MC06g_new0525 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0525
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCLAVATA3/ESR-RELATED 41
LocationMC06: 24815674 .. 24816974 (-)
RNA-Seq ExpressionMC06g_new0525
SyntenyMC06g_new0525
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGAAACAAGCTTGTTCTCACCACCATTAAGTGTTTAACAATTAAGATAGAGAAATGCAAAAACATAGGCTTGAGTTGCCAAATTTTCTGTCCTTAAATCAAGGATTTTCAATATTATATTTCTTGAAATGTTTTTTTTATTATTAAAATATATTATAATTATGCCGTCAATAAATCATTAAAAAAAACGTAAAGGAAAAAATAAAAGTTGTAAGAAGAAAAAGACATTGGAGGGGATGATCATAGGACCACTGACGGCGAAGAACAGGAGGAGTTAATGGTAATTTTAATCGAGTCCGTTCCGTTCCCCCATTTCAGCACCTTTCATTTTTCAATCTCCCCACGTCAAGTTAGCTTTGTTTCTCAGACAAAATTTAATGTGTATCGAATTTCAAATCTTCTTCGCTTTTCACTTTTCACTTTGCCATTTCTCTCTCCAATGGCTATTTGAACCTTCCGAATTCTTCAGAACGCGTTATCTTCCCCTGAATTTGCATGGCAGCAACAAGAATTTCCAGATCGCGAAGCTCTGAATTCCACAAACGCCAACATTCTCCTCCTCAATCTCTCCTAACTTCATCTCTAACGCTTCTCTTCATCTTCCTTTTCCTCTTCCTTTCCGCCGCCGCCGCCGTGCCGAGCAGCTCTTCCATGGCTTCCTTGGAGCCGCAGAGGCGTCTGGTCGAACATTCCTCGAGCAATCCGCCGAGGAAACAGAGGTCGGACTCGGAATCGAAATCGCTCCGGCGGCGGAGAGACGATCGTCGATTTGAATCGGCGGCTCACGAAGTTCCGAGCGGTCCGAATCCGATATCGAACTAGGCATCGCCGATTTCCGGAGAGGAAGGTGCAGTTTGAGCAGAGATGTGGAAGTATTTTTGTAAATTAACGGCGGCGGAGGTTATGGATTGCACTGATTTTTCGTCTTCGTGTGGGATTCTGATTAACGATTGAGTTCGCCATTAAAGCTACACTGCTGCATCTTCCTTTTTTTTCTCATCCCCCTCTTTTTTGTGGTTTTTGTTTCGCTCTTCATATGTAAACATATACAGAATTACAATCGCATGAATATATACTATAGATTGCGAGGAGAAATTCTTGTGTTGGTTTAGAAGCGAAGAACAATCTCTGAGTTTACGAATAGAGATATCAATGTTGTGAAAATTTTGTTTAATTTGGTTAATCTGGTTGTATATCCTTAACATTTTAGAGTGGGGATTCAACTCTCTAAATTTGAGGAGTGGTCATGATATCTTAACTCCAAGTTTAGTTATTTGGTATAAAATTTTTTAGAAAATAG

mRNA sequence

ATGGCAGCAACAAGAATTTCCAGATCGCGAAGCTCTGAATTCCACAAACGCCAACATTCTCCTCCTCAATCTCTCCTAACTTCATCTCTAACGCTTCTCTTCATCTTCCTTTTCCTCTTCCTTTCCGCCGCCGCCGCCGTGCCGAGCAGCTCTTCCATGGCTTCCTTGGAGCCGCAGAGGCGTCTGGTCGAACATTCCTCGAGCAATCCGCCGAGGAAACAGAGGTCGGACTCGGAATCGAAATCGCTCCGGCGGCGGAGAGACGATCGTCGATTTGAATCGGCGGCTCACGAAGTTCCGAGCGGTCCGAATCCGATATCGAACTAG

Coding sequence (CDS)

ATGGCAGCAACAAGAATTTCCAGATCGCGAAGCTCTGAATTCCACAAACGCCAACATTCTCCTCCTCAATCTCTCCTAACTTCATCTCTAACGCTTCTCTTCATCTTCCTTTTCCTCTTCCTTTCCGCCGCCGCCGCCGTGCCGAGCAGCTCTTCCATGGCTTCCTTGGAGCCGCAGAGGCGTCTGGTCGAACATTCCTCGAGCAATCCGCCGAGGAAACAGAGGTCGGACTCGGAATCGAAATCGCTCCGGCGGCGGAGAGACGATCGTCGATTTGAATCGGCGGCTCACGAAGTTCCGAGCGGTCCGAATCCGATATCGAACTAG

Protein sequence

MAATRISRSRSSEFHKRQHSPPQSLLTSSLTLLFIFLFLFLSAAAAVPSSSSMASLEPQRRLVEHSSSNPPRKQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN
Homology
BLAST of MC06g_new0525 vs. NCBI nr
Match: XP_022931103.1 (uncharacterized protein LOC111437389 [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 1.33e-09
Identity = 45/83 (54.22%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 26  LTSSLTLLFIFLFLFLSAAAAVPSSSSMASLEPQRRLVEHSSSNPPRKQRSDSESKSLRR 85
           L  SLTLLF+FL       A V  S SMA+ E Q RL+ HS +NPPRK R +SES   RR
Sbjct: 18  LIPSLTLLFVFL------TAVVLGSPSMAASESQTRLIPHSLNNPPRKHRLESESGG-RR 77

Query: 86  RRDDRRFESAAHEVPSGPNPISN 108
            RDDR  ESA  EV SG N + N
Sbjct: 78  PRDDRPLESAVFEVTSGTNHVLN 93

BLAST of MC06g_new0525 vs. NCBI nr
Match: KAA0068203.1 (hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK21123.1 hypothetical protein E5676_scaffold392G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 8.81e-08
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 54  ASLEPQRRLVEHSSSNPPRKQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
           A+L+       H+S+NPP KQ+ +SES   RRR +DR FESAAHEVPSGPNPISN
Sbjct: 186 AALKVPNNKKNHASNNPPLKQKPNSESGGWRRR-NDRLFESAAHEVPSGPNPISN 239

BLAST of MC06g_new0525 vs. NCBI nr
Match: KAE8650847.1 (hypothetical protein Csa_002136 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 7.93e-07
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 66  SSSNPPRKQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
           SS+NPPRK+R   ES S RRRR+D  FESAAHEVPSGPNPISN
Sbjct: 156 SSNNPPRKKRLKLES-SGRRRRNDHLFESAAHEVPSGPNPISN 197

BLAST of MC06g_new0525 vs. NCBI nr
Match: THG13816.1 (hypothetical protein TEA_014294 [Camellia sinensis var. sinensis])

HSP 1 Score: 54.7 bits (130), Expect = 9.80e-07
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 30  LTLLFIFLFLFLSAAAAVPSSSSMASLEPQRRLVEHSSSNP-------PRKQR----SDS 89
           L+LLFIFL L  S   +  + SSMAS  P RRL+  SSS+P       P+K +    S S
Sbjct: 42  LSLLFIFLILVHSEDPST-TPSSMASSIPTRRLLADSSSSPSSKMNFHPKKTQNSHTSSS 101

Query: 90  ESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
            S S RR      FE+ AHEVPSGPNPISN
Sbjct: 102 SSSSTRRE-----FEAGAHEVPSGPNPISN 125

BLAST of MC06g_new0525 vs. NCBI nr
Match: XP_021274504.1 (CLAVATA3/ESR (CLE)-related protein 41 [Herrania umbratica])

HSP 1 Score: 49.7 bits (117), Expect = 8.52e-05
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 19  HSPPQSLLTSSLTLLFIFLFLFLSAAAAVPS--SSSMASLEPQRRLVEHSSSNPPR---- 78
           ++ PQSLL   LTL FIFL L  S      S  SSS +S+  +RRL+  SS +       
Sbjct: 30  YAKPQSLLLF-LTLFFIFLLLIHSTNPLNSSNVSSSSSSIPFRRRLLATSSKSTSYSTNQ 89

Query: 79  ---KQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
              KQ S S S S   +   R F + AHEVPSGPNPISN
Sbjct: 90  FRPKQTSPSSSSSASSKPSRREFGAEAHEVPSGPNPISN 127

BLAST of MC06g_new0525 vs. ExPASy TrEMBL
Match: A0A6J1EXF7 (uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC111437389 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.44e-10
Identity = 45/83 (54.22%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 26  LTSSLTLLFIFLFLFLSAAAAVPSSSSMASLEPQRRLVEHSSSNPPRKQRSDSESKSLRR 85
           L  SLTLLF+FL       A V  S SMA+ E Q RL+ HS +NPPRK R +SES   RR
Sbjct: 18  LIPSLTLLFVFL------TAVVLGSPSMAASESQTRLIPHSLNNPPRKHRLESESGG-RR 77

Query: 86  RRDDRRFESAAHEVPSGPNPISN 108
            RDDR  ESA  EV SG N + N
Sbjct: 78  PRDDRPLESAVFEVTSGTNHVLN 93

BLAST of MC06g_new0525 vs. ExPASy TrEMBL
Match: A0A5D3DC24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001030 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.27e-08
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 54  ASLEPQRRLVEHSSSNPPRKQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
           A+L+       H+S+NPP KQ+ +SES   RRR +DR FESAAHEVPSGPNPISN
Sbjct: 186 AALKVPNNKKNHASNNPPLKQKPNSESGGWRRR-NDRLFESAAHEVPSGPNPISN 239

BLAST of MC06g_new0525 vs. ExPASy TrEMBL
Match: A0A0A0LE33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.55e-07
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 65  HSSSNPPRKQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
           H+S+NPP KQ+ +SES   RRRR+D  FESAAHEVPSGPNPISN
Sbjct: 195 HASNNPPLKQKPNSESGD-RRRRNDHLFESAAHEVPSGPNPISN 237

BLAST of MC06g_new0525 vs. ExPASy TrEMBL
Match: A0A4S4EDK3 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_014294 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.75e-07
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 30  LTLLFIFLFLFLSAAAAVPSSSSMASLEPQRRLVEHSSSNP-------PRKQR----SDS 89
           L+LLFIFL L  S   +  + SSMAS  P RRL+  SSS+P       P+K +    S S
Sbjct: 42  LSLLFIFLILVHSEDPST-TPSSMASSIPTRRLLADSSSSPSSKMNFHPKKTQNSHTSSS 101

Query: 90  ESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
            S S RR      FE+ AHEVPSGPNPISN
Sbjct: 102 SSSSTRRE-----FEAGAHEVPSGPNPISN 125

BLAST of MC06g_new0525 vs. ExPASy TrEMBL
Match: A0A6J0ZJY0 (CLAVATA3/ESR (CLE)-related protein 41 OS=Herrania umbratica OX=108875 GN=LOC110409477 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.12e-05
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 19  HSPPQSLLTSSLTLLFIFLFLFLSAAAAVPS--SSSMASLEPQRRLVEHSSSNPPR---- 78
           ++ PQSLL   LTL FIFL L  S      S  SSS +S+  +RRL+  SS +       
Sbjct: 30  YAKPQSLLLF-LTLFFIFLLLIHSTNPLNSSNVSSSSSSIPFRRRLLATSSKSTSYSTNQ 89

Query: 79  ---KQRSDSESKSLRRRRDDRRFESAAHEVPSGPNPISN 108
              KQ S S S S   +   R F + AHEVPSGPNPISN
Sbjct: 90  FRPKQTSPSSSSSASSKPSRREFGAEAHEVPSGPNPISN 127

BLAST of MC06g_new0525 vs. TAIR 10
Match: AT3G24770.1 (CLAVATA3/ESR-RELATED 41 )

HSP 1 Score: 42.4 bits (98), Expect = 2.8e-04
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 29  SLTLLFIFLFLFLSAAAAVPSS--SSMASLEPQRRLVEHSSSNPPRKQRSDSESK-SLRR 88
           +L LLFIFL L L ++  +P +   S + + P +R++  SS   P     D   K S RR
Sbjct: 17  TLLLLFIFLSLLLFSSLTIPMTRHQSTSMVAPFKRVLLESS--VPASSTMDLRPKASTRR 76

Query: 89  RRDDRR--FESAAHEVPSGPNPISN 109
            R  RR  F + AHEVPSGPNPISN
Sbjct: 77  SRTSRRREFGNDAHEVPSGPNPISN 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022931103.11.33e-0954.22uncharacterized protein LOC111437389 [Cucurbita moschata][more]
KAA0068203.18.81e-0861.82hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK211... [more]
KAE8650847.17.93e-0776.74hypothetical protein Csa_002136 [Cucumis sativus][more]
THG13816.19.80e-0750.00hypothetical protein TEA_014294 [Camellia sinensis var. sinensis][more]
XP_021274504.18.52e-0545.45CLAVATA3/ESR (CLE)-related protein 41 [Herrania umbratica][more]
Match NameE-valueIdentityDescription
A0A6J1EXF76.44e-1054.22uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
A0A5D3DC244.27e-0861.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LE331.55e-0772.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1[more]
A0A4S4EDK34.75e-0750.00Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0142... [more]
A0A6J0ZJY04.12e-0545.45CLAVATA3/ESR (CLE)-related protein 41 OS=Herrania umbratica OX=108875 GN=LOC1104... [more]
Match NameE-valueIdentityDescription
AT3G24770.12.8e-0444.71CLAVATA3/ESR-RELATED 41 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0525.1MC06g_new0525.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane