MC07g0532 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC07g0532
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC07: 13389766 .. 13390083 (-)
RNA-Seq ExpressionMC07g0532
SyntenyMC07g0532
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGGATCAAACCAGAAATCTCATTACTATCAAGCTGCAACTGCAAAAGATTTGTGGCATTGGAAAGATTTGAAGGAATCGAACCAGAAACATTATTGCTACTAATCATGAACTCCTCAAGCAAAGAAAGCCCCCCAATTGTCAAAGGAATAGCCCCAGAAAGAGAATTCAAAGAAAGATCAATCTTTCTCAAGCTCACACACCCACCAATTTCAGGTGGGATTGCTCCAATCAACTCATTCTGCCATAGAAACAGCTGCTCAAGTTTCTGCAGCTTCCCAATCTCCGGTGGGATAGAGCCAGAGAGGCTGTTTTCA

mRNA sequence

GGTGGGATCAAACCAGAAATCTCATTACTATCAAGCTGCAACTGCAAAAGATTTGTGGCATTGGAAAGATTTGAAGGAATCGAACCAGAAACATTATTGCTACTAATCATGAACTCCTCAAGCAAAGAAAGCCCCCCAATTGTCAAAGGAATAGCCCCAGAAAGAGAATTCAAAGAAAGATCAATCTTTCTCAAGCTCACACACCCACCAATTTCAGGTGGGATTGCTCCAATCAACTCATTCTGCCATAGAAACAGCTGCTCAAGTTTCTGCAGCTTCCCAATCTCCGGTGGGATAGAGCCAGAGAGGCTGTTTTCA

Coding sequence (CDS)

GGTGGGATCAAACCAGAAATCTCATTACTATCAAGCTGCAACTGCAAAAGATTTGTGGCATTGGAAAGATTTGAAGGAATCGAACCAGAAACATTATTGCTACTAATCATGAACTCCTCAAGCAAAGAAAGCCCCCCAATTGTCAAAGGAATAGCCCCAGAAAGAGAATTCAAAGAAAGATCAATCTTTCTCAAGCTCACACACCCACCAATTTCAGGTGGGATTGCTCCAATCAACTCATTCTGCCATAGAAACAGCTGCTCAAGTTTCTGCAGCTTCCCAATCTCCGGTGGGATAGAGCCAGAGAGGCTGTTTTCA

Protein sequence

GGIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKERSIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS
Homology
BLAST of MC07g0532 vs. NCBI nr
Match: CAA2626194.1 (unnamed protein product [Spirodela intermedia] >CAA7402248.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 65.9 bits (159), Expect = 4.52e-11
Identity = 41/105 (39.05%), Postives = 49/105 (46.67%), Query Frame = 0

Query: 2   GIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKERS 61
           GI P ++LLSS    RF       G+ PE   +L  +  S    P V G  P   F ERS
Sbjct: 24  GIVPVMALLSSSMSVRFPQSASCAGMGPEIWFMLSCSCWSAVRLPKVAGTTPLSVFMERS 83

Query: 62  IFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS 106
             +   H P SGG+ P   F  R    S    P  GG+EPERLFS
Sbjct: 84  TTVSSEHLPSSGGMNPTRLFFQRRRFLSLLRLPSWGGMEPERLFS 128

BLAST of MC07g0532 vs. NCBI nr
Match: PIN07431.1 (hypothetical protein CDL12_19998 [Handroanthus impetiginosus])

HSP 1 Score: 57.4 bits (137), Expect = 7.70e-08
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 0

Query: 46  PIVKGIAPEREFKERSIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLF 105
           PI  GI P R  K R    +    PI GG++P N    R+  + FC FPISGG+EPE  F
Sbjct: 24  PITGGIVPVRLLKPRRKIKRFVRFPIVGGMSPENWLVERSKDNKFCKFPISGGMEPENAF 83

BLAST of MC07g0532 vs. NCBI nr
Match: VVV79764.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 54.3 bits (129), Expect = 3.54e-07
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 0

Query: 50  GIAPEREFKERSIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPE 102
           G+AP+RE  ERS   K   PP S G+ P N FCH  +     S PISGGI PE
Sbjct: 4   GMAPDRELCERSSDCKAAQPPSSAGMYPSNRFCHAKNTVRPDSRPISGGIGPE 56

BLAST of MC07g0532 vs. NCBI nr
Match: KAF4387110.1 (hypothetical protein G4B88_024682 [Cannabis sativa])

HSP 1 Score: 55.5 bits (132), Expect = 3.17e-06
Identity = 32/106 (30.19%), Postives = 51/106 (48.11%), Query Frame = 0

Query: 1   GGIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKER 60
           G    ++   ++ N K  +   +  G  P  L +  +N+S   S  I+ G +P+      
Sbjct: 148 GSFPKKLLFPNATNFKLGLFFPKSRGTFPVKLFVKTLNTSKLRSMEILTGNSPDSWLVST 207

Query: 61  SIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS 106
           +  ++ +  PISG I P   F  R +  SF  FPIS GI+P +LFS
Sbjct: 208 AKCVRNSRFPISGAIVPSKLFLERTTKMSFVKFPISEGIKPVKLFS 253

BLAST of MC07g0532 vs. NCBI nr
Match: BAS92481.1 (Os05g0170250 [Oryza sativa Japonica Group])

HSP 1 Score: 55.5 bits (132), Expect = 3.41e-06
Identity = 38/104 (36.54%), Postives = 46/104 (44.23%), Query Frame = 0

Query: 1   GGIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMN-SSSKESPPIVKGIAPEREFKE 60
           GGI P   L    +           GI PE+L  L  + + S  S P   GI P  EF +
Sbjct: 184 GGIWPWSWLEERLSLSSLTRSPSDAGISPESLFRLRSSITCSSGSCPSSAGIGPSSEFSD 243

Query: 61  RSIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPER 103
                 L H   SGG+ P+  F  R    S  SFPISGG+ PER
Sbjct: 244 SRSSYSLLHRRSSGGMTPVKPFFCRFRTLSDVSFPISGGMLPER 287

BLAST of MC07g0532 vs. ExPASy TrEMBL
Match: A0A0A9AF87 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.86e-19
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 0

Query: 3   IKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKERSI 62
           ++PEISL+SSC+C   VAL    G+ P  LL L + S S  S P   G+APE E  ERS 
Sbjct: 1   MRPEISLVSSCSCTSAVALASAGGMAPVRLLSLSIRSCSAGSRPSTAGMAPEMELMERSS 60

Query: 63  FLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS 106
                  P   G+ P+++FCHR+S  S  S P SGG  PE  FS
Sbjct: 61  DTSDVRLPKVSGMGPVSAFCHRSSFCSRGSAPSSGGSGPESEFS 104

BLAST of MC07g0532 vs. ExPASy TrEMBL
Match: J3LVE7 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.84e-16
Identity = 46/106 (43.40%), Postives = 56/106 (52.83%), Query Frame = 0

Query: 1   GGIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKER 60
           GG++PEISL+SSC+C   VA     G+ P  LL L M S S    P   GIAPE    ER
Sbjct: 481 GGMRPEISLVSSCSCTSAVAFASPGGMVPVMLLSLSMRSCSAGRRPSDAGIAPEMALMER 540

Query: 61  SIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS 106
           S   +    P   G+ P++ FCH +S  S  S P  GG  PE  FS
Sbjct: 541 SSETREVRLPNESGMGPVSEFCHSSSFCSCGSAPSDGGSGPESEFS 586

BLAST of MC07g0532 vs. ExPASy TrEMBL
Match: A0A0A9IGP3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.02e-13
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0

Query: 19  VALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKERSIFLKLTHPPISGGIAPI 78
           V LE   G+ P +  +L  +     S P + G+ P REF +RS+ +   H P SGGIAP 
Sbjct: 6   VQLESSGGMAPVSWFVLSCSCWRFGSSPKLAGMLPVREFNDRSMSVSSLHCPSSGGIAPT 65

Query: 79  NSFCHRNSCSSFCSFPISGGIEPERLF 105
           + FCHR+S  SF S+P   GI PER F
Sbjct: 66  SWFCHRSSVCSFRSWPSCAGIGPEREF 92

BLAST of MC07g0532 vs. ExPASy TrEMBL
Match: A0A7I8KYV3 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09011901 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.19e-11
Identity = 41/105 (39.05%), Postives = 49/105 (46.67%), Query Frame = 0

Query: 2   GIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKERS 61
           GI P ++LLSS    RF       G+ PE   +L  +  S    P V G  P   F ERS
Sbjct: 24  GIVPVMALLSSSMSVRFPQSASCAGMGPEIWFMLSCSCWSAVRLPKVAGTTPLSVFMERS 83

Query: 62  IFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS 106
             +   H P SGG+ P   F  R    S    P  GG+EPERLFS
Sbjct: 84  TTVSSEHLPSSGGMNPTRLFFQRRRFLSLLRLPSWGGMEPERLFS 128

BLAST of MC07g0532 vs. ExPASy TrEMBL
Match: A0A0E0P4W8 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.08e-11
Identity = 41/106 (38.68%), Postives = 54/106 (50.94%), Query Frame = 0

Query: 1   GGIKPEISLLSSCNCKRFVALERFEGIEPETLLLLIMNSSSKESPPIVKGIAPEREFKER 60
           GG++PE++L+SS +    VA     G+ P  LL L M S S    P   G+APE    ER
Sbjct: 469 GGMRPEMALVSSWSWTSDVAFASAGGMVPVRLLSLSMRSCSAGRRPSDAGMAPEMALMER 528

Query: 61  SIFLKLTHPPISGGIAPINSFCHRNSCSSFCSFPISGGIEPERLFS 106
           S   +    P   G+ P++ FCH +S  S  S P  GG  PE  FS
Sbjct: 529 SRETREVRLPKVSGMGPVSEFCHSSSFCSRGSAPSDGGSGPESEFS 574

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
CAA2626194.14.52e-1139.05unnamed protein product [Spirodela intermedia] >CAA7402248.1 unnamed protein pro... [more]
PIN07431.17.70e-0845.00hypothetical protein CDL12_19998 [Handroanthus impetiginosus][more]
VVV79764.13.54e-0750.94unnamed protein product, partial [Nymphaea colorata][more]
KAF4387110.13.17e-0630.19hypothetical protein G4B88_024682 [Cannabis sativa][more]
BAS92481.13.41e-0636.54Os05g0170250 [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
A0A0A9AF874.86e-1945.19Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
J3LVE77.84e-1643.40Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A0A9IGP31.02e-1343.68Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7I8KYV32.19e-1139.05Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09011901 PE=4 SV... [more]
A0A0E0P4W83.08e-1138.68Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC07g0532.1MC07g0532.1mRNA