MC06g_new0563 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0563
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 27561642 .. 27562904 (+)
RNA-Seq Expression	MC06g_new0563
Synteny	MC06g_new0563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTTTATATGGTTGTGCCTCTTCGAAAGGCCAAGCAGAGTGTGGCTCACACGATAACATCGTCCCTTCTCAACGTCAAGGGAGTGGGCCCGGCCATGCATCTCTTATCCGCGTCAAGCAAATGCAGCCCATGCAGTCGCGTTTGCTTGATGCGGATAAGAGATGTGCGGTTGGGTTTGCTCCTTTGGCGTTGAGAAGTCGTGCCGCCCCTTATCCACGGCAAGGAGCACGGCTTCCGCAACCGCGCTATCCTTTCCCACGCTAAGCGAATGCAACTCTCATACTACCTTGTGCCCACCGCGGTCACCCTGTACGACAGCCCATCACCCTACTCACATTCCCCGTGGTGTATAAAGTCTGGGAAACTTGCCTTCGATGCCACCCATTCTTTACTTACGCGGAGAAGAAGTTCCAGCACTTGTATAATACAAGGGGTCCAAGTCTTCCCAAGGAGATAAAAGGAGATTGAAAAATGATATGATAAAATTCTATACAACTAAATATACTCTCCTCTCTTCTCTCCCTATGCTCCCTGACTAACTTTAGCACCCGTTGTGCCGCCACGCCACGCAGGCTTTAGCTCACCTTCCTTTTTACTGGTCATCTTTGATCCAGTCATTCAAGTTAAGGATCCAACTTTCCCTTATTCACAATTCGTCAAGGTCCAATTTGGACCACTCTGGTTTGATTGGCCTCTCCAAATCACGTTCTAACAGTTTTTTTAATATAAACTAAAGAGAATTTTAAAATATTAAGGGGGGAAACCTAAAAGATGGATGGGATGTATTTAAAAATTAAAACCACACAAAAATCAAAATATACCATAATCTATCTATCCATTTAGGTTAAAATCACCTTTGGAAGCACTTCTGGAAACTTGTGAAACGAGGTCGGCCACCTTGGCTCGCCGGAGATTCTGGTTAGCGTCCAAAATCCTTCCGGCGAACAGCTGGGTATTGCAAATTCGTCGGAGTTTTCGCCAGACGGGCGAAACCGGAAGCCATGGGAGACCCAGAACTTCGTGGTTGTAAGTGGTAATGGAGTCGGGAACTGTTCTGCAGGACAGAAACTGGTCGTGGGTTTGGAGAACTTCCTTGGCCATGGCGGCGGAGGAGACTACGACGGTGGTGACTCGGCCGAGTTTCAAGGTCATAATAGGGCCATGAGATTTGGCCAGATTGGCCAGAGACCTGTGGGGCTTGTCGCCGAGATCCAGAAGGTTTCCGATCACCGGCAAAGGTCTGGGTCCGGGAGGTAG

mRNA sequence

ATGCACAGTTTATATGGTTGTGCCTCTTCGAAAGGCCAAGCAGAGTGTGGCTCACACGATAACATCGTCCCTTCTCAACGTCAAGGGAGTGGGCCCGGCCATGCATCTCTTATCCGCGTCAAGCAAATGCAGCCCATGCAGTCGCGTTTGCTTGATGCGGATAAGAGATGTGCGCTGGGTATTGCAAATTCGTCGGAGTTTTCGCCAGACGGGCGAAACCGGAAGCCATGGGAGACCCAGAACTTCGTGGTTGTAAGTGGTAATGGAGTCGGGAACTGTTCTGCAGGACAGAAACTGGTCGTGGGTTTGGAGAACTTCCTTGGCCATGGCGGCGGAGGAGACTACGACGGTGGTGACTCGGCCGAGTTTCAAGGTCATAATAGGGCCATGAGATTTGGCCAGATTGGCCAGAGACCTGTGGGGCTTGTCGCCGAGATCCAGAAGGTTTCCGATCACCGGCAAAGGTCTGGGTCCGGGAGGTAG

Coding sequence (CDS)

ATGCACAGTTTATATGGTTGTGCCTCTTCGAAAGGCCAAGCAGAGTGTGGCTCACACGATAACATCGTCCCTTCTCAACGTCAAGGGAGTGGGCCCGGCCATGCATCTCTTATCCGCGTCAAGCAAATGCAGCCCATGCAGTCGCGTTTGCTTGATGCGGATAAGAGATGTGCGCTGGGTATTGCAAATTCGTCGGAGTTTTCGCCAGACGGGCGAAACCGGAAGCCATGGGAGACCCAGAACTTCGTGGTTGTAAGTGGTAATGGAGTCGGGAACTGTTCTGCAGGACAGAAACTGGTCGTGGGTTTGGAGAACTTCCTTGGCCATGGCGGCGGAGGAGACTACGACGGTGGTGACTCGGCCGAGTTTCAAGGTCATAATAGGGCCATGAGATTTGGCCAGATTGGCCAGAGACCTGTGGGGCTTGTCGCCGAGATCCAGAAGGTTTCCGATCACCGGCAAAGGTCTGGGTCCGGGAGGTAG

Protein sequence

MHSLYGCASSKGQAECGSHDNIVPSQRQGSGPGHASLIRVKQMQPMQSRLLDADKRCALGIANSSEFSPDGRNRKPWETQNFVVVSGNGVGNCSAGQKLVVGLENFLGHGGGGDYDGGDSAEFQGHNRAMRFGQIGQRPVGLVAEIQKVSDHRQRSGSGR

Homology

[Close]

BLAST of MC06g_new0563 vs. ExPASy TrEMBL
Match: A0A5K0WT83 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS4487 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.15e-07
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 59  LGIANSSEFSPDGRNRKPWETQNFVVVSGNGVGNCSAGQKLVVGLENFLGHGGGGDYDGG 118
           LG+A+ S+ SP        +    VV   +GV + SA ++LVV +E+  GH    D+ GG
Sbjct: 7   LGVADPSQLSPSFSVLTKHQRVVVVVQHLDGVSDGSARKRLVVLMEHLFGHLSRRDHHGG 66

Query: 119 DSAEFQGHNRAMRFGQIGQRPVGLVAEIQKVSDHR 153
           D +E Q H R M+  +  +R +G  AE +K  DHR
Sbjct: 67  DESELQRHERTMQLRESSERLIGHAAEFEKGPDHR 101

[Close]

BLAST of MC06g_new0563 vs. ExPASy TrEMBL
Match: A0A5K0WTV2 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS4490 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.88e-05
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 94  SAGQKLVVGLENFLGHGGGGDYDGGDSAEFQGHNRAMRFGQIGQRPVGLVAEIQKVSDHR 153
           SAG+ +VV +EN  GH   GD  GG   E +GH R ++ G+ GQR VG V ++++ + HR
Sbjct: 32  SAGESVVVRVENLSGHLRRGDNHGGSETEPEGHQRPVQLGEPGQRLVGHVPKLEERAHHR 91

The following BLAST results are available for this feature:

BLAST of MC06g_new0563 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0563 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K0WT83	1.15e-07	36.84	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS44...	[more]
A0A5K0WTV2	5.88e-05	43.33	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS44...	[more]

BLAST of MC06g_new0563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g_new0563.1	MC06g_new0563.1	mRNA