MC06g_new0492 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0492
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 22474690 .. 22476976 (-)
RNA-Seq Expression	MC06g_new0492
Synteny	MC06g_new0492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGACGATTCATCCATCCCGGACCTTACGCTTCTAAGACTTTCTCTTCCATTGTTTCACCCCACGAAGTCATCGATCACAAGGTTAGTGGTCGGGTAGATTATAACAAAATTTTTAGAAACATTTGTTGTTCTGATATCATTATCGGCGCTATCTGAAGCAGCCACGTAGATCTAGGGTCATTTTCATGTTGTGCTTGCAGGACTGAGAAATTTGGGGAAAAAATTAATCTCTGATTCAATCCCGTATTCAATCCCGGATGATTTTGGTCCGGGATAGAGTACGGGATTGAATCCGGGATCGAATTCAAAGTGTCTACATTCTGCCTTCCATCCCGGACCTTATCCCTGACCGTTTCGTTCCGGGATGAAAGGCAGAGAATATGGCTTTATTTTCTGCCTTTCATCCTGGAGGCGAAATGGTCCGGGATGGAAGGCAGAATGCAGACCCTTCGAATTTTTTTTTAAGTTGGTCTGCACTCAGCGTTTTTTTTTTAATTTCCTTGCATTAGTCTTTATTTAATTTTCTTTTTTTTTACCTTTGTATAGGACATATAATGGATTTGAGACTAATTCTAAACCGTGATGACTGGTTTCCGGCCACGTTGACCAACCTTGCCCATGTAGATAAAACCACTTCTAGGCAAAAGGGTAGGTTAACCCCAACCCAGTTAGACATGTTTAGGCAAACATGTTTCGGTCCCATTTTGGACATGGACGTAGTTTTTAACGGTCCGTTAATACATCATCTATTGTTGAGAGAGGTTGAAGAGCCTAGGCAGGACATCATTAGTTTCGACCTGTTTGGGAAAAGGGTCTCCTTTGGTAAGCGGGAGTTTGACCTAATCACCGGCCTCAGTCATAAGATGATTAGGGTAGATAACGATATTCCTGGCCGACGACTTCGAGCACGTTACTTTAAGGATAGTGTCAGGGTTAAGTATAGTGAGTTAGAGAAGATTTTTATGGAGGCAGTTTTTGACAACGATGAGGATGTTGTCAAGGTTGGCATAGTTTACTTCGTCGAGCTTGCCATGATGGGGAAGGAGAGGAAGCAATTTATAGATACGACCCTTTTAGGGGTTGTGGATAGGTAGGAGCTGTTCTGCAATCACGACTAGAGTTCGTTGATTTTCGAAAGAACACTTTGGAGCCTGAAGAATGCCCTGAAGGATAAACTGCCGGCGTACCAACAGAAGGCGAGAAATGACCCCACACACCAAGAGACTTATAGTCTCTACGGGTTTCCGTACGCATTTCAGGTTAGCGAGCTTTAAGTCAACTATAATTGAATATATTATTTAAATGCATTATTTATTTGACTTCACTGGATTCTAGGTATGGGCTTACGAAACGATATCGACGTTGAGTCTGCGCGTAGTCACGAGGCTGAGCGACGATGCCATTCCTCGACTCCTTAGGTGGTCGTGCATTTATTCTCGTGGGTTACTTACTCTGCAGAGAGACGTGTTCGATAACACGATGGTAAGTAATTATCTTGTGGTCGTGCGATTCAAATTTATTTTTTTCATTTAGGTCTAATCATAAGTTTTTTGCAGTTCAAGGTTAAGGAATACTTGGTTTCAACAAATGTTGAGGCAGAACACATGGTCCGTATCATGCGTCCACCAGAAGCCTGTGCCATACCTGCCCCGCCGGCTGTACCTGACCCGCCTACAATACCTGACCTGGCTGTTGTACCTGCCCCGACTGTAGTACGTAACCCGGCTGCAGTAGTTGACCCGCCTGCAGATCTGGAAAGGGGTACTCAAGAAAGAAAGGTGAAGGACAAAGGAAAGAATATCATAGAGGATCTAGTAGAAGAAGTCGAGACATTGGACGATGATGCATTACAGGGCCCTGCATTAGACGATGCTGGACCTAGTGGAAATGACAGCGAAGCGCTACAGAAGAGGTCGAAACAGAAAAAATTCAAAAATAAGATCAATAGATGGTTGAAGAGGCTCGATGACCGAGTTGGTGCTATTGAGGCCACACTGACTGGCTTCGGGGTCGCCCTGAAAGGTATCCAGAGATACCTGAAAAAACTGTCGAAGGTACGCATTTTATATGTATATAACATTAGGTATGTTTAGTTATTAATTATGATTAGTTGGGTCCGAGATAACGCTTATTGGTCCGTACTTTTCGTGCAAGGTAAATTCCCTGATCCGACCAAATATTTTGGACGTGGGGGTGGGCACGATGATGATGATCCATCGAATCAAAGGCCTGATGAGGCCCCAACGCCAGATGGAGGTCCGAAGAGTATGGACGAGGACTAG

mRNA sequence

ATGTTGGACGATTCATCCATCCCGGACCTTACGCTTCTAAGACTTTCTCTTCCATTGTTTCACCCCACGAAGTCATCGATCACAAGGGGTACTCAAGAAAGAAAGGTGAAGGACAAAGGAAAGAATATCATAGAGGATCTAGTAGAAGAAGTCGAGACATTGGACGATGATGCATTACAGGGCCCTGCATTAGACGATGCTGGACCTAGTGGAAATGACAGCGAAGCGCTACAGAAGAGGTCGAAACAGAAAAAATTCAAAAATAAGATCAATAGATGGTTGAAGAGGCTCGATGACCGAGTTGGTGCTATTGAGGCCACACTGACTGGCTTCGGGGTCGCCCTGAAAGGTAAATTCCCTGATCCGACCAAATATTTTGGACGTGGGGGTGGGCACGATGATGATGATCCATCGAATCAAAGGCCTGATGAGGCCCCAACGCCAGATGGAGGTCCGAAGAGTATGGACGAGGACTAG

Coding sequence (CDS)

ATGTTGGACGATTCATCCATCCCGGACCTTACGCTTCTAAGACTTTCTCTTCCATTGTTTCACCCCACGAAGTCATCGATCACAAGGGGTACTCAAGAAAGAAAGGTGAAGGACAAAGGAAAGAATATCATAGAGGATCTAGTAGAAGAAGTCGAGACATTGGACGATGATGCATTACAGGGCCCTGCATTAGACGATGCTGGACCTAGTGGAAATGACAGCGAAGCGCTACAGAAGAGGTCGAAACAGAAAAAATTCAAAAATAAGATCAATAGATGGTTGAAGAGGCTCGATGACCGAGTTGGTGCTATTGAGGCCACACTGACTGGCTTCGGGGTCGCCCTGAAAGGTAAATTCCCTGATCCGACCAAATATTTTGGACGTGGGGGTGGGCACGATGATGATGATCCATCGAATCAAAGGCCTGATGAGGCCCCAACGCCAGATGGAGGTCCGAAGAGTATGGACGAGGACTAG

Protein sequence

MLDDSSIPDLTLLRLSLPLFHPTKSSITRGTQERKVKDKGKNIIEDLVEEVETLDDDALQGPALDDAGPSGNDSEALQKRSKQKKFKNKINRWLKRLDDRVGAIEATLTGFGVALKGKFPDPTKYFGRGGGHDDDDPSNQRPDEAPTPDGGPKSMDED

Homology

[Close]

BLAST of MC06g_new0492 vs. NCBI nr
Match: XP_022153201.1 (uncharacterized protein LOC111020757 [Momordica charantia])

HSP 1 Score: 121 bits (304), Expect = 5.48e-29
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 50  EVETLDDDALQGPALDDAGPSGNDSEALQKRSKQKKFKNKINRWLKRLDDRVGAIEATLT 109
           E+  L+D  +   A+D+A PS ND E L+KR K+ KFK +I+R LKRLD+ VGAIE  L 
Sbjct: 337 EMGPLEDPVVDAHAVDEARPSANDGEGLEKRLKKNKFKKRISRRLKRLDNCVGAIEDKLG 396

Query: 110 GFGVALKG-----------KFPDPTKYFGRGGGHDDDDPSNQRPDEAPTPDGGPKSMDED 158
            FGVALKG           KFPD +KYFG GGG DDD PS+QRPDE+P PDGG KSMDED
Sbjct: 397 DFGVALKGIQIYLKKLAKGKFPDSSKYFGGGGGPDDDGPSDQRPDESPKPDGGRKSMDED 456

[Close]

BLAST of MC06g_new0492 vs. NCBI nr
Match: XP_022155163.1 (uncharacterized protein LOC111022304 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.76e-14
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 25  SSITRGTQERKVKDKGKNIIEDLVEEVETLDDDALQGPALDDAGPS 70
           + + RGTQER+VKDKGKNIIED VEE ETLDDDALQ PALDDAGPS
Sbjct: 104 ADLERGTQERRVKDKGKNIIEDPVEEAETLDDDALQSPALDDAGPS 149

[Close]

BLAST of MC06g_new0492 vs. ExPASy TrEMBL
Match: A0A6J1DJX9 (uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020757 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.65e-29
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 50  EVETLDDDALQGPALDDAGPSGNDSEALQKRSKQKKFKNKINRWLKRLDDRVGAIEATLT 109
           E+  L+D  +   A+D+A PS ND E L+KR K+ KFK +I+R LKRLD+ VGAIE  L 
Sbjct: 337 EMGPLEDPVVDAHAVDEARPSANDGEGLEKRLKKNKFKKRISRRLKRLDNCVGAIEDKLG 396

Query: 110 GFGVALKG-----------KFPDPTKYFGRGGGHDDDDPSNQRPDEAPTPDGGPKSMDED 158
            FGVALKG           KFPD +KYFG GGG DDD PS+QRPDE+P PDGG KSMDED
Sbjct: 397 DFGVALKGIQIYLKKLAKGKFPDSSKYFGGGGGPDDDGPSDQRPDESPKPDGGRKSMDED 456

[Close]

BLAST of MC06g_new0492 vs. ExPASy TrEMBL
Match: A0A6J1DM86 (uncharacterized protein LOC111022304 OS=Momordica charantia OX=3673 GN=LOC111022304 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.54e-15
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 25  SSITRGTQERKVKDKGKNIIEDLVEEVETLDDDALQGPALDDAGPS 70
           + + RGTQER+VKDKGKNIIED VEE ETLDDDALQ PALDDAGPS
Sbjct: 104 ADLERGTQERRVKDKGKNIIEDPVEEAETLDDDALQSPALDDAGPS 149

The following BLAST results are available for this feature:

BLAST of MC06g_new0492 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153201.1	5.48e-29	58.33	uncharacterized protein LOC111020757 [Momordica charantia]	[more]
XP_022155163.1	1.76e-14	82.61	uncharacterized protein LOC111022304 [Momordica charantia]	[more]

BLAST of MC06g_new0492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJX9	2.65e-29	58.33	uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DM86	8.54e-15	82.61	uncharacterized protein LOC111022304 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MC06g_new0492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g_new0492.1	MC06g_new0492.1	mRNA