MC06g_new0102 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0102
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	MC06: 3958526 .. 3959213 (+)
RNA-Seq Expression	MC06g_new0102
Synteny	MC06g_new0102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACACACACGCACAAAATCGTAAATATAATATAATGGGTGGCTCTACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCATCGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCCAGTTCGAGTTCGAGTTCGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAAGCGCTGGATACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAATAATTACATCTGATGAAATTATGGCTAATTAATTCATATCTAAAATACTACTAGCTATAATGGTCGATGAAGCTTCTCTCCAATGTATTATTGTATTTTCGTTTTCACAAATTTATCAATCCAAGCCTACGTATGCATATCAGTAATAAATTCTACCTTCTAAAGTTCTCCAACTTTTTGCCAGTTTATCACAAGTAATTCATTCGGAAACTATATTTCCCCGAGCCAAAATAAATTCTAAACATAAAACATATATAATCATAAAG

mRNA sequence

ATGGGTGGCTCTACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCATCGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCCAGTTCGAGTTCGAGTTCGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAAGCGCTGGATACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAATAA

Coding sequence (CDS)

ATGGGTGGCTCTACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCATCGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCCAGTTCGAGTTCGAGTTCGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAAGCGCTGGATACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAATAA

Protein sequence

MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYGSGGGQGHAK

Homology

[Close]

BLAST of MC06g_new0102 vs. NCBI nr
Match: XP_022135308.1 (glycine-rich protein 5-like [Momordica charantia])

HSP 1 Score: 171 bits (434), Expect = 2.24e-52
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGA 60
           MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGA
Sbjct: 1   MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGA 60

Query: 61  GAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYG 120
           GAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYG
Sbjct: 61  GAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYG 120

Query: 121 SGGGQGHAK 129
           SGGGQGHAK
Sbjct: 121 SGGGQGHAK 129

[Close]

BLAST of MC06g_new0102 vs. NCBI nr
Match: XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 124 bits (312), Expect = 7.12e-34
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 7   TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 66
           ++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGS
Sbjct: 3   SWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGS 62

Query: 67  GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGGG 126
           GSSSSSSSSSSSSSSSS  GSGSDSGSEAGSYAGSRAGSG  GRGGG +GYGGGYGSG G
Sbjct: 63  GSSSSSSSSSSSSSSSS--GSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 122

Query: 127 QGHAK 129
            GH K
Sbjct: 123 GGHGK 125

[Close]

BLAST of MC06g_new0102 vs. NCBI nr
Match: XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121 bits (304), Expect = 1.10e-32
Identity = 103/125 (82.40%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 7   TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 66
           ++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGS
Sbjct: 3   SWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGS 62

Query: 67  GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGGG 126
               SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG  GRGGG +GYGGGYGSG G
Sbjct: 63  ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 122

Query: 127 QGHAK 129
            GH K
Sbjct: 123 GGHGK 123

[Close]

BLAST of MC06g_new0102 vs. NCBI nr
Match: XP_004146662.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypothetical protein Csa_019748 [Cucumis sativus])

HSP 1 Score: 121 bits (304), Expect = 1.27e-32
Identity = 105/126 (83.33%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 7   TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSG 66
           + KS +LAALLV SL VV+S+SRVARKDLGLDLGG+G+G+GAGVGIGLGGSGSGAG+GSG
Sbjct: 3   SLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSGSG 62

Query: 67  SGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGG 126
           SGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG  GRGG  +GYGGGYGSG 
Sbjct: 63  SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGSGY 122

Query: 127 GQGHAK 129
           G GH K
Sbjct: 123 GGGHGK 128

[Close]

BLAST of MC06g_new0102 vs. NCBI nr
Match: XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 120 bits (301), Expect = 3.33e-32
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 9   KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGS 68
           KS +LAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSGS
Sbjct: 5   KSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGS 64

Query: 69  SSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGGGQG 128
           SSSSSSSSSSSSSSS  GSGSDSGSEAGSYAGSRAGSG  G GGG +GYGGGYGSG G G
Sbjct: 65  SSSSSSSSSSSSSSS--GSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYGGG 124

[Close]

BLAST of MC06g_new0102 vs. ExPASy TrEMBL
Match: A0A6J1C4G6 (glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111007303 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.09e-52
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGA 60
           MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGA
Sbjct: 1   MGGSTATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGA 60

Query: 61  GAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYG 120
           GAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYG
Sbjct: 61  GAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYG 120

Query: 121 SGGGQGHAK 129
           SGGGQGHAK
Sbjct: 121 SGGGQGHAK 129

[Close]

BLAST of MC06g_new0102 vs. ExPASy TrEMBL
Match: A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 3.45e-34
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 7   TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 66
           ++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGS
Sbjct: 3   SWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGS 62

Query: 67  GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGGG 126
           GSSSSSSSSSSSSSSSS  GSGSDSGSEAGSYAGSRAGSG  GRGGG +GYGGGYGSG G
Sbjct: 63  GSSSSSSSSSSSSSSSS--GSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 122

Query: 127 QGHAK 129
            GH K
Sbjct: 123 GGHGK 125

[Close]

BLAST of MC06g_new0102 vs. ExPASy TrEMBL
Match: A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 6.17e-33
Identity = 105/126 (83.33%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 7   TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSG 66
           + KS +LAALLV SL VV+S+SRVARKDLGLDLGG+G+G+GAGVGIGLGGSGSGAG+GSG
Sbjct: 3   SLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSGSG 62

Query: 67  SGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGG 126
           SGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG  GRGG  +GYGGGYGSG 
Sbjct: 63  SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGSGY 122

Query: 127 GQGHAK 129
           G GH K
Sbjct: 123 GGGHGK 128

[Close]

BLAST of MC06g_new0102 vs. ExPASy TrEMBL
Match: A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.61e-32
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 9   KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGS 68
           KS +LAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSGS
Sbjct: 5   KSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGS 64

Query: 69  SSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGGGSAGYGGGYGSGGGQG 128
           SSSSSSSSSSSSSSS  GSGSDSGSEAGSYAGSRAGSG  G GGG +GYGGGYGSG G G
Sbjct: 65  SSSSSSSSSSSSSSS--GSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYGGG 124

[Close]

BLAST of MC06g_new0102 vs. ExPASy TrEMBL
Match: A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 3.01e-28
Identity = 98/127 (77.17%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 7   TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 66
           + KS +LAALLV S  V S+SRVARKDLGLDLGG+G+G+G G+GIGLGGSGSG+G+GSGS
Sbjct: 3   SLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGSGS 62

Query: 67  GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRGG--GSAGYGGGYGSG 126
           GS SSSSSSSSSSSSSS  GSGS+SGSEAGSYAGSRAGSG  GRGG  G +GYGGGYGSG
Sbjct: 63  GSGSSSSSSSSSSSSSS--GSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 122

Query: 127 GGQGHAK 129
            G GH K
Sbjct: 123 YGGGHGK 127

[Close]

BLAST of MC06g_new0102 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 87/119 (73.11%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 10  SSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS-GS 69
           S +L  L++ + V+ SESRVARKDLGLDLGGIG GIG G+GIG GGSGSGAGAGSGS G 
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 70  SSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYGSGGGQGH 128
            SSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSG   GG +G G G GSGGG GH
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSG--SGGRSGSGRGRGSGGGGGH 125

[Close]

BLAST of MC06g_new0102 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 12  LLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGL-GGSGSGAGAGSGSGSSS 71
           LL  +++ SLV+ +ESR+ARKDLG+DLGGIG+G+G G+GIGL GGSGSGAGAGSGSGS S
Sbjct: 9   LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68

Query: 72  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG 107
            SSSSSSSSSSSSSSGSG  +GS AGS+AGSRAGSG
Sbjct: 69  RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSG 104

The following BLAST results are available for this feature:

BLAST of MC06g_new0102 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0102 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135308.1	2.24e-52	100.00	glycine-rich protein 5-like [Momordica charantia]	[more]
XP_022921886.1	7.12e-34	84.00	glycine-rich cell wall structural protein 2-like [Cucurbita moschata]	[more]
XP_023515822.1	1.10e-32	82.40	counting factor 45-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004146662.1	1.27e-32	83.33	glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypoth...	[more]
XP_022988598.1	3.33e-32	83.74	glycine-rich cell wall structural protein 2-like [Cucurbita maxima]	[more]

BLAST of MC06g_new0102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4G6	1.09e-52	100.00	glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111007303 PE=4 ...	[more]
A0A6J1E2L6	3.45e-34	84.00	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0LWP0	6.17e-33	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1	[more]
A0A6J1JMR8	1.61e-32	83.74	glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7T0K2	3.01e-28	77.17	Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of MC06g_new0102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	1.2e-17	73.11	glycine-rich protein	[more]
AT4G30450.1	2.0e-17	76.04	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..98
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 6..127
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 6..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g_new0102.1	MC06g_new0102.1	mRNA