MC06g_new0343 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0343
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CACTA en-spm transposon protein
Location	MC06: 15483833 .. 15484341 (-)
RNA-Seq Expression	MC06g_new0343
Synteny	MC06g_new0343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTCAACATCGTGTGGGGCACGAGGCGTTTGCTATTATTGCAAAGGAGAAGGTACAATGCAATAATATTTTTTTAGCCAGATACTTATATTACTTAAGATCAATTATCAACAAAATTATGTGTTATCAACTGCAGAATGAAGAAGAGGGAGGTGACAACTTTTCTGAAATCGATTTGTTTAGGGAGACGAGATATTTTGACACTAAAGGTTGGGTTGAAGGAGCGGAGATAGCTTACGTAAGTTTACAAATCTTATAACAATTAACTTCAAATTACGCATTGAATTTTATGTGTAAACATTTTGTTCTTTTTAAAATATGTATGCAGCTAGACGTGATGCGTGTTAGAGAAGCATATACGGAAGACAGAGGTGAACCAATACCAAACCCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTCAGGATACGTTAAAGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCATAGAGGTTATTCTTCAAGTGTAGCATCAACACAATGA

mRNA sequence

ATGTCACTCAACATCGTGTGGGGCACGAGGCGTTTGCTATTATTGCAAAGGAGAAGGGAGACGAGATATTTTGACACTAAAGGTTGGGTTGAAGGAGCGGAGATAGCTTACCTAGACGTGATGCGTGTTAGAGAAGCATATACGGAAGACAGAGGTGAACCAATACCAAACCCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTCAGGATACGTTAAAGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCATAGAGGTTATTCTTCAAGTGTAGCATCAACACAATGA

Coding sequence (CDS)

ATGTCACTCAACATCGTGTGGGGCACGAGGCGTTTGCTATTATTGCAAAGGAGAAGGGAGACGAGATATTTTGACACTAAAGGTTGGGTTGAAGGAGCGGAGATAGCTTACCTAGACGTGATGCGTGTTAGAGAAGCATATACGGAAGACAGAGGTGAACCAATACCAAACCCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTCAGGATACGTTAAAGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCATAGAGGTTATTCTTCAAGTGTAGCATCAACACAATGA

Protein sequence

MSLNIVWGTRRLLLLQRRRETRYFDTKGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHRGYSSSVASTQ

Homology

[Close]

BLAST of MC06g_new0343 vs. NCBI nr
Match: KAA0035606.1 (Transposon, En/Spm-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.68e-09
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 25  DTKGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSH 84
           + KGWV  A+  Y ++M ++   +++  EP+   E+ E VLG RSG+VKG GWGP+PK+ 
Sbjct: 812 EKKGWVNAAKAKYDEMMELKTTSSQEGIEPLLEKEICERVLGKRSGHVKGQGWGPRPKNA 871

[Close]

BLAST of MC06g_new0343 vs. NCBI nr
Match: TYK14129.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.11e-08
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 31  EGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHRGYSSS 90
           + AE A+  +++++   T +  +P+   E+ + VLG R GY KG GWGPKPK+HR  S+S
Sbjct: 60  QAAEDAHNQMLKLQSQPTPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKAHRTASAS 119

Query: 91  VAST 94
            +ST
Sbjct: 120 SSST 123

[Close]

BLAST of MC06g_new0343 vs. NCBI nr
Match: KAA0032027.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK16848.1 formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.99e-08
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 27  KGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHR 85
           KGWV   +  Y +++ +    +++  EP+   E+ E VLG RSG+VKG GWGP+PK+ R
Sbjct: 74  KGWVNKPKAKYDEMVELETTSSQEGSEPLLEREICERVLGKRSGHVKGQGWGPRPKNAR 132

[Close]

BLAST of MC06g_new0343 vs. NCBI nr
Match: KAA0054540.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 8.07e-08
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 31  EGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHRGYSSS 90
           + AE A+  +++++   T +  +P+   E+ + VLG R GY KG GWGPKPK+HR  S+S
Sbjct: 225 QAAEDAHNQMLKLQSQPTPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKAHRTASAS 284

Query: 91  VAST 94
            +ST
Sbjct: 285 SSST 288

[Close]

BLAST of MC06g_new0343 vs. NCBI nr
Match: KAA0035743.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 8.83e-08
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 25 DTKGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSH 84
          +  GWV   +  Y +++ ++   +++  EP+   E+ E VLG RSG VKG GWGP+PK+ 
Sbjct: 5  EKNGWVNEEKEKYDEMVELKTTSSQEGSEPLLEREICERVLGKRSGNVKGQGWGPRPKNA 64

[Close]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL
Match: A0A5A7T089 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002870 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.26e-09
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 25  DTKGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSH 84
           + KGWV  A+  Y ++M ++   +++  EP+   E+ E VLG RSG+VKG GWGP+PK+ 
Sbjct: 812 EKKGWVNAAKAKYDEMMELKTTSSQEGIEPLLEKEICERVLGKRSGHVKGQGWGPRPKNA 871

[Close]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL
Match: A0A5D3CV48 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19074G00010 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.37e-09
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 31  EGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHRGYSSS 90
           + AE A+  +++++   T +  +P+   E+ + VLG R GY KG GWGPKPK+HR  S+S
Sbjct: 60  QAAEDAHNQMLKLQSQPTPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKAHRTASAS 119

Query: 91  VAST 94
            +ST
Sbjct: 120 SSST 123

[Close]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL
Match: A0A5D3D027 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001240 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.93e-08
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 27  KGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHR 85
           KGWV   +  Y +++ +    +++  EP+   E+ E VLG RSG+VKG GWGP+PK+ R
Sbjct: 74  KGWVNKPKAKYDEMVELETTSSQEGSEPLLEREICERVLGKRSGHVKGQGWGPRPKNAR 132

[Close]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL
Match: A0A5A7UGZ9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003240 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.91e-08
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 31  EGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSHRGYSSS 90
           + AE A+  +++++   T +  +P+   E+ + VLG R GY KG GWGPKPK+HR  S+S
Sbjct: 225 QAAEDAHNQMLKLQSQPTPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKAHRTASAS 284

Query: 91  VAST 94
            +ST
Sbjct: 285 SSST 288

[Close]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL
Match: A0A5A7SYR3 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00140 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.27e-08
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 25 DTKGWVEGAEIAYLDVMRVREAYTEDRGEPIPNPEVLETVLGYRSGYVKGAGWGPKPKSH 84
          +  GWV   +  Y +++ ++   +++  EP+   E+ E VLG RSG VKG GWGP+PK+ 
Sbjct: 5  EKNGWVNEEKEKYDEMVELKTTSSQEGSEPLLEREICERVLGKRSGNVKGQGWGPRPKNA 64

The following BLAST results are available for this feature:

BLAST of MC06g_new0343 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0343 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035606.1	4.68e-09	44.26	Transposon, En/Spm-like protein [Cucumis melo var. makuwa]	[more]
TYK14129.1	1.11e-08	42.19	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0032027.1	3.99e-08	42.37	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK16848.1 formin-l...	[more]
KAA0054540.1	8.07e-08	42.19	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0035743.1	8.83e-08	39.34	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T089	2.26e-09	44.26	Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CV48	5.37e-09	42.19	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3D027	1.93e-08	42.37	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7UGZ9	3.91e-08	42.19	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SYR3	4.27e-08	39.34	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of MC06g_new0343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g_new0343.1	MC06g_new0343.1	mRNA