MC07g0090 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0090
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription factor, MADS-box
Location	MC07: 1636487 .. 1636633 (+)
RNA-Seq Expression	MC07g0090
Synteny	MC07g0090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCGAGCGACAATTCGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTTGCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCGTGGTCGCCTCTACGAGTTTTACAGTGGAAATAGGTAC

mRNA sequence

TGCGAGCGACAATTCGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTTGCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCGTGGTCGCCTCTACGAGTTTTACAGTGGAAATAGGTAC

Coding sequence (CDS)

TGCGAGCGACAATTCGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTTGCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCGTGGTCGCCTCTACGAGTTTTACAGTGGAAATAGGTAC

Protein sequence

CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY

Homology

[Close]

BLAST of MC07g0090 vs. ExPASy Swiss-Prot
Match: Q38694 (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.0e-06
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYS 46
          RQ    +RR RL+KKA +L +LCD  + L+IF+NRG+LYEF S
Sbjct: 17 RQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59

[Close]

BLAST of MC07g0090 vs. ExPASy Swiss-Prot
Match: Q9SAR1 (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS8 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.0e-06
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSG 47
          RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF SG
Sbjct: 17 RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]

BLAST of MC07g0090 vs. ExPASy Swiss-Prot
Match: Q6Z6W2 (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS57 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 6.5e-06
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  +GLV+F++ GRLYEF S N
Sbjct: 17 RQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN 61

[Close]

BLAST of MC07g0090 vs. ExPASy Swiss-Prot
Match: Q9FIS1 (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.5e-06
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Sbjct: 17 RQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSSD 61

[Close]

BLAST of MC07g0090 vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-05
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF S +
Sbjct: 17 RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61

[Close]

BLAST of MC07g0090 vs. NCBI nr
Match: KAG7014654.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.1 bits (144), Expect = 2.45e-10
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR 48
          C R     +RR+ L+KKA +L +LCD  +GLVIF NRGRLYEF SGNR
Sbjct: 15 CNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR 62

[Close]

BLAST of MC07g0090 vs. NCBI nr
Match: KAG6576135.1 (Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 2.57e-10
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR 48
          C R     +RR+ L+KKA +L +LCD  +GLVIF NRGRLYEF SGNR
Sbjct: 15 CNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR 62

[Close]

BLAST of MC07g0090 vs. NCBI nr
Match: KAF5751047.1 (hypothetical protein HS088_TW02G00057 [Tripterygium wilfordii])

HSP 1 Score: 59.7 bits (143), Expect = 5.94e-10
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY 49
          RQ    +RR+ L+KKAC+L +LCD  + L+IF+NRG+LYEF SG+RY
Sbjct: 17 RQVTFAKRRNGLLKKACELSVLCDAEIALIIFSNRGKLYEFSSGSRY 63

[Close]

BLAST of MC07g0090 vs. NCBI nr
Match: KAG6592961.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025372.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 6.85e-10
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR 48
          C R     +RRS L+KKA +L +LCD  +GLV+F NRGRLYEF SG+R
Sbjct: 15 CNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDR 62

[Close]

BLAST of MC07g0090 vs. NCBI nr
Match: XP_023514717.1 (MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 1.11e-08
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 1  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 47
          C R     +RR+ L+KKA +L +LCD  +GLVIF NRGRLYEF SGN
Sbjct: 15 CNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN 61

[Close]

BLAST of MC07g0090 vs. ExPASy TrEMBL
Match: A0A7J7DXK3 (MADS-box domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00057 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.88e-10
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY 49
          RQ    +RR+ L+KKAC+L +LCD  + L+IF+NRG+LYEF SG+RY
Sbjct: 17 RQVTFAKRRNGLLKKACELSVLCDAEIALIIFSNRGKLYEFSSGSRY 63

[Close]

BLAST of MC07g0090 vs. ExPASy TrEMBL
Match: A0A438JDD9 (MADS-box protein J2 OS=Vitis vinifera OX=29760 GN=J2_1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.37e-09
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY 49
          RQ    +RRS ++KKA +L +LCD  L L+IF+ RGRLYEF SGNR+
Sbjct: 17 RQVTFSKRRSGMMKKAHELSILCDVDLALIIFSARGRLYEFCSGNRF 63

[Close]

BLAST of MC07g0090 vs. ExPASy TrEMBL
Match: F6H467 (MADS-box domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0068g01800 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.75e-09
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR 48
          RQ    +RRS ++KKA +L +LCD  L L+IF+ RGRLYEF SGNR
Sbjct: 17 RQVTFSKRRSGMMKKAHELSILCDVDLALIIFSARGRLYEFCSGNR 62

[Close]

BLAST of MC07g0090 vs. ExPASy TrEMBL
Match: A0A2I0IFZ9 (MADS-box domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_037337 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.46e-09
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR 48
          RQ    +RRS L+KKA +L +LCD  + L++F++RGRLYEF SGNR
Sbjct: 17 RQVTFSKRRSGLIKKARELSILCDVEVALLVFSSRGRLYEFCSGNR 62

[Close]

BLAST of MC07g0090 vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.03e-08
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 1  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 47
          C R     +RRS L+KKA +L +LCD  +GLVIF NRGRLYEF SG+
Sbjct: 15 CNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGD 61

[Close]

BLAST of MC07g0090 vs. TAIR 10
Match: AT3G58780.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY 50
          RQ    +RR+ L+KKA +L +LCD  + LVIF+ RGRLYE Y+ NRY
Sbjct: 32 RQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYE-YANNRY 77

[Close]

BLAST of MC07g0090 vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Sbjct: 17 RQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSSD 61

[Close]

BLAST of MC07g0090 vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Sbjct: 17 RQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSSD 61

[Close]

BLAST of MC07g0090 vs. TAIR 10
Match: AT5G62165.3 (AGAMOUS-like 42 )

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Sbjct: 17 RQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSSD 61

[Close]

BLAST of MC07g0090 vs. TAIR 10
Match: AT5G62165.4 (AGAMOUS-like 42 )

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN 48
          RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Sbjct: 17 RQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSSD 61

The following BLAST results are available for this feature:

BLAST of MC07g0090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38694	5.0e-06	55.81	Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1	[more]
Q9SAR1	5.0e-06	54.55	MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
Q6Z6W2	6.5e-06	53.33	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q9FIS1	8.5e-06	53.33	MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1	[more]
Q03489	1.4e-05	51.11	Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE...	[more]

BLAST of MC07g0090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014654.1	2.45e-10	60.42	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6576135.1	2.57e-10	60.42	Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAF5751047.1	5.94e-10	57.45	hypothetical protein HS088_TW02G00057 [Tripterygium wilfordii]	[more]
KAG6592961.1	6.85e-10	58.33	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023514717.1	1.11e-08	59.57	MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC07g0090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7DXK3	2.88e-10	57.45	MADS-box domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_...	[more]
A0A438JDD9	6.37e-09	57.45	MADS-box protein J2 OS=Vitis vinifera OX=29760 GN=J2_1 PE=4 SV=1	[more]
F6H467	6.75e-09	58.70	MADS-box domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0068g018...	[more]
A0A2I0IFZ9	9.46e-09	56.52	MADS-box domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_037337 P...	[more]
A0A6J1KPU7	1.03e-08	59.57	MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4...	[more]

BLAST of MC07g0090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58780.2	6.0e-07	55.32	K-box region and MADS-box transcription factor family protein	[more]
AT5G62165.1	6.0e-07	53.33	AGAMOUS-like 42	[more]
AT5G62165.2	6.0e-07	53.33	AGAMOUS-like 42	[more]
AT5G62165.3	6.0e-07	53.33	AGAMOUS-like 42	[more]
AT5G62165.4	6.0e-07	53.33	AGAMOUS-like 42	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 9..24 score: 47.32 coord: 24..45 score: 45.24
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 9..43 e-value: 8.7E-8 score: 31.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..47 score: 14.493071
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 2..48 e-value: 3.2E-8 score: 35.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0090.1	MC07g0090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding