MC06g_new0456 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0456
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC06: 20494364 .. 20495804 (-)
RNA-Seq Expression	MC06g_new0456
Synteny	MC06g_new0456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATTTTGTGCATAGTTGTTCCAATCTTTGTTCCAAACAAATTTGGTATCAGAACTAGGTTTGAGAGAGTGAGTCGAGTGTAAACACGTGAGTTAGAGTGTAAACACAAAGAGAGGTCGATGGGCAGCATACGACAATGCAATAAATGCGGCACAACCACTCATTCCCATCTTCAAAGGAGAATGATACGAATTCTGGAGCATTTGTATGAAGACTCTACTCAAATCTCAAGACTTATGGGAGTTGGTGGAATAAGGCTATGCAGATCCCGACGACGATCAAGGCAGGTTGCGGGAGAACAGGAAGAAGGATTCTAAGGCGTTGGTCATCATTCAACAGGTGGTCCATGACAACGTCTTCTCAAGAATCGCAGCGGCAGCAACGTCGAAGCAGGCGTTGTCTATTTTGTAGAAGAAGTTTCAAGGCAATTCGAAAGTCCTTGTGGTGAGATTGCAATAACTCAGGTGTGACTCTGAGGCCTTGATGATGAAGAATGGAGAATTGGTCGCTGATTTTTTGTCAAGAGCAACCAAAATAGTCAGTCAAATGCGGTCCTATGGCAAAACGATTATTGACCAGACCATTGTTGAAAAGGTACTTAAAAGTTTGACTCCAAAAATTGATCATGTAGTAGCTGCCATAAAAGAATCAATGGATTTGTCGGTTTTTACATTTGGTGAACTAATGAGGTCTCTTCAAGCTCATGAGTCGAGGATTAACAGATCGCTAGATAAAACCGAAGAAAAAGCATTTCAGATGAAAGAGGCAGCCTTCAAATTCAGAGAAGGTGATCATTCAGTGAATTGAGGCCGCAGAAGAGGCGGATTTCGTGGTCGAGGTCGTGGTTTCGGAAGAGGCAAAGGAAGATTCGAAGGACAAAGGCAGTTCTACGAGCAAACAAGCAACAAAAATGTAGTTCGGTGTTACCACTGAAAAAGATATGGGCACATAAAGGCAAACTGTTGGTACAATAATCAGAAAGCCAATTTTGCAGAGAATGAAATATCGACGAATACTGGAGATAGTAAGCTTTTTATGACTCATGTAGAAACTAACCAAAAGACAAGTGATATCTGGGTTGTAGATAGTGGTTGCTCAAATCACATGACAGGCACAAAAGTCTTCAGAGAACTTGATGAGGCAGAAAAGATGAAGGTGCAACTCGGAAACGGCAAGGATCTACAAGTTGAAGGCAAAGGTACGGTTGGTATTGAAATTAGCCATGGTAAACTCAAGCTCCTTCATAATGTTCAATTTGTACCCGATTTAGGATACAGTTTATTGAGTGTTGGACAACTGATGACTAGTAGATATTCCATAATATTTGATGATGATGCCTGTGTAATCAAAGATAAGCAGACAGGTCAAGAGATGGTTCAGGTTAAGATGAGCCAAAGCAAAATTTTTTCATTGGAAGTCTCAAAGTTTTGTTCTTGTTGC

mRNA sequence

ATGATGAAGAATGGAGAATTGGTCGCTGATTTTTTGTCAAGAGCAACCAAAATAGTCAGTCAAATGCGGTCCTATGGCAAAACGATTATTGACCAGACCATTGTTGAAAAGGTACTTAAAAGTTTGACTCCAAAAATTGATCATGTAGTAGCTGCCATAAAAGAATCAATGGATTTGTCGGTTTTTACATTTGGTGAACTAATGAGGTCTCTTCAAGCTCATGAGTCGAGGATTAACAGATCGCTAGATAAAACCGAAGAAAAAGCATTTCAGATGAAAGAGGCAGCCTTCAAATTCAGAGAAGGTGATCATTCAGTGAATTGA

Coding sequence (CDS)

ATGATGAAGAATGGAGAATTGGTCGCTGATTTTTTGTCAAGAGCAACCAAAATAGTCAGTCAAATGCGGTCCTATGGCAAAACGATTATTGACCAGACCATTGTTGAAAAGGTACTTAAAAGTTTGACTCCAAAAATTGATCATGTAGTAGCTGCCATAAAAGAATCAATGGATTTGTCGGTTTTTACATTTGGTGAACTAATGAGGTCTCTTCAAGCTCATGAGTCGAGGATTAACAGATCGCTAGATAAAACCGAAGAAAAAGCATTTCAGATGAAAGAGGCAGCCTTCAAATTCAGAGAAGGTGATCATTCAGTGAATTGA

Protein sequence

MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLSVFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGDHSVN

Homology

[Close]

BLAST of MC06g_new0456 vs. NCBI nr
Match: KAA0038907.1 (UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK04668.1 UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.42e-37
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQMR+YGKTI DQTIVEKV +SLTPK DHVVAAI+ES DLS
Sbjct: 84  MMKNGESIADFLSRATTIISQMRTYGKTITDQTIVEKVFRSLTPKFDHVVAAIEESKDLS 143

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAF 90
            FTF ELM S QAHESRINRS+++ +EKAF
Sbjct: 144 TFTFIELMGSHQAHESRINRSMERNKEKAF 173

[Close]

BLAST of MC06g_new0456 vs. NCBI nr
Match: TYK12002.1 (UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 1.77e-37
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++Y +TI D TIVEKVL+SLTPK DHVVA I+ES DLS
Sbjct: 82  MMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLRSLTPKFDHVVATIEESKDLS 141

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SLQAHESRINRS+++ EEKAFQ+K+   K+ + D
Sbjct: 142 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYNDSD 184

[Close]

BLAST of MC06g_new0456 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 6.54e-36
Identity = 73/103 (70.87%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++YG+TI DQTIVEKVL+SLTPK DHVVAAI+ES +L 
Sbjct: 208 MMKNGESIADFLSRATTIISQMQTYGETIKDQTIVEKVLRSLTPKFDHVVAAIEESKNLF 267

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SL+AHESRINRS+++ EEKAFQ+K+A  K+ + D
Sbjct: 268 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDAVPKYNDSD 310

[Close]

BLAST of MC06g_new0456 vs. NCBI nr
Match: TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 6.66e-36
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++YG+TI DQTIVEKVL+SLTPK DHVV AI+ES DLS
Sbjct: 94  MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLS 153

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SLQAHESRIN S++K EEKAF++K+   K+ + D
Sbjct: 154 TFTFIELMGSLQAHESRINISMEKNEEKAFKVKDVVPKYNDSD 196

[Close]

BLAST of MC06g_new0456 vs. NCBI nr
Match: KAA0055915.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 9.90e-36
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++YG+TI DQTIVEKVL+SLTPK DHVVAAI+ES DLS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SLQAHESRIN S++K +EKAF++K+   K+ + D
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSD 223

[Close]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL
Match: A0A5A7TBE0 (UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00220 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 6.90e-38
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQMR+YGKTI DQTIVEKV +SLTPK DHVVAAI+ES DLS
Sbjct: 84  MMKNGESIADFLSRATTIISQMRTYGKTITDQTIVEKVFRSLTPKFDHVVAAIEESKDLS 143

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAF 90
            FTF ELM S QAHESRINRS+++ +EKAF
Sbjct: 144 TFTFIELMGSHQAHESRINRSMERNKEKAF 173

[Close]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL
Match: A0A5D3CL10 (UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00080 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 8.57e-38
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++Y +TI D TIVEKVL+SLTPK DHVVA I+ES DLS
Sbjct: 82  MMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLRSLTPKFDHVVATIEESKDLS 141

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SLQAHESRINRS+++ EEKAFQ+K+   K+ + D
Sbjct: 142 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYNDSD 184

[Close]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 3.17e-36
Identity = 73/103 (70.87%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++YG+TI DQTIVEKVL+SLTPK DHVVAAI+ES +L 
Sbjct: 208 MMKNGESIADFLSRATTIISQMQTYGETIKDQTIVEKVLRSLTPKFDHVVAAIEESKNLF 267

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SL+AHESRINRS+++ EEKAFQ+K+A  K+ + D
Sbjct: 268 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDAVPKYNDSD 310

[Close]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL
Match: A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 3.22e-36
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++YG+TI DQTIVEKVL+SLTPK DHVV AI+ES DLS
Sbjct: 94  MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLS 153

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SLQAHESRIN S++K EEKAF++K+   K+ + D
Sbjct: 154 TFTFIELMGSLQAHESRINISMEKNEEKAFKVKDVVPKYNDSD 196

[Close]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL
Match: A0A5A7UQM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 4.79e-36
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MMKNGELVADFLSRATKIVSQMRSYGKTIIDQTIVEKVLKSLTPKIDHVVAAIKESMDLS 60
           MMKNGE +ADFLSRAT I+SQM++YG+TI DQTIVEKVL+SLTPK DHVVAAI+ES DLS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 61  VFTFGELMRSLQAHESRINRSLDKTEEKAFQMKEAAFKFREGD 103
            FTF ELM SLQAHESRIN S++K +EKAF++K+   K+ + D
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSD 223

The following BLAST results are available for this feature:

BLAST of MC06g_new0456 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0456 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038907.1	1.42e-37	77.78	UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK04668.1 UBN2 domai...	[more]
TYK12002.1	1.77e-37	69.90	UBN2 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK27735.1	6.54e-36	70.87	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK28117.1	6.66e-36	70.87	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0055915.1	9.90e-36	70.87	copia protein [Cucumis melo var. makuwa]	[more]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBE0	6.90e-38	77.78	UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CL10	8.57e-38	69.90	UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3DWP2	3.17e-36	70.87	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DWC7	3.22e-36	70.87	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UQM0	4.79e-36	70.87	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 ...	[more]

BLAST of MC06g_new0456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..79 e-value: 6.9E-10 score: 38.8
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 2..95
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g_new0456.1	MC06g_new0456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding