MC07g0056 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0056
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription factor, MADS-box
Location	MC07: 733753 .. 733933 (-)
RNA-Seq Expression	MC07g0056
Synteny	MC07g0056

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTGCGGAGGAGAAAATGGGACGGAACTAGATCGATGTGAAGAGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACCTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTCGCGATCTCTGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTATTG

mRNA sequence

GACTGCGGAGGAGAAAATGGGACGGAACTAGATCGATGTGAAGAGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACCTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTCGCGATCTCGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTATTG

Coding sequence (CDS)

GACTGCGGAGGAGAAAATGGGACGGAACTAGATCGATGTGAAGAGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACCTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTCGCGATCTCGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTATTG

Protein sequence

DCGGENGTELDRCEENRIEDSCNRYVTFCKRRSGIIKKARDLVLCDVELRLVVFTNRGVL

Homology

[Close]

BLAST of MC07g0056 vs. ExPASy Swiss-Prot
Match: Q40168 (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-09
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ LVVF+NRG L
Sbjct: 21 KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRL 70

[Close]

BLAST of MC07g0056 vs. ExPASy Swiss-Prot
Match: Q2V0P1 (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS58 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-09
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 3  GGENGTELDRCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          G E      + E  RIE++ NR VTFCKRRSG++KKA +L VLCD E+ LVVF++RG L
Sbjct: 38 GAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRL 96

[Close]

BLAST of MC07g0056 vs. ExPASy Swiss-Prot
Match: Q38836 (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-08
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Sbjct: 5  KIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MC07g0056 vs. ExPASy Swiss-Prot
Match: F6I457 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-08
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 59
          + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ L+VF++RG
Sbjct: 5  KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 52

[Close]

BLAST of MC07g0056 vs. ExPASy Swiss-Prot
Match: A0A217EJJ0 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-08
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 59
          + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ L+VF++RG
Sbjct: 5  KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 52

[Close]

BLAST of MC07g0056 vs. NCBI nr
Match: KAG6592961.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025372.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 7.45e-17
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIED CNR+VTFCKRRSG+IKKAR+L VLCDVE+ LVVFTNRG
Sbjct: 5  KIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRG 52

[Close]

BLAST of MC07g0056 vs. NCBI nr
Match: KAG7014654.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 2.19e-16
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIED CNR+VTFCKRR+G+IKKAR+L VLCDVE+ LV+FTNRG
Sbjct: 5  KIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRG 52

[Close]

BLAST of MC07g0056 vs. NCBI nr
Match: KAG6576135.1 (Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 2.31e-16
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIED CNR+VTFCKRR+G+IKKAR+L VLCDVE+ LV+FTNRG
Sbjct: 5  KIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRG 52

[Close]

BLAST of MC07g0056 vs. NCBI nr
Match: XP_022155417.1 (MADS-box transcription factor 8-like isoform X3 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 2.86e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Sbjct: 44 KIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRG 91

[Close]

BLAST of MC07g0056 vs. NCBI nr
Match: XP_022155416.1 (MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 6.01e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Sbjct: 44 KIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRG 91

[Close]

BLAST of MC07g0056 vs. ExPASy TrEMBL
Match: A0A6J1DPA0 (MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.38e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Sbjct: 44 KIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRG 91

[Close]

BLAST of MC07g0056 vs. ExPASy TrEMBL
Match: A0A6J1DRL9 (MADS-box protein FLOWERING LOCUS C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.91e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Sbjct: 44 KIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRG 91

[Close]

BLAST of MC07g0056 vs. ExPASy TrEMBL
Match: A0A6J1DME3 (MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.95e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Sbjct: 44 KIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRG 91

[Close]

BLAST of MC07g0056 vs. ExPASy TrEMBL
Match: A0A6J1H7I9 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111460798 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.25e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIED CNR+VTFCKRRSG+IKKAR+L VLCDVE+ LVVFTNRG
Sbjct: 5  KIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRG 52

[Close]

BLAST of MC07g0056 vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.75e-16
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG 58
          + E  RIED CNR+VTFCKRRSG+IKKAR+L VLCDVE+ LV+FTNRG
Sbjct: 5  KIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRG 52

[Close]

BLAST of MC07g0056 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-10
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Sbjct: 5  KIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MC07g0056 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-10
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Sbjct: 5  KIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MC07g0056 vs. TAIR 10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-10
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Sbjct: 31 KIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 80

[Close]

BLAST of MC07g0056 vs. TAIR 10
Match: AT4G09960.4 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-10
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Sbjct: 5  KIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MC07g0056 vs. TAIR 10
Match: AT4G18960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 12 RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL 61
          + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ L+VF++RG L
Sbjct: 21 KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRL 70

The following BLAST results are available for this feature:

BLAST of MC07g0056 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40168	4.5e-09	62.00	Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1	[more]
Q2V0P1	7.7e-09	55.93	MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38836	1.3e-08	60.00	Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=...	[more]
F6I457	1.7e-08	58.33	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=...	[more]
A0A217EJJ0	1.7e-08	58.33	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=...	[more]

BLAST of MC07g0056 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592961.1	7.45e-17	77.08	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. soror...	[more]
KAG7014654.1	2.19e-16	72.92	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6576135.1	2.31e-16	72.92	Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022155417.1	2.86e-16	77.08	MADS-box transcription factor 8-like isoform X3 [Momordica charantia]	[more]
XP_022155416.1	6.01e-16	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]	[more]

BLAST of MC07g0056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPA0	1.38e-16	77.08	MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRL9	2.91e-16	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X2 OS=Momordica charantia OX=367...	[more]
A0A6J1DME3	2.95e-16	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=367...	[more]
A0A6J1H7I9	4.25e-16	77.08	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KPU7	5.75e-16	75.00	MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4...	[more]

BLAST of MC07g0056 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09960.2	9.3e-10	60.00	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.1	9.3e-10	60.00	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	9.3e-10	60.00	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.4	9.3e-10	60.00	K-box region and MADS-box transcription factor family protein	[more]
AT4G18960.1	1.6e-09	58.00	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 10..30 score: 44.24 coord: 44..60 score: 36.08
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 3..60 e-value: 1.4E-6 score: 37.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 17..58 e-value: 1.8E-14 score: 53.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 12..60 score: 17.058329
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 20..60 e-value: 6.1E-11 score: 43.9
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 12..59
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 12..58
None	No IPR available	PANTHER	PTHR48019:SF72	MADS-BOX TRANSCRIPTION FACTOR 6	coord: 12..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0056.1	MC07g0056.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding