MC07g0230 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0230
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	(thale cress) hypothetical protein
Location	MC07: 6878254 .. 6878615 (+)
RNA-Seq Expression	MC07g0230
Synteny	MC07g0230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACGGTGACGAAGGTAACCTACTTTCGGTGGACGCGGAGCCAACGAGTTCAGTCGAACAGCGTAACGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAACAGAGGAGAGCTTACCGTTTGTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCAACAAGAGAGAATCTTGCTGCTTACTTGCTATATCCCCGCGTTCTTGCACGGCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAA

mRNA sequence

ATGCTGACGGTGACGAAGGTAACCTACTTTCGGTGGACGCGGAGCCAACGAGTTCAGTCGAACAGCGTAACGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAACAGAGGAGAGCTTACGTTTGTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCAACAAGAGAGAATCTTGCTGCTTACTTGCTATATCCCTTCTTGCACGGCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAA

Coding sequence (CDS)

ATGCTGACGGTGACGAAGGTAACCTACTTTCGGTGGACGCGGAGCCAACGAGTTCAGTCGAACAGCGTAACGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAACAGAGGAGAGCTTACGTTTGTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCAACAAGAGAGAATCTTGCTGCTTACTTGCTATATCCCTTCTTGCACGGCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAA

Protein sequence

MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTEESLRLFLLESRACCSRSTRENLAAYLLYPFLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACK

Homology

[Close]

BLAST of MC07g0230 vs. NCBI nr
Match: KAG2247429.1 (hypothetical protein Bca52824_087057 [Brassica carinata])

HSP 1 Score: 105 bits (263), Expect = 1.26e-26
Identity = 70/120 (58.33%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTEESLRLFLLESRACC 60
           MLTVTKVT FRWTRSQRVQS SVTSLRLQKRSPTLI         +E   L  +  R+C 
Sbjct: 1   MLTVTKVTDFRWTRSQRVQSKSVTSLRLQKRSPTLIV------GPKEPCCLLAIFPRSCM 60

Query: 61  SRSTRENLAAYLLYPFLHGSARSSSPASPFPLSPFYRPK-QGRMEYSQVVRHRFLVPACK 119
           +R+                      PASPFPL P YRPK +GRMEYSQVVRHRFLVPACK
Sbjct: 61  ARA-------------------QPRPASPFPLPP-YRPKLRGRMEYSQVVRHRFLVPACK 94

[Close]

BLAST of MC07g0230 vs. NCBI nr
Match: KAG2308121.1 (hypothetical protein Bca52824_027869 [Brassica carinata])

HSP 1 Score: 105 bits (263), Expect = 2.48e-25
Identity = 70/120 (58.33%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTEESLRLFLLESRACC 60
           MLTVTKVT FRWTRSQRVQS SVTSLRLQKRSPTLI         +E   L  +  R+C 
Sbjct: 117 MLTVTKVTDFRWTRSQRVQSKSVTSLRLQKRSPTLIV------GPKEPCCLLAIFPRSCM 176

Query: 61  SRSTRENLAAYLLYPFLHGSARSSSPASPFPLSPFYRPK-QGRMEYSQVVRHRFLVPACK 119
           +R+                      PASPFPL P YRPK +GRMEYSQVVRHRFLVPACK
Sbjct: 177 ARA-------------------QPRPASPFPLPP-YRPKLRGRMEYSQVVRHRFLVPACK 210

[Close]

BLAST of MC07g0230 vs. NCBI nr
Match: CAN65992.1 (hypothetical protein VITISV_042149 [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 1.08e-17
Identity = 64/122 (52.46%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTEESLRLFLLESRACC 60
           MLTVTKVT FRWTRSQRVQSNSVTSL                                  
Sbjct: 84  MLTVTKVTDFRWTRSQRVQSNSVTSL---------------------------------- 143

Query: 61  SRSTRENLAAYLLYPFLHGSARSSSPASP-FPLSPF--YRPKQGRMEYSQVVRHRFLVPA 119
               RENLAAYLLYP +   AR  S   P F L PF     K GRMEYSQVVRHRFLVPA
Sbjct: 144 ----RENLAAYLLYPRV--LARLGSFFEPCFSLLPFPVLPSKTGRMEYSQVVRHRFLVPA 165

[Close]

BLAST of MC07g0230 vs. NCBI nr
Match: KJB09807.1 (hypothetical protein B456_001G168300, partial [Gossypium raimondii])

HSP 1 Score: 82.4 bits (202), Expect = 2.49e-16
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 76  FLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACK 119
           FLHGSARSSSPASPFPLSPF   K GRMEYSQVVRHRFLVPACK
Sbjct: 78  FLHGSARSSSPASPFPLSPFLPSKTGRMEYSQVVRHRFLVPACK 121

[Close]

BLAST of MC07g0230 vs. NCBI nr
Match: PHT81424.1 (hypothetical protein T459_14439 [Capsicum annuum] >PHT89489.1 hypothetical protein T459_04602 [Capsicum annuum])

HSP 1 Score: 79.0 bits (193), Expect = 5.78e-16
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTE 46
           MLTVTKVT FRWTRSQRV+SNSVTSLRLQK SPTLIGIALQANR E
Sbjct: 72  MLTVTKVTDFRWTRSQRVRSNSVTSLRLQKPSPTLIGIALQANRAE 117

[Close]

BLAST of MC07g0230 vs. ExPASy TrEMBL
Match: A5BTN0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042149 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.24e-18
Identity = 64/122 (52.46%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTEESLRLFLLESRACC 60
           MLTVTKVT FRWTRSQRVQSNSVTSL                                  
Sbjct: 84  MLTVTKVTDFRWTRSQRVQSNSVTSL---------------------------------- 143

Query: 61  SRSTRENLAAYLLYPFLHGSARSSSPASP-FPLSPF--YRPKQGRMEYSQVVRHRFLVPA 119
               RENLAAYLLYP +   AR  S   P F L PF     K GRMEYSQVVRHRFLVPA
Sbjct: 144 ----RENLAAYLLYPRV--LARLGSFFEPCFSLLPFPVLPSKTGRMEYSQVVRHRFLVPA 165

[Close]

BLAST of MC07g0230 vs. ExPASy TrEMBL
Match: A0A0D2LZI2 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G168300 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.21e-16
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 76  FLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACK 119
           FLHGSARSSSPASPFPLSPF   K GRMEYSQVVRHRFLVPACK
Sbjct: 78  FLHGSARSSSPASPFPLSPFLPSKTGRMEYSQVVRHRFLVPACK 121

[Close]

BLAST of MC07g0230 vs. ExPASy TrEMBL
Match: A0A2G2ZHK4 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_04602 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.80e-16
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   MLTVTKVTYFRWTRSQRVQSNSVTSLRLQKRSPTLIGIALQANRTE 46
           MLTVTKVT FRWTRSQRV+SNSVTSLRLQK SPTLIGIALQANR E
Sbjct: 72  MLTVTKVTDFRWTRSQRVRSNSVTSLRLQKPSPTLIGIALQANRAE 117

[Close]

BLAST of MC07g0230 vs. ExPASy TrEMBL
Match: A0A5J5WF54 (Uncharacterized protein (Fragment) OS=Gossypium barbadense OX=3634 GN=ES319_A03G096000v1 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.12e-15
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 76  FLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACK 119
           FLHGSARSS+PASPFPLSPF   K GRMEYSQVVRH+F VPACK
Sbjct: 73  FLHGSARSSTPASPFPLSPFLLSKTGRMEYSQVVRHQFFVPACK 116

[Close]

BLAST of MC07g0230 vs. ExPASy TrEMBL
Match: A0A5D2H581 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G106700v1 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.15e-15
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 76  FLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACK 119
           FLHGSARSS+PASPFPLSPF   K GRMEYSQVVRH+F VPACK
Sbjct: 73  FLHGSARSSTPASPFPLSPFLLSKTGRMEYSQVVRHQFFVPACK 116

The following BLAST results are available for this feature:

BLAST of MC07g0230 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g0230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG2247429.1	1.26e-26	58.33	hypothetical protein Bca52824_087057 [Brassica carinata]	[more]
KAG2308121.1	2.48e-25	58.33	hypothetical protein Bca52824_027869 [Brassica carinata]	[more]
CAN65992.1	1.08e-17	52.46	hypothetical protein VITISV_042149 [Vitis vinifera]	[more]
KJB09807.1	2.49e-16	90.91	hypothetical protein B456_001G168300, partial [Gossypium raimondii]	[more]
PHT81424.1	5.78e-16	91.30	hypothetical protein T459_14439 [Capsicum annuum] >PHT89489.1 hypothetical prote...	[more]

BLAST of MC07g0230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5BTN0	5.24e-18	52.46	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042149 PE=4 SV=1	[more]
A0A0D2LZI2	1.21e-16	90.91	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G1...	[more]
A0A2G2ZHK4	2.80e-16	91.30	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_04602 PE=4 SV=1	[more]
A0A5J5WF54	1.12e-15	84.09	Uncharacterized protein (Fragment) OS=Gossypium barbadense OX=3634 GN=ES319_A03G...	[more]
A0A5D2H581	1.15e-15	84.09	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G106700v1 PE=...	[more]

BLAST of MC07g0230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0230.1	MC07g0230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0004252	serine-type endopeptidase activity