGCTCTAAATGAATATTTTTGTTACATAACATTTCACCTCTGAGATTTTTGAGTTTTGCGGCTACTTCTGTTGCTATGCTCCTCCATCCTTCTTGATCACACAAAGTGTTCAGATTCAATACTTTCTCATCTGTGAAATTGGCTAAGTAGAAAAAGAAATTTACGTTCAATGGATTGAACAAGAAAAAGAACAGAAAATTGTAAAACTCAGTGTAGTAGCTGATGAGGTCTTGTACATCACTTACTAAAAACCTAGCATAAGTGTTCACATCTTCTGAAATTGGCTACTGTGTAACATGTGACCATTTGAATGTTGTAAATCAGTTTTTGGACTACAATGAAATTCATAATTTTCTAGTGAAATACTACAAATTTTAGAACTTCCTAACATCTGGATAAGCCATTTCTGCTCTTATCCTCTCTCCCAAATGCATAATGAATAAAAAGATAAAATAAGAATAAATAAAATAAATCAATCCTCAGCCACTGAATTTGAGCCTTTGTTGGTCAGTATTATTCAACAGAAGCAGTGTTTTGCTCAAGGCACACTAAAGCACAATAATCCTTTAGAATTTAAGCACGAGGCCCAAAAAAAAAAAGTGCGAGACGGCACTGGGTATCAAATGTATAAATATCATTACAACAGAGACATATGACGAAAAATGAGTCAAGCTGAAGCATAAGCTATTTTCATATACAATATTGTTCTATCATCAACCATACAAGAATCCTTCAGCCATCACCTTTCTGCTCAAACATCCATCTCCAAACAGGACCGAAGCAAGCGTTAATCATTCGCTTATAAAGTGGAGCTCCGATCAAATATACCTTACTGTATGCACAAATTAGTCTTTCCATGATGATGTCGACAATCAACTACGTGATAACACACCTTTTGAACTGTA

Coding sequence (CDS)

ATGGCTGCATTTATGCAAGCAAAGATCTGTCCCAGAACTACTTCATCATTGGATAGAATCTTTAGAAGTGAAAATGGGGATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCATCTCAAGAAGTTTGTAGACGTCAGTTATTGTGTAATGGCATGTCATTGGTTGTGTTTCTCGCATTTAACAATGGATCGATGCCATTGCTGGCCCGGGCCGAAGAAACCCCAAATGACAAGCAGGAGGAGGATAATGGAGTTGTCGGGGTGATTAAATCGATATTTGATCCAAATGAGAGAACCAAATCCGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGTTGGTGAAGACACTGCGTGAGTCAGTACAGGAAGACCCCAAGGATGGCGCTAAATTTAGACGAACTGCAGACGCTGCAAAAGAATCGATTCGAGATTATTTAAGCAATTGGTTGGGGCAGCAAACAGTTGCTCAAGAGGAATCTTACGCTGAGCTAGAGAAAGCAATAAGGTCATTGGCCAGCTTTTATGCAAAGGCTGGACCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATATACTGAATGATCTGGACAAGGCTGAAGAATTCTTGTAA

Protein sequence

MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLDKAEEFL
Homology
[Close]
BLAST of MC07g0685 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.2e-50
Identity = 102/140 (72.86%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 67  LLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRESVQE 126
           L A+A E   +K +E  GVVG  K++FDPNERTKSGK LPKAYLKSARE+VKT+RES++E
Sbjct: 63  LQAQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKE 122

Query: 127 DPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAP 186
           +PKD AKFRR+ADAAKESIRDYLSNW GQ+TVA EESY ELE  IR+LA FY+KAGPSAP
Sbjct: 123 NPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAP 182

Query: 187 LPEAVKSDILNDLDKAEEFL 207
           LP+ VK++IL+DL+KAEEFL
Sbjct: 183 LPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of MC07g0685 vs. NCBI nr
Match: XP_022138383.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138384.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138385.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138386.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia])

HSP 1 Score: 399 bits (1025), Expect = 5.87e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPEAVKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206

[Close]
BLAST of MC07g0685 vs. NCBI nr
Match: XP_022958810.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958811.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958812.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958813.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >KAG6574982.1 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340 bits (871), Expect = 1.68e-116
Identity = 176/206 (85.44%), Postives = 184/206 (89.32%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMS V FL F
Sbjct: 1   MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NN   PLLARAEE PNDK+EE+NGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]
BLAST of MC07g0685 vs. NCBI nr
Match: XP_023549108.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023549109.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023549110.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339 bits (870), Expect = 2.39e-116
Identity = 176/206 (85.44%), Postives = 184/206 (89.32%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMSLV FL F
Sbjct: 1   MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRNLLCNGMSLVAFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NN   PLLARAEE PND +EE+NGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNALTPLLARAEEMPNDNEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]
BLAST of MC07g0685 vs. NCBI nr
Match: XP_038875361.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida] >XP_038875362.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida])

HSP 1 Score: 336 bits (861), Expect = 5.62e-115
Identity = 173/206 (83.98%), Postives = 187/206 (90.78%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           MAAF+QA ICP T S+LDR  +SENG KLRSRSQVVLPSQEVCRR L+C+GMSLVVFL  
Sbjct: 1   MAAFIQANICPTTISTLDRNLKSENGHKLRSRSQVVLPSQEVCRRHLMCSGMSLVVFLTC 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NNG  P  ARAEETPND +EEDNGV+G IKSIFDPNE+TKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGLTPSSARAEETPND-EEEDNGVIGTIKSIFDPNEKTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQ+TV +EESY  LEKAI+SLA FYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQRTVVREESYVVLEKAIKSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPEAVKSDIL+DLDKAEEFL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEEFL 205

[Close]
BLAST of MC07g0685 vs. NCBI nr
Match: XP_023006140.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima] >XP_023006141.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima] >XP_023006142.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 333 bits (855), Expect = 4.61e-114
Identity = 174/206 (84.47%), Postives = 182/206 (88.35%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           M AF+QAKICP T S+ DRI  SENG KLRS SQVVLPSQE+CRR LLCNGMSLV FL F
Sbjct: 1   MTAFIQAKICPATISTFDRI-SSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NN   P LARAEETPN K+EE+NGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]
BLAST of MC07g0685 vs. ExPASy TrEMBL
Match: A0A6J1CCV0 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009571 PE=3 SV=1)

HSP 1 Score: 399 bits (1025), Expect = 2.84e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPEAVKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206

[Close]
BLAST of MC07g0685 vs. ExPASy TrEMBL
Match: A0A6J1H448 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459969 PE=3 SV=1)

HSP 1 Score: 340 bits (871), Expect = 8.15e-117
Identity = 176/206 (85.44%), Postives = 184/206 (89.32%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMS V FL F
Sbjct: 1   MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NN   PLLARAEE PNDK+EE+NGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]
BLAST of MC07g0685 vs. ExPASy TrEMBL
Match: A0A6J1KWY8 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498971 PE=3 SV=1)

HSP 1 Score: 333 bits (855), Expect = 2.23e-114
Identity = 174/206 (84.47%), Postives = 182/206 (88.35%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           M AF+QAKICP T S+ DRI  SENG KLRS SQVVLPSQE+CRR LLCNGMSLV FL F
Sbjct: 1   MTAFIQAKICPATISTFDRI-SSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NN   P LARAEETPN K+EE+NGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDILNDLDKAEEFL
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]
BLAST of MC07g0685 vs. ExPASy TrEMBL
Match: A0A1S3BG68 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489666 PE=3 SV=1)

HSP 1 Score: 329 bits (844), Expect = 1.10e-112
Identity = 170/206 (82.52%), Postives = 182/206 (88.35%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           MAAF+QAKICPRT S+LDR   SENG KL SRSQV LPSQE+CRR L+ NGMSLVVFL F
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NNG  P  A AEE PN+ +EEDNGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+ QEESY  LEKAIRSLA FYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPEAVKSDIL+DLDKAE  L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]
BLAST of MC07g0685 vs. ExPASy TrEMBL
Match: A0A5D3D0K6 (Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00120 PE=3 SV=1)

HSP 1 Score: 327 bits (839), Expect = 6.33e-112
Identity = 169/206 (82.04%), Postives = 181/206 (87.86%), Query Frame = 0 

Query: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60
           MAAF+QAKICPRT  +LDR   SENG KL SRSQV LPSQE+CRR L+ NGMSLVVFL F
Sbjct: 1   MAAFIQAKICPRTIPTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120
           NNG  P  A AEE PN+ +EEDNGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+ QEESY  LEKAIRSLA FYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206
           AGPSAPLPEAVKSDIL+DLDKAE  L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]
BLAST of MC07g0685 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-51
Identity = 102/140 (72.86%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 67  LLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRESVQE 126
           L A+A E   +K +E  GVVG  K++FDPNERTKSGK LPKAYLKSARE+VKT+RES++E
Sbjct: 63  LQAQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKE 122

Query: 127 DPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAP 186
           +PKD AKFRR+ADAAKESIRDYLSNW GQ+TVA EESY ELE  IR+LA FY+KAGPSAP
Sbjct: 123 NPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAP 182

Query: 187 LPEAVKSDILNDLDKAEEFL 207
           LP+ VK++IL+DL+KAEEFL
Sbjct: 183 LPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:
BLAST of MC07g0685 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVZ96.2e-5072.86Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
BLAST of MC07g0685 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138383.15.87e-140100.00photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordic... [more]
XP_022958810.11.68e-11685.44photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit... [more]
XP_023549108.12.39e-11685.44photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit... [more]
XP_038875361.15.62e-11583.98photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincas... [more]
XP_023006140.14.61e-11484.47photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit... [more]
BLAST of MC07g0685 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CCV02.84e-140100.00photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momord... [more]
A0A6J1H4488.15e-11785.44photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb... [more]
A0A6J1KWY82.23e-11484.47photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb... [more]
A0A1S3BG681.10e-11282.52photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumi... [more]
A0A5D3D0K66.33e-11282.04Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MC07g0685 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05385.14.4e-5172.86photosystem II 11 kDa protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 44..206
e-value: 1.4E-47
score: 161.5
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 25..206
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 80..206
score: 21.028938
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 98..206
e-value: 4.6E-30
score: 106.2
NoneNo IPR availablePANTHERPTHR34041:SF3PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTICcoord: 25..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC07g0685.1MC07g0685.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II