MC07g0013 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0013
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Short-chain dehydrogenase TIC 32
Location	MC07: 175736 .. 175840 (+)
RNA-Seq Expression	MC07g0013
Synteny	MC07g0013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCGGAAGAAGTCGCAGAAGGGATCGATGGGAATGGCCTCACTGCTATTATTACA

mRNA sequence

ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCGGAAGAAGTCGCAGAAGGGATCGATGGGAATGGCCTCACTGCTATTATTACA

Coding sequence (CDS)

ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCGGAAGAAGTCGCAGAAGGGATCGATGGGAATGGCCTCACTGCTATTATTACA

Protein sequence

MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT

Homology

[Close]

BLAST of MC07g0013 vs. ExPASy Swiss-Prot
Match: A2RVM0 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-08
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+T
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. ExPASy Swiss-Prot
Match: Q6RVV4 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 4.4e-04
Identity = 23/36 (63.89%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 1  MWIF-GWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW F   KG SGFS  STAE+V  GID  GLTAI+T
Sbjct: 1  MWPFSSKKGVSGFSGSSTAEQVTHGIDATGLTAIVT 36

[Close]

BLAST of MC07g0013 vs. NCBI nr
Match: XP_022136624.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 3.66e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. NCBI nr
Match: KAA0044830.1 (short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 3.66e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. NCBI nr
Match: XP_004146522.1 (short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus] >KGN53338.1 hypothetical protein Csa_014842 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 3.66e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. NCBI nr
Match: XP_008452031.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo] >TYK16634.1 short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 3.66e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. NCBI nr
Match: XP_038884091.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 3.66e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. ExPASy TrEMBL
Match: A0A5A7TNQ8 (Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001220 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.77e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. ExPASy TrEMBL
Match: A0A5D3D084 (Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004620 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.77e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. ExPASy TrEMBL
Match: A0A0A0KUV5 (Short-chain dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_4G047990 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.77e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. ExPASy TrEMBL
Match: A0A6J1C4U8 (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111008286 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.77e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. ExPASy TrEMBL
Match: A0A1S3BU18 (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103493161 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.77e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 35
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+T
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. TAIR 10
Match: AT4G11410.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-10
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW F WKG SGFSARSTAEEV  GIDG GLTAI+T
Sbjct: 1  MWPFWWKGASGFSARSTAEEVTHGIDGTGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. TAIR 10
Match: AT4G23420.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-09
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+T
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. TAIR 10
Match: AT4G23430.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-09
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+T
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. TAIR 10
Match: AT4G23420.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-09
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+T
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVT 35

[Close]

BLAST of MC07g0013 vs. TAIR 10
Match: AT4G23430.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-09
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIIT 36
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+T
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVT 35

The following BLAST results are available for this feature:

BLAST of MC07g0013 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVM0	2.2e-08	74.29	Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6RVV4	4.4e-04	63.89	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]

BLAST of MC07g0013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136624.1	3.66e-14	94.29	short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia]	[more]
KAA0044830.1	3.66e-14	94.29	short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa]	[more]
XP_004146522.1	3.66e-14	94.29	short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus] >KGN53338.1 hy...	[more]
XP_008452031.1	3.66e-14	94.29	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo] >...	[more]
XP_038884091.1	3.66e-14	94.29	short-chain dehydrogenase TIC 32, chloroplastic-like [Benincasa hispida]	[more]

BLAST of MC07g0013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNQ8	1.77e-14	94.29	Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3D084	1.77e-14	94.29	Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KUV5	1.77e-14	94.29	Short-chain dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_4G047990 PE=4 SV=1	[more]
A0A6J1C4U8	1.77e-14	94.29	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Momordica charantia OX=3...	[more]
A0A1S3BU18	1.77e-14	94.29	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of MC07g0013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11410.1	2.4e-10	80.00	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23420.1	1.6e-09	74.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.1	1.6e-09	74.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23420.2	1.6e-09	74.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.2	1.6e-09	74.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0013.1	MC07g0013.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity