MC06g_new0428 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0428
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	receptor like protein 42-like
Location	MC06: 19114768 .. 19115508 (+)
RNA-Seq Expression	MC06g_new0428
Synteny	MC06g_new0428

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGCAAGGTACCGAGTGAATTTGTGTCTTGCGATATTGTTGGTTGTGTTTTTACTGCAAAAGGTGGCGAACAATATTTGAAATCGAGGGAGATGGATTACTCATTTTCACAACTAGCATTGATGGTGAATATAGACCTCTCTAATAACTCCTTGGTCGGATTCATTCCATGTGAGATAACGAGGTTGACGAAGTTAGTTGGATTGAATCTATCCCACAATAATCTATTAGGGACCATTCCTACTGAAATGGGGGCAATCTAGTCATTACAATCACTCGACTTATCTTTCAATCGATTTTCTGGGTCAATTCCCCAAAGCATGTCAAAATTAAATTCATTGGGGGTGTTGGTATTATCTCACAACAATCTCTCCGGAAACATTCCTTGAGAGGGTCATCTCTCCGCATTCAATGAGGCTTCCAGTTTTGATGGCAATCCTAAACTTTGTGGAGATCCACTCCCAGTTAAATGTGTGAATGAGAAACCATATGAGCCGCCACATGGACTTGAAAATGCAGATCAAGAGGAGGATGAAGGGGAAAAGTGGTTGCTTTATGTTATTATAATGCTTGGATTTGCTACTGGATTTTGGGCAGTTGTTGGAAGTTTAGTATTGAAGAGGAGTTTGAGATATGCTTATTTTATTTCAGGTTTGTGGATGAGACTCAATACAAGGTTCGTGCAGCAATATGGCGATGGTGGAGCAAAACTCAAAGAAATCTGCATTCACAAATGA

mRNA sequence

ATGACAGGCAAGGTACCGAGTGAATTTGTGTCTTGCGATATTGTTGGTTGTGTTTTTACTGCAAAAGGTGGCGAACAATATTTGAAATCGAGGGAGATGGATTACTCATTTTCACAACTAGCATTGATGGTGAATATAGACCTCTCTAATAACTCCTTGGTCGGATTCATTCCATTTAAATGTGTGAATGAGAAACCATATGAGCCGCCACATGGACTTGAAAATGCAGATCAAGAGGAGGATGAAGGGGAAAAGTGGTTGCTTTATGTTATTATAATGCTTGGATTTGCTACTGGATTTTGGGCAGTTGTTGGAAGTTTAGTATTGAAGAGGAGTTTGAGATATGCTTATTTTATTTCAGGTTTGTGGATGAGACTCAATACAAGGTTCGTGCAGCAATATGGCGATGGTGGAGCAAAACTCAAAGAAATCTGCATTCACAAATGA

Coding sequence (CDS)

ATGACAGGCAAGGTACCGAGTGAATTTGTGTCTTGCGATATTGTTGGTTGTGTTTTTACTGCAAAAGGTGGCGAACAATATTTGAAATCGAGGGAGATGGATTACTCATTTTCACAACTAGCATTGATGGTGAATATAGACCTCTCTAATAACTCCTTGGTCGGATTCATTCCATTTAAATGTGTGAATGAGAAACCATATGAGCCGCCACATGGACTTGAAAATGCAGATCAAGAGGAGGATGAAGGGGAAAAGTGGTTGCTTTATGTTATTATAATGCTTGGATTTGCTACTGGATTTTGGGCAGTTGTTGGAAGTTTAGTATTGAAGAGGAGTTTGAGATATGCTTATTTTATTTCAGGTTTGTGGATGAGACTCAATACAAGGTTCGTGCAGCAATATGGCGATGGTGGAGCAAAACTCAAAGAAATCTGCATTCACAAATGA

Protein sequence

MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIPFKCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATGFWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK

Homology

[Close]

BLAST of MC06g_new0428 vs. ExPASy Swiss-Prot
Match: Q6JN47 (Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 41/144 (28.47%), Postives = 59/144 (40.97%), Query Frame = 0


Query: 13   DIVGCVFTAKGGEQYLKSREMD---------YSFSQLALMVNIDLSNNSLVGFIPFKC-- 72
            ++ G V    G  + L+S +M             + L  +  +DLSNN L G IP     
Sbjct: 859  ELNGTVIEGIGQMRMLESLDMSRNQLSGVIPQDLANLTFLSVLDLSNNQLSGRIPSSTQL 918

Query: 73   ------------------VNEKP-YEPP-----HGLENADQEEDEGEKW---LLYVIIML 119
                              + E P Y PP     HG  N  QE DE E++     Y+ ++L
Sbjct: 919  QSFDRSSYSDNAQLCGPPLQECPGYAPPSPLIDHGSNNNPQEHDEEEEFPSLEFYISMVL 978

[Close]

BLAST of MC06g_new0428 vs. ExPASy Swiss-Prot
Match: Q6JN46 (Receptor-like protein EIX2 OS=Solanum lycopersicum OX=4081 GN=EIX2 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-04
Identity = 41/141 (29.08%), Postives = 59/141 (41.84%), Query Frame = 0


Query: 13  DIVGCVFTAKGGEQYLKSREMD---------YSFSQLALMVNIDLSNNSLVGFIPFKC-- 72
           D+ G V    G  + L+S ++             S L  +  +DLSNN L G IP     
Sbjct: 854 DLNGTVVEGIGQMKLLESLDLSRNQLSGMIPQGLSNLTFLSVLDLSNNHLSGRIPSSTQL 913

Query: 73  ------------------VNEKP-YEPP--HGLENADQEEDEGEKWL---LYVIIMLGFA 119
                             + E P Y PP   G     QE D+ +++     YV ++LGF 
Sbjct: 914 QSFDRSSYSGNAQLCGPPLEECPGYAPPIDRGSNTNPQEHDDDDEFSSLEFYVSMVLGFF 973

[Close]

BLAST of MC06g_new0428 vs. NCBI nr
Match: XP_022154604.1 (probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Momordica charantia])

HSP 1 Score: 292 bits (747), Expect = 6.26e-98
Identity = 147/169 (86.98%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP-- 60
           MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP  
Sbjct: 84  MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIPCE 143

Query: 61  -------------------FKCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATG 120
                               KCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATG
Sbjct: 144 ITRLTNFDGNPKLCGDPLPVKCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATG 203

Query: 121 FWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK 148
           FWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK
Sbjct: 204 FWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK 252

[Close]

BLAST of MC06g_new0428 vs. NCBI nr
Match: KAG6579680.1 (Receptor-like protein EIX2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 7.69e-18
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 57  IPFKCVNEKPYEPP-HGLENADQEEDEGEKWLLYVIIMLGFATGFWAVVGSLVLKRSLRY 116
           +P KC +E  ++PP   +EN D+EED+ EKWLLY++I+LG+  GFW VVG L+LKRS RY
Sbjct: 93  LPKKCTSENSFQPPFRNIENQDEEEDKWEKWLLYIMIILGYVVGFWGVVGVLILKRSWRY 152

Query: 117 AYF--ISGLWMRLNTRFVQQYGDGGAKLKEICIHK 148
           AYF  +     +++ R  +        LK +CIHK
Sbjct: 153 AYFNFVDETKDKIHARVHRSIET----LKGMCIHK 183

[Close]

BLAST of MC06g_new0428 vs. NCBI nr
Match: XP_022928831.1 (receptor like protein 42-like [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 2.17e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 57  IPFKCVNEKPYEPP-HGLENADQEEDEGEKWLLYVIIMLGFATGFWAVVGSLVLKRSLRY 116
           +P KC +E  ++PP   +EN D+EED+ EKWLLY++I+L +  GFW VVG L+LKRS RY
Sbjct: 119 LPKKCTSENSFQPPFRNIENQDEEEDKWEKWLLYIMIILEYVVGFWGVVGVLILKRSWRY 178

Query: 117 AYF--ISGLWMRLNTRFVQQYGDGGAKLKEICIHK 148
           AYF  +     +++ R  +        LK +CIHK
Sbjct: 179 AYFNFVDETKDKIHARVHRSIET----LKGMCIHK 209

[Close]

BLAST of MC06g_new0428 vs. NCBI nr
Match: KAA0055092.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.47e-16
Identity = 70/220 (31.82%), Postives = 85/220 (38.64%), Query Frame = 0


Query: 1   MTGKVPSEFVS-CDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP- 60
           +TGK   EF+  C    C+ T K   Q++KS   +YS +QL LMVNIDLSNNSLVGFIP 
Sbjct: 675 ITGKGIQEFIRFCWRRLCLNTEKNVVQFIKSNHFNYSTTQLRLMVNIDLSNNSLVGFIPK 734

Query: 61  ------------------------------------------------------------ 118
                                                                       
Sbjct: 735 EITMLKRLIGLNLSYNNLIGTIPMEIGELESLESLDLSFNKLSGRIPQSLSKLNSLGALE 794

[Close]

BLAST of MC06g_new0428 vs. NCBI nr
Match: XP_016903706.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.48e-16
Identity = 70/220 (31.82%), Postives = 85/220 (38.64%), Query Frame = 0


Query: 1   MTGKVPSEFVS-CDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP- 60
           +TGK   EF+  C    C+ T K   Q++KS   +YS +QL LMVNIDLSNNSLVGFIP 
Sbjct: 702 ITGKGIQEFIRFCWRRLCLNTEKNVVQFIKSNHFNYSTTQLRLMVNIDLSNNSLVGFIPK 761

Query: 61  ------------------------------------------------------------ 118
                                                                       
Sbjct: 762 EITMLKRLIGLNLSYNNLIGTIPMEIGELESLESLDLSFNKLSGRIPQSLSKLNSLGALE 821

[Close]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL
Match: A0A6J1DMM0 (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Momordica charantia OX=3673 GN=LOC111021826 PE=4 SV=1)

HSP 1 Score: 292 bits (747), Expect = 3.03e-98
Identity = 147/169 (86.98%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP-- 60
           MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP  
Sbjct: 84  MTGKVPSEFVSCDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIPCE 143

Query: 61  -------------------FKCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATG 120
                               KCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATG
Sbjct: 144 ITRLTNFDGNPKLCGDPLPVKCVNEKPYEPPHGLENADQEEDEGEKWLLYVIIMLGFATG 203

Query: 121 FWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK 148
           FWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK
Sbjct: 204 FWAVVGSLVLKRSLRYAYFISGLWMRLNTRFVQQYGDGGAKLKEICIHK 252

[Close]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL
Match: A0A6J1ELE2 (receptor like protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111435627 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.05e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 57  IPFKCVNEKPYEPP-HGLENADQEEDEGEKWLLYVIIMLGFATGFWAVVGSLVLKRSLRY 116
           +P KC +E  ++PP   +EN D+EED+ EKWLLY++I+L +  GFW VVG L+LKRS RY
Sbjct: 119 LPKKCTSENSFQPPFRNIENQDEEEDKWEKWLLYIMIILEYVVGFWGVVGVLILKRSWRY 178

Query: 117 AYF--ISGLWMRLNTRFVQQYGDGGAKLKEICIHK 148
           AYF  +     +++ R  +        LK +CIHK
Sbjct: 179 AYFNFVDETKDKIHARVHRSIET----LKGMCIHK 209

[Close]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL
Match: A0A5A7UGY7 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00180 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.20e-16
Identity = 70/220 (31.82%), Postives = 85/220 (38.64%), Query Frame = 0


Query: 1   MTGKVPSEFVS-CDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP- 60
           +TGK   EF+  C    C+ T K   Q++KS   +YS +QL LMVNIDLSNNSLVGFIP 
Sbjct: 675 ITGKGIQEFIRFCWRRLCLNTEKNVVQFIKSNHFNYSTTQLRLMVNIDLSNNSLVGFIPK 734

Query: 61  ------------------------------------------------------------ 118
                                                                       
Sbjct: 735 EITMLKRLIGLNLSYNNLIGTIPMEIGELESLESLDLSFNKLSGRIPQSLSKLNSLGALE 794

[Close]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL
Match: A0A1S4E635 (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis melo OX=3656 GN=LOC107990325 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.20e-16
Identity = 70/220 (31.82%), Postives = 85/220 (38.64%), Query Frame = 0


Query: 1   MTGKVPSEFVS-CDIVGCVFTAKGGEQYLKSREMDYSFSQLALMVNIDLSNNSLVGFIP- 60
           +TGK   EF+  C    C+ T K   Q++KS   +YS +QL LMVNIDLSNNSLVGFIP 
Sbjct: 702 ITGKGIQEFIRFCWRRLCLNTEKNVVQFIKSNHFNYSTTQLRLMVNIDLSNNSLVGFIPK 761

Query: 61  ------------------------------------------------------------ 118
                                                                       
Sbjct: 762 EITMLKRLIGLNLSYNNLIGTIPMEIGELESLESLDLSFNKLSGRIPQSLSKLNSLGALE 821

[Close]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL
Match: A0A6J1ER26 (probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucurbita moschata OX=3662 GN=LOC111435784 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.64e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 57  IPFKCVNEKPYEPP-HGLENADQEEDEGEKWLLYVIIMLGFATGFWAVVGSLVLKRSLRY 116
           +P KC  E  +EPP   +EN D+EE++ EKWLLY++I+LG+A GFW VVG+L+LKR+ RY
Sbjct: 849 LPKKCRTENSFEPPFRNIENQDEEENKWEKWLLYIMIILGYAVGFWGVVGALILKRNWRY 908

Query: 117 AYFISGLWMRLNTRFVQQYGD--------GGAKLKEICIHK 148
           AYF           FV +  D            LK +CIHK
Sbjct: 909 AYF----------NFVDETKDKIHATMQRSIETLKGMCIHK 939

The following BLAST results are available for this feature:

BLAST of MC06g_new0428 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6JN47	1.3e-04	28.47	Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2	[more]
Q6JN46	2.2e-04	29.08	Receptor-like protein EIX2 OS=Solanum lycopersicum OX=4081 GN=EIX2 PE=1 SV=2	[more]

BLAST of MC06g_new0428 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154604.1	6.26e-98	86.98	probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Momordica ...	[more]
KAG6579680.1	7.69e-18	46.32	Receptor-like protein EIX2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022928831.1	2.17e-16	45.26	receptor like protein 42-like [Cucurbita moschata]	[more]
KAA0055092.1	2.47e-16	31.82	putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma...	[more]
XP_016903706.1	2.48e-16	31.82	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 ...	[more]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMM0	3.03e-98	86.98	probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Momordic...	[more]
A0A6J1ELE2	1.05e-16	45.26	receptor like protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111435627 PE=4...	[more]
A0A5A7UGY7	1.20e-16	31.82	Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ...	[more]
A0A1S4E635	1.20e-16	31.82	probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis ...	[more]
A0A6J1ER26	5.64e-16	45.54	probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucurbita...	[more]

BLAST of MC06g_new0428 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48058:SF6	LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN	coord: 34..118
None	No IPR available	PANTHER	PTHR48058	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED	coord: 34..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g_new0428.1	MC06g_new0428.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016301	kinase activity