MC06g_new0148 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0148
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationMC06: 6831906 .. 6833935 (-)
RNA-Seq ExpressionMC06g_new0148
SyntenyMC06g_new0148
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATTATTAATTTGTTTTTTGTTTGTTAGTGCAGGAGTTTTTCAACCTTATATATACAAGGCTTCTCTGTATTATTAAGTCATTGAATGAGAAGTAGAAATGACTTTTCTCCTGGATATAGGAGTTTCACATGGTAACAGAGCTTGCGTCTTGCGACAGAGTTCGATCATATGATTAAAAAAAAATTTCTCTGAATCCGTGATTCAGAAACATACCGCAAGATCTCTTTATCAATTCAATTCAGTTGCAGTATTGTGTTTTTGCTATTTCTTCTTCAATTTTTGCGATCTTTTGCAATGGACCAGTCAACGAACACTGAAGGTGAATCTGCTGGCAACGATGGAATTCAATGCAATCTAGTGGTAAATCCGGGTAACAAGATCTCTACCGTGAAGTTAACTGATGATAATTTTCTTTCGTGGAAATTTCAAGATCTCACTGCCCTAGAAGGTCACGGTTTAGAATCACATTTGGAACATGATCCGCCTTTTAAATTCCTTCAGGTTAGTGACAAATCTTCTATTGCTCTAAAATTAAATTCGGTTTTTACTAAGTGGAAGCGTCATGATAAATTGATATCCTCGTGGTTACTTGGTTATATGACTGAGACATTACCTGAACAATTACTACATTGTACATCGGCTAGGGAGATATGGAATTATCTTAGTACAAATTTTCACGTCTAGAAATTTAGCATAAGTGATGAAGAAAATTACAAACTCTACAAAAGGGAAATTCTAAACTAAAAGACTATTTTTCTCAAGTTAAAAAGTGTATTGATGCTCTAGCAGCCGTCGGTAAACCAGTTTCTATGGAGGATCATATTGTTTATCTATTATCGGTTTAGGATCTGAGTTTGAGTCGATGATTTCTGTTATTTCTACGAAATCTGGTCCTCAAACAGTACAAGATGTCATGGCTCTATTATTGACACAAGAAAATAGAATTGAAAGAAAGAAGAGTTTGATTAATTTTGATTGCACTATTCCTTCAGCCAATCTTACACATGCTGCTGCTATGGGCAAAGAGAATGATGCTCCTAGAAATAGCGCTCAGTTTGAGAATAACCATGGGGCAACTAATCGATTTCGAGGTTGGAACAATAAAGGAGGCCAATAGTGGAACAATAGAGGTCGAATTCAGTGCCAATTGTGTGGCAAATTTGGTCATACTGCTTCAAAGTGCAACTTTCATTTTGATCCAAGAGTTCAAAGACCTCCTTCCTCTGGTTCTAGTTCTTATTCTCCTCAGTACCAAACGGCCAATTTCTCCTCAAATGTCTGCACTGCTTACTACTCTACATTTGAATCATGATACCAACTGGTATCCTGATTTGGGTGCAACTAATCACCTCACTCATAATTTCAACCACTTGGTTGTTGGTACAGAATATCTTGACAGTAACCAAGTACAAGTTGGGAATGGTGCATGTTTCGACATCTTTCATTTTGGCCATTCTTCTTTTCAATCTCCTACTAATCGTATTCTTCATCTTAATAATTTACTTCATGTTCCTCAAATAACTAAAAACCTCATAAGTGTCAGTCAGTTTGCCAAAGATAACTCGATATTTTTTTAATCTCATCCTCTTTTTTGCTATGTAATGGATCCACATACTGGCCAAATACTTCTTCAATCGAGGGACTCTACATGATGGATTGTACCGGTTTCAACTCTCTTCTCTTTTGTCTGCCAATCTATTTTAAGCTCCCTTTGCATCTCAAGCTTTGACTACTCAGACTTTTCCAGTTTCATATTCTGTTTCTTCTTGTCATTCAGCATCTTTGTCTTCTGTTGATTTGTGGCATAGGCGACTTGGGCATCCGACCCTTCCCATTGTTAGACACATAATAAACTTGGACAAACCATGTACATCTTCTTCTATGTCTATGAATTTTTGTAATACTTGTGCTATGGGCAAAACTCATGCTCTTCCTTTTGTTCCTTCTACTACTGTTTACACAGCTCCCCTGCAATTAATTATATCTAATTTGTGGGGACCTGCTTTTACCGCCTCTAACAATGGCT

mRNA sequence

ATGGACCAGTCAACGAACACTGAAGGTGAATCTGCTGGCAACGATGGAATTCAATGCAATCTAGTGGTAAATCCGGGTAACAAGATCTCTACCGTGAAGTTAACTGATGATAATTTTCTTTCGTGGAAATTTCAAGATCTCACTGCCCTAGAAGGTCACGGTTTAGAATCACATTTGGAACATGATCCGCCTTTTAAATTCCTTCAGCCAATCTTACACATGCTGCTGCTATGGGCAAAGAGAATGATGCTCCTAGAAATAGCGCTCAGTTTGAGAATAACCATGGGGCAACTAATCGATTTCGAGGTTGGAACAATAAAGGAGGCCAATAGTGGAACAATAGAGGTCGAATTCAGTGCCAATTGTGTGGCAAATTTGGTCATACTGCTTCAAAGTGCAACTTTCATTTTGATCCAAGAGTTCAAAGACCTCCTTCCTCTGGTTCTAGTTCTTATTCTCCTCAGTACCAAACGGCCAATTTCTCCTCAAATGTCTGCACTGCTTACTACTCTACATTTGAATCATGATACCAACTGGTATCCTGATTTGGGTGCAACTAATCACCTCACTCATAATTTCAACCACTTGGTTGTTGGTACAGAATATCTTGACAGTAACCAAGTACAAGTTGGGAATGGTGCATGTTTCGACATCTTTCATTTTGGCCATTCTTCTTTTCAATCTCCTACTAATCGTATTCTTCATCTTAATAATTTACTTCATGTTCCTCAAATAACTAAAAACCTCATAAGTGTCAGTCAGTTTGCCAAAGATAACTCGATATTTTTTTAA

Coding sequence (CDS)

ATGGACCAGTCAACGAACACTGAAGGTGAATCTGCTGGCAACGATGGAATTCAATGCAATCTAGTGGTAAATCCGGGTAACAAGATCTCTACCGTGAAGTTAACTGATGATAATTTTCTTTCGTGGAAATTTCAAGATCTCACTGCCCTAGAAGGTCACGGTTTAGAATCACATTTGGAACATGATCCGCCTTTTAAATTCCTTCAGCCAATCTTACACATGCTGCTGCTATGGGCAAAGAGAATGATGCTCCTAGAAATAGCGCTCAGTTTGAGAATAACCATGGGGCAACTAATCGATTTCGAGGTTGGAACAATAAAGGAGGCCAATAGTGGAACAATAGAGGTCGAATTCAGTGCCAATTGTGTGGCAAATTTGGTCATACTGCTTCAAAGTGCAACTTTCATTTTGATCCAAGAGTTCAAAGACCTCCTTCCTCTGGTTCTAGTTCTTATTCTCCTCAGTACCAAACGGCCAATTTCTCCTCAAATGTCTGCACTGCTTACTACTCTACATTTGAATCATGATACCAACTGGTATCCTGATTTGGGTGCAACTAATCACCTCACTCATAATTTCAACCACTTGGTTGTTGGTACAGAATATCTTGACAGTAACCAAGTACAAGTTGGGAATGGTGCATGTTTCGACATCTTTCATTTTGGCCATTCTTCTTTTCAATCTCCTACTAATCGTATTCTTCATCTTAATAATTTACTTCATGTTCCTCAAATAACTAAAAACCTCATAAGTGTCAGTCAGTTTGCCAAAGATAACTCGATATTTTTTTAA

Protein sequence

MDQSTNTEGESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALEGHGLESHLEHDPPFKFLQPILHMLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSATFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVSQFAKDNSIFF
Homology
[Close]
BLAST of MC06g_new0148 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.0e-10
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 178 NWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLN 237
           NW  D GAT+H+T +FN+L +   Y   + V V +G+   I H G +S  S  +R L+L+
Sbjct: 330 NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSL-STKSRPLNLH 389

Query: 238 NLLHVPQITKNLISVSQFAKDNSI 262
           N+L+VP I KNLISV +    N +
Sbjct: 390 NILYVPNIHKNLISVYRLCNANGV 412

[Close]
BLAST of MC06g_new0148 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-09
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 178 NWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLN 237
           NW  D GAT+H+T +FN+L     Y   + V + +G+   I H G +S  + ++R L LN
Sbjct: 309 NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPT-SSRSLDLN 368

Query: 238 NLLHVPQITKNLISVSQFAKDNSI 262
            +L+VP I KNLISV +    N +
Sbjct: 369 KVLYVPNIHKNLISVYRLCNTNRV 391

[Close]
BLAST of MC06g_new0148 vs. NCBI nr
Match: XP_022147537.1 (uncharacterized protein LOC111016442 [Momordica charantia])

HSP 1 Score: 363 bits (931), Expect = 6.78e-125
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 74  MLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSA 133
           MLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSA
Sbjct: 1   MLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSA 60

Query: 134 TFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNF 193
           TFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNF
Sbjct: 61  TFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNF 120

Query: 194 NHLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVS 253
           N+LVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVS
Sbjct: 121 NNLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVS 180

Query: 254 QFAKDNSIFF 263
           QFAKDNSIFF
Sbjct: 181 QFAKDNSIFF 190

[Close]
BLAST of MC06g_new0148 vs. NCBI nr
Match: KAA0068024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK18104.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 1.57e-27
Identity = 96/284 (33.80%), Postives = 125/284 (44.01%), Query Frame = 0 

Query: 20  NLVVNPGNKISTVKLTDDNFLSWKFQDLTALEGHGLESHLEHD--PPFKFLQPILHMLLL 79
           N +   GNKIS VKL DDNFL WKFQ LTALE + +E+ LE +  PP K+L         
Sbjct: 20  NQIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESESEPPTKYLT-------- 79

Query: 80  WAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSATFIL 139
                                     G+   + + T   E+  +         Q+ +  L
Sbjct: 80  ------------------------STGSSSTSATRTPNPEYKES---------QNESK-L 139

Query: 140 IQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNH---------------------- 199
           I E    LP V + +  +T++     +       H NH                      
Sbjct: 140 ISETA--LPSVNI-VTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRN 199

Query: 200 --------------DTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 259
                         D+NWYPD GATNHLTH+ ++L  G+EY   NQ+   NG+   I H+
Sbjct: 200 KPQCQICTKLGHSADSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYTANGSGLPITHY 258

Query: 260 GHSSFQSPTN--RILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           G  SF S T   +   L NLLHVP ITKNLISVS FAKDN +FF
Sbjct: 260 GSMSFNSSTLPFKSFTLKNLLHVPSITKNLISVSLFAKDNHVFF 258

[Close]
BLAST of MC06g_new0148 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.94e-26
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 0 

Query: 162 PQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 221
           PQMSA++  L LN D+NWYPD GATNHLTH+ ++L +G+EY   NQ+   NG+   I H+
Sbjct: 331 PQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHY 390

Query: 222 GHSSFQSPTN--RILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           G  SF S T   +   LNNLL VP ITKNLISVSQFAKDN +FF
Sbjct: 391 GSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]
BLAST of MC06g_new0148 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.94e-26
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 0 

Query: 162 PQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 221
           PQMSA++  L LN D+NWYPD GATNHLTH+ ++L +G+EY   NQ+   NG+   I H+
Sbjct: 331 PQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHY 390

Query: 222 GHSSFQSPTN--RILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           G  SF S T   +   LNNLL VP ITKNLISVSQFAKDN +FF
Sbjct: 391 GSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]
BLAST of MC06g_new0148 vs. NCBI nr
Match: KAF7833293.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora])

HSP 1 Score: 109 bits (272), Expect = 7.94e-23
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 0 

Query: 162 PQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 221
           P M A +      +D  WYPD GATNH+T N  +L+   +Y    Q+ VGNGA  +I H 
Sbjct: 346 PMMQAHMAVPETLYDPAWYPDSGATNHVTANAQNLMTSADYSGQEQLHVGNGAGLNIQHI 405

Query: 222 GHSSFQSPTNR--ILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           GHSS +SP N    LHLNNLLHVP ITKNL+SVS+FA DN+ FF
Sbjct: 406 GHSSLKSPFNSSVTLHLNNLLHVPNITKNLVSVSRFAHDNNCFF 449

[Close]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match: A0A6J1D2M1 (uncharacterized protein LOC111016442 OS=Momordica charantia OX=3673 GN=LOC111016442 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 3.28e-125
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 74  MLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSA 133
           MLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSA
Sbjct: 1   MLLLWAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSA 60

Query: 134 TFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNF 193
           TFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNF
Sbjct: 61  TFILIQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNF 120

Query: 194 NHLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVS 253
           N+LVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVS
Sbjct: 121 NNLVVGTEYLDSNQVQVGNGACFDIFHFGHSSFQSPTNRILHLNNLLHVPQITKNLISVS 180

Query: 254 QFAKDNSIFF 263
           QFAKDNSIFF
Sbjct: 181 QFAKDNSIFF 190

[Close]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match: A0A5D3D3G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00260 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 7.58e-28
Identity = 96/284 (33.80%), Postives = 125/284 (44.01%), Query Frame = 0 

Query: 20  NLVVNPGNKISTVKLTDDNFLSWKFQDLTALEGHGLESHLEHD--PPFKFLQPILHMLLL 79
           N +   GNKIS VKL DDNFL WKFQ LTALE + +E+ LE +  PP K+L         
Sbjct: 20  NQIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESESEPPTKYLT-------- 79

Query: 80  WAKRMMLLEIALSLRITMGQLIDFEVGTIKEANSGTIEVEFSANCVANLVILLQSATFIL 139
                                     G+   + + T   E+  +         Q+ +  L
Sbjct: 80  ------------------------STGSSSTSATRTPNPEYKES---------QNESK-L 139

Query: 140 IQEFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNH---------------------- 199
           I E    LP V + +  +T++     +       H NH                      
Sbjct: 140 ISETA--LPSVNI-VTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRN 199

Query: 200 --------------DTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 259
                         D+NWYPD GATNHLTH+ ++L  G+EY   NQ+   NG+   I H+
Sbjct: 200 KPQCQICTKLGHSADSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYTANGSGLPITHY 258

Query: 260 GHSSFQSPTN--RILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           G  SF S T   +   L NLLHVP ITKNLISVS FAKDN +FF
Sbjct: 260 GSMSFNSSTLPFKSFTLKNLLHVPSITKNLISVSLFAKDNHVFF 258

[Close]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 9.37e-27
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 0 

Query: 162 PQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 221
           PQMSA++  L LN D+NWYPD GATNHLTH+ ++L +G+EY   NQ+   NG+   I H+
Sbjct: 331 PQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHY 390

Query: 222 GHSSFQSPTN--RILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           G  SF S T   +   LNNLL VP ITKNLISVSQFAKDN +FF
Sbjct: 391 GSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 9.37e-27
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 0 

Query: 162 PQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFHF 221
           PQMSA++  L LN D+NWYPD GATNHLTH+ ++L +G+EY   NQ+   NG+   I H+
Sbjct: 331 PQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHY 390

Query: 222 GHSSFQSPTN--RILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
           G  SF S T   +   LNNLL VP ITKNLISVSQFAKDN +FF
Sbjct: 391 GSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match: A5BFT3 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_017741 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 9.81e-23
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0 

Query: 161 SPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNHLVVGTEYLDSNQVQVGNGACFDIFH 220
           SPQ++ ++ T  +  D NWYPD GA+NH+T N  +L+   E+   NQV VGNG    I H
Sbjct: 351 SPQVNGVIPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKH 410

Query: 221 FGHSSFQSP-TNRILHLNNLLHVPQITKNLISVSQFAKDNSIFF 263
            G S F SP +++ L LN+LLHVP ITKNL+SVS+FAKDN +FF
Sbjct: 411 IGQSEFLSPFSSKPLLLNHLLHVPSITKNLLSVSKFAKDNKVFF 454

The following BLAST results are available for this feature:
BLAST of MC06g_new0148 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94HW28.0e-1041.67Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT945.2e-0939.29Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
BLAST of MC06g_new0148 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147537.16.78e-12599.47uncharacterized protein LOC111016442 [Momordica charantia][more]
KAA0068024.11.57e-2733.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0048297.11.94e-2658.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK10642.11.94e-2658.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAF7833293.17.94e-2353.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora][more]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D2M13.28e-12599.47uncharacterized protein LOC111016442 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A5D3D3G27.58e-2833.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7U2339.37e-2758.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CH979.37e-2758.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A5BFT39.81e-2352.88Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
BLAST of MC06g_new0148 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0148.1MC06g_new0148.1mRNA