MC06g_new0496 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0496
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionReverse transcriptase domain-containing protein
LocationMC06: 22808410 .. 22815307 (-)
RNA-Seq ExpressionMC06g_new0496
SyntenyMC06g_new0496
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCGAGACTTTAATATAATAATTTCATAAAGAGTAATAACATATAGAGAATGAAACAATAGAATGATAAGAGTGCATTTGTTTGATGATCTAAAAATAATCAATAGAATTCTATCCTAGTGGAAAATTCGAAAAGAAGAGGTTGGAGAACCCAAAAACCGAGATTTGGGAGGGGGTCTTCGTTTACAAGGGGAGTATCAAGACAGACCAGTGATCCTGATGGGCCAAATGGTAAGGCAAACGAGGGTCCAGAAGATTTATTTCTACAGGAAAAGGTTGCGGGAAAGAAGAAAGCTTTTGAGTTTGAATCCAACAACGAACCAGGTTTTCAAGGTTTTGGGGTGCGGAGAGGAAGAGGAAATGGGAGGGGGATGGGTTACAGTTATGGTTCTTTTGGATCCCCCTTTGAAAACTCGGATTGGAACAGTGGAATGAATCCAGGGGGAAATGGGAATCCACCATGGATGGATGGGGAGCTGGATCCCGGCGAGTCTAGTTCGGACCATGAAGAACTATTCAACCGGGATCGAGAGCCCTTTCAGTCCTTTAAACAGAATTTCGATGGGATTGATAAGAGATCCTGGGAGTTTGGGGACCAGAGAGGATTGAATCCCAAGCTGAAGATCTATTCAGAAGACGTAGATGCAAGGAATCCTATGGAACAGGAGAAAGCAGAGGGGACTACCCAGGTGGACAATGATTTCATCATGAGCATGGAGGGTGGGGAAGACTCATCCACAGGGAAGTAATCTTTTACCTTAATTTGTTTTTAATGATTATTATATCCTGGAATTGTCGAGGTGCTAGTAGCCCTCGTTTTAAATCAATTTTTCGTGATATGATTGCTTCGTATAATCCGAATATTTTAGTTGTTCTTGAACCTAGAATTAGTGGTCATTTAGTTGAAAATGTTTGTAAGAGTTTTTCTAGTTTTTCTTTTACTCGTATCGAAGCTCAAGGATTTAAAGGTGGGATTTGGGAGTTCTGGCAAACTAACCAAGTGTCCCTATTTGAATTAGACCGTCACAATCAGGCTTTCCACTTTAAAGTATCAAAGGGTTCTTTTTCTGGCCTATTCACGGTCGTGTATGGGAGTCCTCAGAAGGGTTTTAGAGGGGAATTGTGGCAGTTCCTTGAGTCTCTCACTCCTAGTTCTGAGGTACCTTAGTTAATAATAGGAGATTTCAATGAAATCCTGGCAGACGAGGAAAAATTAGGGGGTGCACCGTTCAATCCAATTCTGGCCATCCCTTTCATAGAAACTATAAGTGTAACCTTATGGACCTTGGTAGTTTTTGCTCAAAATTTACATGGAGAGGCCCAGTTTTCCAAGGGTATAGTCGTATCTTTGAATGGTTAGATAGAGGTCTAGTTAATCAAAAATGGCAATTAGTCTTCCCAGAGCATCTATTCGAGTGCTACCAAGGGTTAAATCGGATCATCATCCCATTATGTTAGATATACATGGGTTTTGTGAAAGGTCCGTGTACAAAGACCGTTTAGGTCATGGCGGCTTGGCAAACTCACGGCTCTTTCCAGAATCTTATTAAGGAAGGCTGATCGAACATTGAATACTTCCAAATTGTTTAGCTACCTGTTGTCAACTAATTGTGCTACCAATTCTTATATGTGCAAGTGTACACAATCATCACAACAAGTAATAAAAGTTCGAATTCACGTCGACTAAATGTTTAAACACTCAATATTCACTTAAAGAAGCAATGCAATAAGCCAAAGGGGTTTTCTTCCACTAATAACTAAAAGATGTTGAGATAAAAACCATTTAAAATGATTTTCTTAAATAAAACACAGGTAGTGAGTTTGCTAGAATTACCGCACATCCACAATCACTCAGTAAGATCGTATGAAAACAAGGGCGCAACAGGGAGAGGAAGTCGATTCTTCTAGGCTACCCTAACTATGCTGCAGCATTAATAGAGTGAATGCAGTGGTCAAACAGACAAGATGTTCTTCCAAACACCTCAGATTTTCTACTACTAACATTCATAGACAAACATCAATAGCATGTATGCACAGTTTTTAAGATCAAGTTAGGTGATGTTTATCCCTAAGTCACCACACGCTAAACTCAAGTAGACTCTAGCCTAAGATGAAGGGTTTCGCTCCTTAATACATTTTTCCAAACATTATCAAAGAGGTATTTCAACATGGTGATCAAGCATATTGAAAATAGAGTGATAAAACAACTTCAACTCAAAGCAAAATAAGTTACAGCCCAGAAACTGAGTTTAGAACATCTCCCACTTACACAAGTTGATTAGCTAGACAATGCCATAGAGGGAGTCAAACAAAATGTAGGAATAAAAACAATACAAAGATGATAAAATGAAGAGAAGGAGCTGAAGGCCAGCTCCCAATAGCCACTGATATGAGCCTTCTTCTTCTTTTGATTTTCTCTAACGGTTTGGAGAGGTTTTCTTGGAGTCAGGGTGGATTCCTTCAAGAATGAGCAAGGGGAATGTTTCTTGGTGTTTGTGTGTCTTCGAGGCTTCTCTTCTTGTTTGCATTTATACCCCCTTCAGATATTAGGGCAACAACACGAGCCTTGAGGGACCCAGCTCTCACTTTTGGGTAAAAACCTCCAATTACTATGGTAAATGCCGCTGAGAAACCCGTTTAGTGCTGGCTTGCTACTTTTTGTCTTTTGTTTTTATCTGGAAATGATGTTGTCGCATCGTCACAGCTGCAGCAAAAAGTGCTCAAAATCAGATCATTCAATCGAGTGCTAACATTGAACTCTTAGTAATGCGAGACATTGATTTATCTTTTAATTCAAGCACACTTACTGAATATTTGGGGCTATAATAGACTAACTTTAGTTATTTCATGCAACTTATAGGCACAATTAACTCTCTTTAGGAGAGTTATCACTACCTTGAAAAGTAAGCTAATAAAGTGGAATAGAGAAGTGTTTCGGAATATTGTAGGAAGGAAGAGATCTATTTTAGCTCGGCTGGCTGGCATCCAGAGGATAATTCCTCATAATAGCAACCTTTTTTTTAGTAATCTGGAGAAAAGCCTTAGCAGTGAATTGGAAACTATCCTTCTCCAGGACGAAGTCACATGGTTTCAAAGATCTAGATGTGATTGGGTTCGGTTTGGGGATAGAAACACTAAATATTTTCACACAAAAACTATCACAGCTTGCAAAAGGATTAGAATAGACACATTAAAAAGTGAAAATGGGGTTTGGATAACAGATGAAGAGGTGTTGAGAAGTATGGCTTCTAACCACTTTTAAAATCTGTATGGGAGTCTGAAAAATGGTGCCAAGCTAGACACGTTAATTTCTTTTACTACTCTTCCTTTGGAAGCAATTGATATCTTATCTAAACCAGTGTCACTGAAAGAAGTTCGTAGAGCAGTTTTTTCTATGGGGGCCTTCAAAGCATCGGGGTCTGATGGATTCCAACCGGTTTTTTATCAACAGAATTGGGACCTGGTTGCTCCAGCAGTCTTGGCATTTGCTAAAAGTACAATAGAGGAGGGTAAAAATCAATTGATAAAGCTAACTCTACATATCTAGTGCTTATTCCCAAGGTGGATCATCCAGAAATTATCTTTCAGTTCCAACCCATAAGTCTGTGTAATGTTTCCTATAAGATTGTCACAAAATTAATCACTCTAAGGCTTAGGAAATACATAGGAGGGATTGTATCTCCTAATCAAGCTAGTTTTGTGCTTGGAAGACACATTCAAGATAATATAATCATAGCTTAAGAACTAGTGCATACTATATGGATAAGCTAAAGAGGAAGAAGAAATTCATGATGATCAAAGTAGAATTGGAGAAAGCTTATGATAGAGTTTCTTGGGAATTTCTAGAAGAATCTTAAGATTAGTAGGAATTCCAGTTAGTCTTAAGAATGTAATTATGGATTGTGTTTCAATAGCATTTATGCAAATCCTTTGGAATGGGGATCCTACTCCTATGTTTGAGATGCAAGGGGGTTCGTCAAGGGTGTCCACTCTCCCCTTATCTTTTTGTATTATGTTTAGAATGGCTGACACATTGTATTGCTGATTTAGTTGAGGGAAAAGATGGAAACCGATAAGAGTAGGGACTCACGGGCCAGCTATATCACACTTGTTTGCTGACGATATCTTGTTATTCGCTAAAGCTTATATGGAGCAAATGATGGAATTAAGTTCTGTGTTAGGGAAGTTTTGTGGGGCATATGGCCAAAAAGTAAACAACTCGAAAACTATCATTTACTTTTCTAAAAATATGCTACCTGAGGAACAAAATCTAATAGCTAACACCAGGGGTTTTAGATCAGTTACGTCGGATGTAGGGAGATATTTAGGTATTCCGATAGTCCATGGCAGGTTTCGTAGCTCGCATCTTCAGGGCATAGTAAACAGAGTTAGCATGAGGTTGAATAATTGGTCTGTTGCCTCCCTTTCTTTAGTAGGTCGGGCTATGCTGGTCCAATCTGTGCTTCAAGCCATACCAACTTATTCAATACATATATTTCGGTTTCTAGGAATTTTTTGTAGGAAGATGGATTAGTTATGTAGAAATTTCCTTTGGGGGCACACAAGGTCTAGAGCTAGGATTCACCTAATTAGTTTGGGAAAGGATTAGTAGACCTAAGAAGGGAGGGGTCTTAGTCTGCATAAATTTCAGGATTTTAATACGGCATTGATGGGTAAAATTATTTGGGGTTTAATAACTCGTCCTAATGAGTTGTGGGCCCAACTACTTATTAATAAGTAGGGTTGTTGGGAAGAAGACTGGAGCTTGAAATTTAGACAAGGAGACTCCTGACTTGGGTCTTCAATAGTGAAGGCTTGGGATGAAATTAAAAATTGTTGGGAGGGGCATTGGTAATGGGTGCAAAGTGAGATTTTGGACGGATCCATGGGTTAATGGAAATATACTAATAGATAGCATTGGTGAGAATTGTTATAGAGAACAAAGACGACCCAAAACGAGACAAGAAATTGAAGCCCGAGATCATCGATTGGGGGAGACCAGCCCGCGATGTAACGGGCCGGCCCAAAGGACGACCTAGCACCAAGGCCGACGCCTCGGTGCCGACCCCACCTCGACGCCGAGACCTTCTCAGCGCCGAGGCGCCAACTTCTCAACAATCACCTTCGGGCCAAGATACCATGTGGGCATCCTCCGCTCGGATCTGTATCAGGAGGTTAAACACCCTTATTCGGGGTCGAGGCCGATCATTGGGCCTCGCAACTCTGAATTAGGGCTCAACTACAGAAGGTTCTGGAACTACCCTCACAGCTATAAATAGCAATGCAGCCTAACCCTAGAGGAGACAGGTGATATATCCCTAGTTCACTATTTTCTCAACTTTCCCTTGCTAACTTAGGCATCGGAACCCGTGTGACTGAGGTCACACCGGTTTAGATCGGTTTGGTTTTGCAGGTATTGGTTCCCTTATCATCGAGTTAGGTGTGTGCGAGAAGAAGAACCAGAAGGTCAAAATCCACGCATCAACAAGAATGTAATTATAGAAGGGGATAAGGGGCACCCGGTTAGAGATTATATTACAGTAGATGGTGAGTGGAATTGGGAAGCCTTTGCAGGAAAGATTAACCAATCATCACTTCTAGCTATTGCTAGTATTAGACCACCAGATATTTCGTTAAATCTCCCATATTTCCCTATTTGGATTGGATCCAAGAATGGGAAATATTCTGTGTCGTGTACCTATAATAGTTTCCAGTGCTTAGGAGCTTTGCCACCACAATCCAAATTATGGAAAACTGTTTGGAATTGGGAAGGCGCTCTTAGGATAAGTTGTTTTCTATGGTTAGTCTCGCATGAGAGACTCTTTAACGAATTATGAGAGATTTATGAGACATCTAAGTTCATCAAATAAGTGTGGCTATTGCCCGCAATATGCTGAAACTATCAGTTATGTCTTAAGAGACTGCAAATTTGCTAAGCAGGTTTGGATAAATCTAATCCCTATTAATATATCTAATGGCTTTTTTAATTGTGGATTGCAGGAATTGTTAGAAAACAATTTGGTTAAGGTTCCTCTGTCACCCCAATGGCCTTCCATCTTTGTGAATTGCCTTCCATCTTTGGGTTGGGATGCTGGCTACTATGGCAGTGGAGGAATAAAGTCATCTTTGATTCAACAGCCCACATACTTGAAGATCCAAGCATGGTGGTCAGACAGACTGCTGAGAGCTTCAGAAATTCATGGGAATTGGTGTCTAAACTTTCAAAGAAGCCTATTCGCCGCTGGGAAGAAATTAGTTGGAATCCCCCACCTTTTAACTGCTAGAAGCTGAACACAAATGGGTCTGTCCATGGGACCCTTGCTTTAGTCGGAGCTAGTGGCTTAATTAGAGAATCTGATGGGAAATGGATAAAGGGGTTCCAACAGAATCTAAGCTGCTCAACAGTTATTGTTGCCGAGTTCTGGGTCATTCTTTCAAGATTAGAACTGGCTTGGAATGTGGGATGTAGAAATTTGATGGTAGAATCTGACTCGGAGTCGGCGTGCATCTTAGTTCGAAACAGAACCAATTCCACAGCTATAATTAAACCAATCTGGACAAAGATTTCACAACTGTTGAGTAGGGATTGGATGGTATCGATCCATCACATTTATAGGGAGGCTAATTTCTGCGCTGATTGGTTGGCAAACCGCACCTGTAACCAACCTTTAGGTCTCCATATTTGTGAAGAGGCCCCTAGAGGACTTCTGCACTTGTTTATGCCTTATCTCTTGTTAGTTGTACTGGGTTGATGCCCCTTTTATCCTCCGAAAAAAATATATAATCATGAAAATTCTTCCAAAAAAAATAATCATGAATCTGGAAACAAATTATTTGATGAAAACAAGGGTTATATTTTATATATTTGGTATTTGGTAGCAAAATTAGAAATGGAA

mRNA sequence

ATGGGGGCCTTCAAAGCATCGGGGTCTGATGGATTCCAACCGGTTTTTTATCAACAGAATTGGGACCTGGTTGCTCCAGCAGTCTTGGCATTTGCTAAAAGTACAATAGAGGAGGGTAAAAATCAATTGATAAAGCTAACTCTACATATCTAG

Coding sequence (CDS)

ATGGGGGCCTTCAAAGCATCGGGGTCTGATGGATTCCAACCGGTTTTTTATCAACAGAATTGGGACCTGGTTGCTCCAGCAGTCTTGGCATTTGCTAAAAGTACAATAGAGGAGGGTAAAAATCAATTGATAAAGCTAACTCTACATATCTAG

Protein sequence

MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEGKNQLIKLTLHI
Homology
BLAST of MC06g_new0496 vs. NCBI nr
Match: KAG7576302.1 (Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 53.5 bits (127), Expect = 1.85e-06
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEG 39
           MG+FKA G DGFQPVFYQ++WD+V  +V+ F     E G
Sbjct: 908 MGSFKAPGPDGFQPVFYQKSWDIVGTSVIRFVLDFFESG 946

BLAST of MC06g_new0496 vs. NCBI nr
Match: XP_021762980.1 (uncharacterized protein LOC110727706 [Chenopodium quinoa])

HSP 1 Score: 51.6 bits (122), Expect = 8.82e-06
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIE 37
           +G+ KA G DGFQ +FYQ+NW+LVAP V A A  T+E
Sbjct: 392 LGSLKAPGPDGFQAIFYQKNWELVAPNVYAMALPTLE 428

BLAST of MC06g_new0496 vs. NCBI nr
Match: XP_021760596.1 (uncharacterized protein LOC110725423 [Chenopodium quinoa])

HSP 1 Score: 51.2 bits (121), Expect = 1.21e-05
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1  MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIE-----EGKN 41
          M AFKA GSDGFQP+F+Q+ W+LVAP ++   K  +E     EG N
Sbjct: 50 MKAFKAPGSDGFQPLFFQRYWELVAPILIRLVKDVLEGVSFPEGLN 95

BLAST of MC06g_new0496 vs. NCBI nr
Match: PKI60521.1 (hypothetical protein CRG98_018997 [Punica granatum])

HSP 1 Score: 50.8 bits (120), Expect = 1.65e-05
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEGKN 41
           M +F A G DGFQ VF+Q NW++V P++LA+A++  E G++
Sbjct: 237 MPSFMAPGPDGFQAVFFQNNWEVVFPSLLAYARAVFEAGQS 277

BLAST of MC06g_new0496 vs. NCBI nr
Match: KNA05903.1 (hypothetical protein SOVF_186040 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 50.8 bits (120), Expect = 1.65e-05
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIE-----EGKN 41
           M AFKA G DGFQP+FYQ+ WDL++P+++   +  IE     EG N
Sbjct: 438 MEAFKAPGPDGFQPIFYQKYWDLISPSLIRTVQEVIEGVDFPEGLN 483

BLAST of MC06g_new0496 vs. ExPASy TrEMBL
Match: A0A2I0JW53 (Reverse transcriptase domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_018997 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.98e-06
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEGKN 41
           M +F A G DGFQ VF+Q NW++V P++LA+A++  E G++
Sbjct: 237 MPSFMAPGPDGFQAVFFQNNWEVVFPSLLAYARAVFEAGQS 277

BLAST of MC06g_new0496 vs. ExPASy TrEMBL
Match: A0A0K9QGS7 (Nucleotid_trans domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_186040 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.01e-06
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIE-----EGKN 41
           M AFKA G DGFQP+FYQ+ WDL++P+++   +  IE     EG N
Sbjct: 438 MEAFKAPGPDGFQPIFYQKYWDLISPSLIRTVQEVIEGVDFPEGLN 483

BLAST of MC06g_new0496 vs. ExPASy TrEMBL
Match: O82276 (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana OX=3702 GN=At2g31080 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.10e-05
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEG 39
           MG FKA G DG+QPVFYQQ W+ V P+V  F     E G
Sbjct: 304 MGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETG 342

BLAST of MC06g_new0496 vs. ExPASy TrEMBL
Match: A0A6J0LK68 (uncharacterized protein LOC108831621 OS=Raphanus sativus OX=3726 GN=LOC108831621 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.10e-05
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEGK 40
           MG+FKA G DGFQP+FYQ+ WD V  +V+ F     + GK
Sbjct: 830 MGSFKAPGPDGFQPIFYQRCWDTVGESVIRFVHLFFQTGK 869

BLAST of MC06g_new0496 vs. ExPASy TrEMBL
Match: A0A6D2KE44 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS38558 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.82e-05
Identity = 20/39 (51.28%), Postives = 25/39 (64.10%), Query Frame = 0

Query: 1   MGAFKASGSDGFQPVFYQQNWDLVAPAVLAFAKSTIEEG 39
           MG FKA G DGFQP+FYQ+NW++V  +V  F       G
Sbjct: 437 MGRFKAPGPDGFQPIFYQENWEVVKESVTRFVLDFFRSG 475

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7576302.11.85e-0656.41Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa][more]
XP_021762980.18.82e-0659.46uncharacterized protein LOC110727706 [Chenopodium quinoa][more]
XP_021760596.11.21e-0552.17uncharacterized protein LOC110725423 [Chenopodium quinoa][more]
PKI60521.11.65e-0548.78hypothetical protein CRG98_018997 [Punica granatum][more]
KNA05903.11.65e-0550.00hypothetical protein SOVF_186040 isoform B, partial [Spinacia oleracea][more]
Match NameE-valueIdentityDescription
A0A2I0JW537.98e-0648.78Reverse transcriptase domain-containing protein OS=Punica granatum OX=22663 GN=C... [more]
A0A0K9QGS78.01e-0650.00Nucleotid_trans domain-containing protein (Fragment) OS=Spinacia oleracea OX=356... [more]
O822761.10e-0556.41Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana OX=3... [more]
A0A6J0LK681.10e-0552.50uncharacterized protein LOC108831621 OS=Raphanus sativus OX=3726 GN=LOC108831621... [more]
A0A6D2KE442.82e-0551.28Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS38558 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0496.1MC06g_new0496.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity