MC06g_new0136 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0136
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA repair protein UVH3
LocationMC06: 6111545 .. 6120356 (-)
RNA-Seq ExpressionMC06g_new0136
SyntenyMC06g_new0136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTTCTATATCCTGTCCTTGCTGTGTTGGTAAATATTGTTATGAATTGTTTCATATACTAAGTTAGTATAAGGAGATTTTGGGAAGTTTGTTTTGCCTATAGCATAGTATTTGATAGTTTTTTGATTTTCTAGTATCCAATCCATATGTTGATGACTTTAACAAAAATCATAGGTGTCTCTGAGGTTTAAGAAAGTATAATTTATATTAGAGAACGTCCAGGGCAATTTTTAAGAAGTCAAAGAGAATTATCAACTTTTACAAAATGCAATTGCCCGTCTAGCTCACTTGGTAGAGCGCAAGGCTCTTAATATTGTATTAAATTTTTCTATTAAGCCCTTTTTTATTGGCTTTTTATAATGTAGATTGATAATAAAACCAATCCATATTATTCCAGTAGCATTTGAGTTGGAATAATCTTTCCTGTGCTGAAGCTGTCTTGTCTGGATGCCATGTTTAATTAAGTTGTAAGTTCCTTAAAAAAAATATGTATGTAATATATAAAATGTATAAATATATTACATACATATTTTTTTTAAGAGTTGCCTTTGTCTCAGTCTGAGCGTGATCTTTTCATCAGTCGCCTTTGCCCTTCGCTACTTCCATAATACTTCTGTTTGGCAGTTGGCGGCAATGAGAAATTGAAGGCAGAAGCGTCGAGGTCAAGAGAATTAAAAATGGGAGTGTTCGGTCTTCGGGAGTTATTGGCCCCCGTCGGTCACCGCGTCTCCGACGAGACCCTAGTCCGCTTGCCATCGGTATATATCTCTTTCCGCAAACCACAATTCTTCTTTTATTTTGTATGTGGATTAAGTTTTATGGATCTCCTTTGCAGAAGCGAGCATTTGGATGGTCCAATTCACAAAAGTAATGCACGATGACGGTGATGTGTCAAGCATTGCACTGTTACTGCATATGGACTGGTCATGATCGAGATGGTGTGATAGAGGTCCATACTTATTATTCCTCGTAGTCCCGTTTTTTCCATTTCCTTCCTTTTTTTCTAACAGAAAATTCATTGTTGCCTTGTCAATAATAGGGTGAACGAATTAATGTTTTCGAAATAAAAAGAAAAATCTTATTAACTATGTGGGAAAGGTCATACCTAGCGGGGGAGATCAGATGAACCACTAGCGCCTGGGCAGCTTATTAAAAGATTCAGCAATGCCCTTATTCGAAAAATTGGAATCACTCGTTGGTGGGAGGTGGTGAATTTAAAACCTATTTTTTCATAACTATGTTGCTTGCCAAATAAAAATTTCCTGGTTAGGTAACTCGCTCAACTAAATTTAATCATCTTTATTACCTTTAAGTTTTAAAAGCTTTTATCCCGTGACGTCTTGTAGGATCTGGGGTGATTGGAGCAGGCAGCCTTTGAAAAGTGACTGCCTGCCTGCTTAATTCTTATTGAATCCGTTCAATTTTGGCATATTAGGTGTCTTAGAGATCAGGAGGGTAAGAATATTTTAGGCAAAGAAGAGCAATCACGAACCTAGCTGAGCAGTAAATGACATCTATTCCCATTGAATTTGAAGGTTTGAAGGTTTGAATTCTCATATTCCATATTTGCCGTGCTACAAAAAATATTTTAGGCAAAAGAAATAAAGTTTTAAGGGCAATAGATTTGTGGAAAACTCTTATGGAAACTATGGCATAAGGTGTTCTAGGGTTTTAAGATTTATGGGTTTAGGATTTAGTATTGCTGTAGTTTAGGAAGCCTTAGCTGTAAGGACAAAGTGGTTGAGTAGTACGTTTATAGAAATGATCAACATTGGTATAAGTTCGTACATGGTATTCCTGGTATGACACAGAGCAAATTGAAGAGGACGTAAAGAAAAGTTATTAAAAGCATTAATCAATGAAGCTGAGATAGGCGCCAATAAAACACTCTTAATTGGAAGGTGGTGTCATTGGCCATTGAAAATGGGTGTTTGGGTGGTTGTAACTTAAGGTAAGGCAAAGAGAGTAGGATTTAGTGGCAAGTGTTGAGAAAATAACTCTTATAGAATTCGATGACATTTGGTATAAATACAAAGAGGAAGCCTGAAGAAAGGCAGAAACTCTCAAACCGGTGAAAGAAAAGAAAAATCATTGAAAGCATCAGGCTGTGAAGTTTAAAAGAGGAGCCAAGAAAACACTCTTAATTGGGATATGTGGTTTCACTAATTTATCTATTTGAAATTGCCAGTATGAGTTTAACTTAATGGTTATAATATGAGGCTAGTAAGGAAAAATAAAAATTAGTTTTGTTGAATCAGGATTTTTGAGAATTTGCACTAGGTAAAACTTCATACTTTTTGCTGATGGTTATTGTTTATCTCACATGCTTTATCATTTCTTTAGTATTTGGTGGACGGTAGATGACTGAGTTTAGTCATTTTGCCTTTATTTCACATACGACTTTATCTCCAACACTTTTCATAATTATGTCTGGACTGCAGCTATTATAATTTTCACGTATACTGAATCACTGATCATACTGCTTCTAGGGTAGTGTAGTTTTTGATGGTCTATTTTTTTTGTATCCAAATCCACGTTATAAAATTTATGTTAATCAAGTTGATTTGAGCGTAACATATTTCAGAGTTGATGATTATAATTTTGTTAGAGAACTTTTGGGAGCAATTAACGAGAAGTCTTCGACCAAACAGGTCGGATTCTCATTATTGCACTAAAATAAAGGATGATGGTTGTAGTTAATTAGATTAGCTGAATTGTTTAGCACATGTGCCCGTCTAGCTCAGTTGGTAGAGCGTAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCATGGTGGGCGATTTATATATTTTTTCTATTCATTGTTTTCCTGATTTCGTTTAACTATCTTTCTTGTGCTGGAGCGTGTTATCATCTTCTTCCCACCGGTCACAGTCTCACTCTGAGATCAGTCGCTTCCGCTACTTCCACAATACTCTGCAATGGGAAACTGAAAGCCGAATCGTCAATTGGAGTGCTCGGTCTTTGGGAGTTATTGGCCTCCGTCGGTCGCCGTGACTCTAACGAAACCCTAGCCGGCTAGCCGGCTTGTTATCGGTATATCTTATCCATATGACTAACTAGTTTTCATAGTTTACTTTTATAAAGTGCAGCTGTCTTTCTAGGTAACTTCAAGTCATTTTATGATTTACAAAAATTTTAAAAAATGAAAATGAATTCGATTCTTTGTAACTTCAAGTCATTCCCTAAGAATGTGAATTTTTCTTATCTTACAAATTGCAACTATCTTTTCCCCCCATAAATAGTGTCACCATATTCCTACCTTTTCTCATGGTTTCTCTCTGTCCCTTGTTGAAAATTGGAAATCTCTTCTTCTTTATAACAAGTTGAAATTTCCCCTGAATAGAAACATCAATGACTGGATCTTCTCTTTTGATTAAATCCCTAGCGCTTTAAGCCATAATGTAAACTGAAAGACGTGTATTTTACATAAATAGATATTTTAAAATAAACAATTTTATTTATTTTATCTACTTATTATTTTTTACAATTTGTTAGTACAAAGATAGAAAAGGACCATTACATGATCATGTTTAATTTTTCCTTGTCATAAATTTTGCTTGGTTTTATTTCTTTCTTGGCCTACACTACAAAATATTTCCTGATAATCATGCAATATGTTGGTCTTACAATGGTGCAGCGTTGTTAATGTTAACCTCCCTTTCATTTTAAAGAAAAAGATACATATTGCCTATATGGTAAGATAGGATAGGCAATGCCCTTGTGTGTAAAATTAGATTCACTTGGTGGGAGATGGTGAATTAAGTACCAATAATTCACAGATAACAGGTCCCAAAATATAAAGGGTTATATTGTATTTCACGGTGTGTTGCCTGTCAAACTTGTTCTTTGGAGAAATGGTAGCACCTAGCATTTATTCCTTGTTTTTCTGAACAAAATTTTACCGTTTAGAAATCTTGATCATAGATGTATCATCTCTATTACCTTTAAGTTCTAGAAGTTTTTTTATCTTGTGATATTGAAGTATCTAGCTTCAACGAGGTAGCAGCCCTTGAAGAGGTAGTACATGTCAACTTTAACTGTGTGCGTTTAGAGGTTCTGAGACATTGAAAAATCAAGTTCTTTAAGGGATCAAAGCATCACTGTAATTGACGGTGCCAAGTTAAAATAGGGCGACCTTAGAAGGTTATGTAATAAGTTGCTAAGAGGGCGACCTTTGAAGGTATGTATTAAGTTGCTTTTTATTTTGGCAATGGATACCCTATTTGTCATTGCATATGGACCTATAAATACAATATATCGTCATACTTTAATTATCTCGATAAATCTGAACACTTCCAATTAGTACTTGTGAGTTGCTTTTTATTTTTATTTCCTGTCCTTACTGCATTGGTATATTACTATGGTTGTTTCATATTCCTTTTCGATTTTGTAATGCAGAAAATATTCAGAATGCTAATATTCGCCAAAGGTAGGGTTTGAGTGGTTTTATATTCGTGATATATTATTAGAGGTTATATAATGGCAGTGTGCATGGCAAATCTTTCTTCATTAGTTTAGTAAGAGAGCTGAAGGGTTATTTGATTTAATTAGAAGAGACGAGAAAGTCACTAGTTCTTCAAAAAAGAAGATTCAGGCAAGGGGGTCTGTGGAAACTCCCACTTTTTCTAGCAAAGGAGTCAACTCCACTCCCTACCGATGCCTTACATTTAGCAACATGGTAGACTTTACAATTTATAGTGAGAATTAGTAGAAGGGGGATAAATAGAATGTTCTACATTTGAATGACGGGAGATTTAGTGACAGAAGCTTTACTGGTTATTGAAGATGAAAAGATTAAAAAAGATGTTTTTGGTGAAGGTGAAACAAGTAAAGTTTTCTAGTTGGGCAGAGAAGCTACCGACCTTATTTGAACAGGATTTGTTCTATAGATTGTACAATTGTGTCCTTGAGTTTTAAAGTTCGAAAGGTAAAGAAAGATGGAGCTACATTTAGTATAGACAATTTTAATTACTTATCTTTGATTCTTCCATGCTCCAAGTTGTCTGTGGAGGAACTCACATTCTGTTGATAGGTTTACTGAAATGATCATAGAAAGGAAAAAATAAAATTGACTTTGTTGAATCTAGTTTTATTACTTATCTATTAACACTTTTCTTAATATTGTGTTATACTCTTTACATTCCAATTCTCACATATACTGATCGTTCTACTTCTAAACAAATGTTCGGTGATTTTGGAAATTTCATTTTGCTTATGGTATAGTGTTGAAAAGATGTAGATTCTTTTTTTTGTCCAATTCAATGTACACAATTTATGTCAATCACTTTAAATAAATGATCACACACGTCTTTGAGATTTTAAGATAAGTTGATTTGAACATAACACATCTACATTGCTAGAGTACATTATAGTTTACGTTGGAGAATATAATTTTGAAAACATGGATGTGATGTTACTTTTAATCCAAGCTAATTATCAACATGGATCTGCCCGTCTAGCTCAGTTGGTAGAGCGAAAGACTCTTAACCTTGTGGTCGTGGGTTTGAGCCCCACAGTGGGCGGTGTAAATGATTTTGTCCAATGGCTCTATTTACCAGAGTTGGTAATAAATAAACAAAATTTTAAAATTATATAAATAATCAGTTTTTAGATATTATAATTATAAAAAATAAAACAATTAAGTTATTATCAGCTTAAATATACCACTTAATTCTCAATTTGATTCTTAATTTTTGAAGACTTTTTTTTTTTTGAGTGTTCAAACATCTACTTGAGGGATCAATTAGACACTTAGCTCAAATTCTAAGAAACAAAAAATGTTCACTAAATACACACCTATCTCAAATCATGTATTTTGTCAAAAAAAAAAAAAACTAATTTGTTTATTTATTTATTATTATTATTATTTGCCATTGGACCAGGTCAAATTTTGACACGATAGCACCAGGCTGTCATTGTTTCTCTTTGACCAGGTCAAATATTGACAGGCTGGCATCGCGTAAAGTAAAAGCAGAACTTCCCTATTTAAACTACCAGTACCAGACTCCACTCCTCACGAGTATCTTTACTTGTGGCGTAAGTAATTTCTCTGTTCGTTTCGTCGGAAATTGTTTCTCCATCACATCTTCTTCCTAGCAGTCTGAGAGTGATCTTCTTCTCAGTCGCCTTCGCTACTTACTCCTGTTTCGCGGTTGGCGACGATGAGAAACTCGGCTCTCCGGCGTCGGACTTTGATTGCACGCCGTACACAGCGTGAGAACGCCCAGGCTAAAGGTTGTAACGCCGCCCAGGGATTGCTTCTCAATCATGTAAGTTCACTCGGCTTCTAACCCTAACATCATCGGAATCTAAGTTTTCAATAAAATTTTAGGGTTTTTTGTTTAGTTAAAAAAATTATTTCTGATTCCATATATTGCTGTCTAACCTACTGTTCACCCGTAGGTTGTAAAGGAAATGTAGAAACCATTCTTAACGAAAAGGCTTATTCATTCGCTAATTCTACTTGGATTTTTCTTGGTATGACCATTTTAATTGAGGTAAGCAACCAATATTTGCGAAGTTGATGAATTTCTTTATATCTAATTAATGATACAGTTGAGAGATTTTGTTATATGCCGATGTATCTCCTACTTACTCTTGCTGACATCTTGCAATAATTTTTAAAATGTTGTTTGTAATTGTCTCTTTTGATGGTTGTCTCATTGCACTTTATGGAATTAACCGGTGAAACATGGTTAATACTAAAGCTATTTTATCAATTTACATGTGGAAAAATTGACCAGGTTTGCTTAATAGTTCTAATATGAGACTAGAAAGGAGAGGAAAAAAAAAGTTAGCCTGGTTGAATGTGGATTTTTTAGCGCCTAGCAATTGTTGTTTTAATATCAGTTTGCTGTGTTTTCTTGAATTGCCCAAATGTCTCATCATTTCTCTAGAATTTTGTGGATGGTAGGTGATTGAGTTTAGTCATTTTGTATTATGTCTTATTTCTGTAATTCGTGTCATGAGACCTTTCATTTTGATATAATAAAAATATACAAATAGATGAATGTTCAAGGAAATGAGACCTTTCCATAATTCTATTTTGCATGGCATCTGTTCCAATATTCACGTGTGCTGATCATGTGCTTCTAGGCAAATGTTTGGTACAAGGGGATGAATCAAATGTTTTACATTTAATGATCAAAATCTGGGATATTTAGTAACAGAAGCTTTAGTGGTTATTGAAGATCAAAAGATCAAAAGAAGATATTTTTGGTGAATAAGATGAACAGTTTGAATGTTGAGGAAGAAGAGAGGATGAAACAAGTGAAGTTTTCTAGTTGGGTAGAGAAGCTTGTTCAAAGGAGTTCTCTGAAAGGAAACAATCACTTTAAAAGAAGTTTGCATGGATTAAGGAAAATATAAAGCTAGAAGGGGATGCTCAAGGAGTGAAGCATTGAACAAAAGAAATTTCGGAACTGAAGGCAAAGAAAGAAAGCTTCAAGGGCAAAGGGGTGGTGGAGAATTGAGACGATGAACTTTTGCACGAGGTGTTTTATAATTTATGGTTTTGGGTTTAGGCCTTTAGGCCTTTAGGGTAACGAATAATACAAGGCAAAAAAGAAAGACAGTTTTAATGGCAAAGTGGTTAAATAATACTTTATTGAAATGATGGGAAATAGTATTCCTGTTCCTGTTATGACACAGCAACTCAAAGAGGAGCGAAGACAACATTCTCAAACTTAAGCCATAGGTAATACATTTTTTTCTAGATAAGGCCTAGGTAATACTACTTTATTGATTAAGATGGAGCGACATATAGACAATTTTAATTACTTATCTTTAATTCTTCCATGCTCCATCCTGCTGCAGTTATTTTATTGAGGTATCTGTGGGGAGACATTCTGTTGATAGGTTTGCTGAAATGAGGATAGAAAGGATAGAAGAAAGTTGGCTCTGTTGAATCGGGATTTTGGAGAACTTTCAGCAGGTAAAACTTCGTACTTTTTGCTGATAAAAGGCTCTAATATTGTTGTTTTTATGCTTTTTTTTAATTTCTCTAGTATCTAGTAGAGGGGGTTAATATGATTCAGTCCTTTTGTTTTGTTTTTTAGTTGGAGGGCCAATACCAGCTCAACTCAGGTTGGCAATATGATTCAGTCATTTCACCTTGCCTTGCCTTGCCTTACCTTTCTTAATTCTGTTTCGGACCGTCCATTCCAGTTCACATATTCTGATCATTTTACTTCTGGGAAAATTTTATTATGTTATTGATAGAGGGGGTACACACTGAAATATATATATATATATTTTTTGAAGCACACTGAAACGTATTTATTTAGTAAAAATTTAATTGGTGCCTAGTATAAGTAAATCTATAAACGAATTTAAATTAATTTGTTTATTTATTTATTATTATTACTACTTGCCGTTGGACCAGGTCAAATTTTGTGACACGCTGTCATCGGGCTGTAATTTTTTTCTTTGACCAGGTCAAATGTTGACAGGCTGGCATCGCGTAAAGTAAAGGCAGAACTTCCCTATATAAACTACCAGACTCTTTATTTGGGGCGTAGTTTCTCTGTTCGTTTCGTTCGAAATTGTTTCTTCATTTCATCTTCTTCCTAGCAATCTCAATCTCAGTCTTAGTCTGAGAGTGATCTTCTTCTCAGTTCTCAGTCGCCTTCGCTTCTTCCACTGTACAGTTCTGTTTTGCGGTTGGCGACAATTAGAAACTCGGCTCTCCGGCGTTGGAATCTGATTGCACGCCGTAGACAGCGTGAGAACGCTCTTGCTAAAGTTCGTAACACCGGCCAGGAATGCTTCTCGTTCATGTAA

mRNA sequence

ATGTCATCTTCTATATCCTGTCCTTGCTGTGTTGTTGGCGGCAATGAGAAATTGAAGGCAGAAGCGTCGAGGTCAAGAGAATTAAAAATGGGAGTGTTCGGTCTTCGGGAGTTATTGGCCCCCGTCGGTCACCGCGTCTCCGACGAGACCCTAGTCCGCTTGCCATCGAAGCGAGCATTTGGATGGTCCAATTCACAAAAGTCAAATATTGACAGGCTGGCATCGCGTAAAGTAAAAGCAGAACTTCCCTATTTAAACTACCAGTACCAGACTCCACTCCTCACGAGTATCTTTACTTGTGGCTCGCCTTCGCTACTTACTCCTGTTTCGCGGTTGGCGACGATGAGAAACTCGGCTCTCCGGCGTCGGACTTTGATTGCACGCCGTACACAGCGTGAGAACGCCCAGGCTAAAGGTTGTAACGCCGCCCAGGGATTGCTTCTCAATCATTCGCCTTCGCTTCTTCCACTGTACAGTTCTGTTTTGCGGTTGGCGACAATTAGAAACTCGGCTCTCCGGCGTTGGAATCTGATTGCACGCCGTAGACAGCGTGAGAACGCTCTTGCTAAAGTTCGTAACACCGGCCAGGAATGCTTCTCGTTCATGTAA

Coding sequence (CDS)

ATGTCATCTTCTATATCCTGTCCTTGCTGTGTTGTTGGCGGCAATGAGAAATTGAAGGCAGAAGCGTCGAGGTCAAGAGAATTAAAAATGGGAGTGTTCGGTCTTCGGGAGTTATTGGCCCCCGTCGGTCACCGCGTCTCCGACGAGACCCTAGTCCGCTTGCCATCGAAGCGAGCATTTGGATGGTCCAATTCACAAAAGTCAAATATTGACAGGCTGGCATCGCGTAAAGTAAAAGCAGAACTTCCCTATTTAAACTACCAGTACCAGACTCCACTCCTCACGAGTATCTTTACTTGTGGCTCGCCTTCGCTACTTACTCCTGTTTCGCGGTTGGCGACGATGAGAAACTCGGCTCTCCGGCGTCGGACTTTGATTGCACGCCGTACACAGCGTGAGAACGCCCAGGCTAAAGGTTGTAACGCCGCCCAGGGATTGCTTCTCAATCATTCGCCTTCGCTTCTTCCACTGTACAGTTCTGTTTTGCGGTTGGCGACAATTAGAAACTCGGCTCTCCGGCGTTGGAATCTGATTGCACGCCGTAGACAGCGTGAGAACGCTCTTGCTAAAGTTCGTAACACCGGCCAGGAATGCTTCTCGTTCATGTAA

Protein sequence

MSSSISCPCCVVGGNEKLKAEASRSRELKMGVFGLRELLAPVGHRVSDETLVRLPSKRAFGWSNSQKSNIDRLASRKVKAELPYLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGCNAAQGLLLNHSPSLLPLYSSVLRLATIRNSALRRWNLIARRRQRENALAKVRNTGQECFSFM
Homology
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BLAST of MC06g_new0136 vs. ExPASy Swiss-Prot
Match: Q9ATY5 (DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 51/122 (41.80%), Postives = 58/122 (47.54%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLVRLPSKRAFGWSNSQKSNIDRLASRKVKAELPYLNYQY 89
           MGV GL ELLAPVG RVS ETL     + A   S      I   A R  K ++       
Sbjct: 1   MGVQGLWELLAPVGRRVSVETLAN--KRLAIDASIWMVQFIK--AMRDEKGDM------V 60

Query: 90  QTPLLTSIF--TCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGCNAAQGLL 149
           Q   L   F   C    L T    +      AL+RRT+IARR QRENAQ K    A+ LL
Sbjct: 61  QNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLL 112

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BLAST of MC06g_new0136 vs. NCBI nr
Match: THG02855.1 (hypothetical protein TEA_021779 [Camellia sinensis var. sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 1.79e-06
Identity = 54/148 (36.49%), Postives = 70/148 (47.30%), Query Frame = 0 

Query: 12  VGGNEKLKAEASRSRELKMGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSN 71
           +GG+   + E  R ++  MGV GL ELLAPVG RVS ETL   +L    +       K+ 
Sbjct: 20  IGGSNNRRKE-KRCQQATMGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAM 79

Query: 72  IDRLASRKVKAELP-------YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRR 131
            D        A +         L +    P+   +F  G+P               AL+R
Sbjct: 80  RDDKGEMVKNAHILGFFRRICKLLFLRTKPVF--VFDGGTP---------------ALKR 139

Query: 132 RTLIARRTQRENAQAKGCNAAQGLLLNH 150
           RT+IARR QRENAQAK    A+ LLLNH
Sbjct: 140 RTVIARRRQRENAQAKIRKTAEKLLLNH 149

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BLAST of MC06g_new0136 vs. NCBI nr
Match: RAL46874.1 (hypothetical protein DM860_005153 [Cuscuta australis])

HSP 1 Score: 58.5 bits (140), Expect = 4.62e-06
Identity = 53/130 (40.77%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETLV  RL    +       K+  +        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLVGKRLAIDASIWMIQFMKAMREEKGDMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QRENAQAK  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENAQAKIR 113

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BLAST of MC06g_new0136 vs. NCBI nr
Match: VFQ96897.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 58.5 bits (140), Expect = 4.62e-06
Identity = 53/130 (40.77%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETLV  RL    +       K+  +        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLVGKRLAIDASIWMIQFMKAMREEKGDMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QRENAQAK  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENAQAKIR 113

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BLAST of MC06g_new0136 vs. NCBI nr
Match: XP_004304600.1 (PREDICTED: DNA repair protein UVH3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 58.5 bits (140), Expect = 4.64e-06
Identity = 53/134 (39.55%), Postives = 63/134 (47.01%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETL   RL    +       K+  D        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLAGRRLAIDASIWMVQFMKAMRDEKGEMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QREN+QAK  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENSQAKLR 117

Query: 150 NAAQGLLLNHSPSL 154
             A+ LLLNH  S+
Sbjct: 121 KTAEKLLLNHLKSM 117

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BLAST of MC06g_new0136 vs. NCBI nr
Match: XP_019185768.1 (PREDICTED: DNA repair protein UVH3 isoform X1 [Ipomoea nil])

HSP 1 Score: 58.2 bits (139), Expect = 6.26e-06
Identity = 53/134 (39.55%), Postives = 63/134 (47.01%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETL   RL    +       K+  +        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMREEKGEMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QRENAQAK  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENAQAKIR 117

Query: 150 NAAQGLLLNHSPSL 154
             A+ LLLNH  S+
Sbjct: 121 KTAEKLLLNHLKSM 117

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BLAST of MC06g_new0136 vs. ExPASy TrEMBL
Match: A0A0A0LG49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G835790 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.78e-08
Identity = 62/141 (43.97%), Postives = 71/141 (50.35%), Query Frame = 0 

Query: 12  VGGNEKLKAEASRSRELKMGVFGLRELLAPVGHRVSDETLVRLPSKRAFGWSNSQKSNID 71
           +GGN++LK EASRSR       GL ELLAPVG RVS ETL     K A   S      I 
Sbjct: 30  IGGNDELKTEASRSR-------GLWELLAPVGRRVSVETLAG--KKLAIDASIWMVQFIK 89

Query: 72  RLASRKVKAELPYLNYQYQTPLLTSIFT--CGSPSLLTPVSRLATMRNSALRRRTLIARR 131
             A R  + E+       +   L   F   C    L T    +      AL+RRTLIARR
Sbjct: 90  --AMRDDRGEM------VRNAHLLGFFRRICKLLFLRTKPVFVFDGATPALKRRTLIARR 149

Query: 132 TQRENAQAKGCNAAQGLLLNH 150
            QRENAQAK    A+ LLLNH
Sbjct: 150 RQRENAQAKVRKTAEKLLLNH 153

[Close]
BLAST of MC06g_new0136 vs. ExPASy TrEMBL
Match: A0A4S4DJ58 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_021779 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.68e-07
Identity = 54/148 (36.49%), Postives = 70/148 (47.30%), Query Frame = 0 

Query: 12  VGGNEKLKAEASRSRELKMGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSN 71
           +GG+   + E  R ++  MGV GL ELLAPVG RVS ETL   +L    +       K+ 
Sbjct: 20  IGGSNNRRKE-KRCQQATMGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAM 79

Query: 72  IDRLASRKVKAELP-------YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRR 131
            D        A +         L +    P+   +F  G+P               AL+R
Sbjct: 80  RDDKGEMVKNAHILGFFRRICKLLFLRTKPVF--VFDGGTP---------------ALKR 139

Query: 132 RTLIARRTQRENAQAKGCNAAQGLLLNH 150
           RT+IARR QRENAQAK    A+ LLLNH
Sbjct: 140 RTVIARRRQRENAQAKIRKTAEKLLLNH 149

[Close]
BLAST of MC06g_new0136 vs. ExPASy TrEMBL
Match: A0A484N8J7 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38673 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.23e-06
Identity = 53/130 (40.77%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETLV  RL    +       K+  +        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLVGKRLAIDASIWMIQFMKAMREEKGDMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QRENAQAK  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENAQAKIR 113

[Close]
BLAST of MC06g_new0136 vs. ExPASy TrEMBL
Match: A0A328DMP3 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_005153 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.23e-06
Identity = 53/130 (40.77%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETLV  RL    +       K+  +        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLVGKRLAIDASIWMIQFMKAMREEKGDMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QRENAQAK  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENAQAKIR 113

[Close]
BLAST of MC06g_new0136 vs. ExPASy TrEMBL
Match: A0A540L684 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_032696 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.56e-06
Identity = 52/130 (40.00%), Postives = 61/130 (46.92%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLV--RLPSKRAFGWSNSQKSNIDRLASRKVKAELP---- 89
           MGV GL ELLAPVG RVS ETL   RL    +       K+  D        A L     
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLAGRRLAIDASIWMIQFMKAMRDEKGEMVRNAHLLGFFR 60

Query: 90  ---YLNYQYQTPLLTSIFTCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGC 149
               L Y    P+   +F  G+P               AL+RRT+IARR QRENAQ+K  
Sbjct: 61  RICKLLYLRTKPVF--VFDGGTP---------------ALKRRTVIARRRQRENAQSKLR 113

[Close]
BLAST of MC06g_new0136 vs. TAIR 10
Match: AT3G28030.1 (5'-3' exonuclease family protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.5e-06
Identity = 51/122 (41.80%), Postives = 58/122 (47.54%), Query Frame = 0 

Query: 30  MGVFGLRELLAPVGHRVSDETLVRLPSKRAFGWSNSQKSNIDRLASRKVKAELPYLNYQY 89
           MGV GL ELLAPVG RVS ETL     + A   S      I   A R  K ++       
Sbjct: 1   MGVQGLWELLAPVGRRVSVETLAN--KRLAIDASIWMVQFIK--AMRDEKGDM------V 60

Query: 90  QTPLLTSIF--TCGSPSLLTPVSRLATMRNSALRRRTLIARRTQRENAQAKGCNAAQGLL 149
           Q   L   F   C    L T    +      AL+RRT+IARR QRENAQ K    A+ LL
Sbjct: 61  QNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLL 112

The following BLAST results are available for this feature:
BLAST of MC06g_new0136 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ATY51.3e-0441.80DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1[more]
BLAST of MC06g_new0136 vs. NCBI nr
Match NameE-valueIdentityDescription
THG02855.11.79e-0636.49hypothetical protein TEA_021779 [Camellia sinensis var. sinensis][more]
RAL46874.14.62e-0640.77hypothetical protein DM860_005153 [Cuscuta australis][more]
VFQ96897.14.62e-0640.77unnamed protein product [Cuscuta campestris][more]
XP_004304600.14.64e-0639.55PREDICTED: DNA repair protein UVH3 [Fragaria vesca subsp. vesca][more]
XP_019185768.16.26e-0639.55PREDICTED: DNA repair protein UVH3 isoform X1 [Ipomoea nil][more]
BLAST of MC06g_new0136 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG491.78e-0843.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G835790 PE=3 SV=1[more]
A0A4S4DJ588.68e-0736.49Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0217... [more]
A0A484N8J72.23e-0640.77Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38673 PE=3 ... [more]
A0A328DMP32.23e-0640.77Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_005153 PE=3 SV=1[more]
A0A540L6845.56e-0640.00Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_032696 PE=3 SV=1[more]
BLAST of MC06g_new0136 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G28030.19.5e-0641.805'-3' exonuclease family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0136.1MC06g_new0136.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process