MC07g0225 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC07g0225
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationMC07: 6831374 .. 6831738 (-)
RNA-Seq ExpressionMC07g0225
SyntenyMC07g0225
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCTTATCTTCACCTGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCAGATCTCAATCTAGCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCCTTCGGGCAATACGGCTTTCATAATACGCGAAGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTAACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGCGAGACGGCCCA

mRNA sequence

TTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCTTATCTTCACCTGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCAGATCTCAATCTAGCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAATACGGCTTTCATAATACGCGAAGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTAACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGCGAGACGGCCCA

Coding sequence (CDS)

TTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCTTATCTTCACCTGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCAGATCTCAATCTAGCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAATACGGCTTTCATAATACGCGAAGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTAACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGCGAGACGGCCCA

Protein sequence

FNWLKRTAHNGYIVGSSPTKPTTPYLHLIQGSRSPRHPADLNLATWNHTAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDGP
Homology
BLAST of MC07g0225 vs. NCBI nr
Match: KAG6590352.1 (hypothetical protein SDJN03_15775, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 4.59e-22
Identity = 63/98 (64.29%), Postives = 68/98 (69.39%), Query Frame = 0

Query: 28  LIQGSRSPRHPADLNLATWNHTAAAALWARLLRLPLTYALAACP------GNTAFIIREA 87
           LI  S SP     LNLAT NHTAAAALWARLL LPLT ALAACP      G   F    +
Sbjct: 83  LISKSPSPY----LNLATCNHTAAAALWARLLGLPLTSALAACPLPSPSFGEYGFHNTGS 142

Query: 88  AERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDG 119
           ++ + +I  LYS DSEGVVET RESRCEGSDRRSSRDG
Sbjct: 143 SD-SYSIAMLYSFDSEGVVETLRESRCEGSDRRSSRDG 175

BLAST of MC07g0225 vs. NCBI nr
Match: KAG6585891.1 (hypothetical protein SDJN03_18624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 1.68e-20
Identity = 61/127 (48.03%), Postives = 73/127 (57.48%), Query Frame = 0

Query: 3   WLKRTAHN---GYIVGSSPTKPTTPYLHLIQGSRSPRHPADLNLATWNHTAAAALWARLL 62
           WL  +      G +     +K  +PYL               N+AT NH AAAALWARLL
Sbjct: 44  WLNESKEERVVGQLYAQGQSKSPSPYL---------------NVATCNHRAAAALWARLL 103

Query: 63  RLPLTYALAACP------GNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR 120
            LPLT ALAACP      G  +F    +++ + +I  LYS D+EGVVET RESRCEGSDR
Sbjct: 104 GLPLTSALAACPLPSPSFGEYSFHNTRSSD-SYSIAMLYSFDNEGVVETLRESRCEGSDR 154

BLAST of MC07g0225 vs. NCBI nr
Match: KAG6573513.1 (hypothetical protein SDJN03_27400, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 6.36e-14
Identity = 51/102 (50.00%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 16  SSPTKPTTPYLHLIQGSRSPRHPADLNLATWNHTAAAALWARLLRLPLTYALAACP---- 75
           ++P +    +LH       P     LNLAT NHT AAALWA LL LPLT ALAACP    
Sbjct: 28  NAPPRSKLSFLHTTDSQSKPPS-LYLNLATCNHTVAAALWACLLGLPLTSALAACPLPSP 87

Query: 76  --GNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGS 111
             G   F    +++ + +I  LYS DSEGVVET RESRCE S
Sbjct: 88  SFGEYDFHNTGSSD-SYSIAMLYSFDSEGVVETLRESRCEVS 127

BLAST of MC07g0225 vs. NCBI nr
Match: KAA0064098.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.73e-11
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 49  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRC 108
           T  AALW+ LL LPLTYALAACP  T  II EAAER   +     CD EGV+ET R+SRC
Sbjct: 6   TTQAALWSCLLHLPLTYALAACPDKTIIIIGEAAER---LDQRGICDKEGVIETERKSRC 65

Query: 109 EGSDR 113
           E + R
Sbjct: 66  EAATR 67

BLAST of MC07g0225 vs. NCBI nr
Match: KAA0042227.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.84e-11
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 49  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRC 108
           T  AALW+ LL LPLTYALAACP  T  IIREAAE    +     CD EGV+ET R+SRC
Sbjct: 6   TTQAALWSCLLHLPLTYALAACPDKTIIIIREAAEW---LDQRGICDKEGVIETERKSRC 65

Query: 109 EGSDR 113
           E + R
Sbjct: 66  EAATR 67

BLAST of MC07g0225 vs. ExPASy TrEMBL
Match: A0A5A7V903 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2613G00020 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.32e-11
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 49  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRC 108
           T  AALW+ LL LPLTYALAACP  T  II EAAER   +     CD EGV+ET R+SRC
Sbjct: 6   TTQAALWSCLLHLPLTYALAACPDKTIIIIGEAAER---LDQRGICDKEGVIETERKSRC 65

Query: 109 EGSDR 113
           E + R
Sbjct: 66  EAATR 67

BLAST of MC07g0225 vs. ExPASy TrEMBL
Match: A0A5A7TKL6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold129G00170 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.86e-11
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 49  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRC 108
           T  AALW+ LL LPLTYALAACP  T  IIREAAE    +     CD EGV+ET R+SRC
Sbjct: 6   TTQAALWSCLLHLPLTYALAACPDKTIIIIREAAEW---LDQRGICDKEGVIETERKSRC 65

Query: 109 EGSDR 113
           E + R
Sbjct: 66  EAATR 67

BLAST of MC07g0225 vs. ExPASy TrEMBL
Match: A0A5A7URS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold967G00180 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.62e-10
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 49  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRC 108
           T  AALW+ LL LPLTYAL AC   T  IIREAAER   +     CD EGV+ET R+SRC
Sbjct: 6   TTQAALWSCLLHLPLTYALVACLDKTIIIIREAAER---LDQRGICDREGVIETERKSRC 65

Query: 109 EGSDR 113
           E + R
Sbjct: 66  EAATR 67

BLAST of MC07g0225 vs. ExPASy TrEMBL
Match: A0A0D2PZN2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G162300 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.25e-05
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 45   TWNHTAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEG 98
            TWNHTAAAAL A LLRLP+TYALAA               +IA+RSLYS D EG
Sbjct: 1035 TWNHTAAAALRAHLLRLPVTYALAA---------------SIALRSLYSRDGEG 1073

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590352.14.59e-2264.29hypothetical protein SDJN03_15775, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585891.11.68e-2048.03hypothetical protein SDJN03_18624, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573513.16.36e-1450.00hypothetical protein SDJN03_27400, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064098.12.73e-1160.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0042227.13.84e-1160.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
A0A5A7V9031.32e-1160.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TKL61.86e-1160.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7URS51.62e-1058.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0D2PZN26.25e-0559.26Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G162300 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC07g0225.1MC07g0225.1mRNA