MC06g2264 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2264
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Sm-like protein LSM2
Location	MC06: 29857416 .. 29859800 (-)
RNA-Seq Expression	MC06g2264
Synteny	MC06g2264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCAATTAGAGGAACTTTGCACTCTGTCGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGGTACATAACTTCTTTACATATATTATATTTAAGCGATATAATTGATTGCTTATTTTATGGGCTCACGCACTCTGATGAGACCTGTGCTTCAGACGAGGGTTACTTCGAATTTGTTTTTATTTGTTTAGCATTTATGGTAGGCACATTCCTCCTCCTCATTCTGCTTATTTTGTATTCCACTTACCCTTTTATGCTCTCTTGATTATATTAATTGAAAGATTTTCTGGCGAGATGTATGATATATGCTTATATTCACAGATTATTTGTAGCACAGTTTGGTATCTTCATCTTAACATTCATTTTCTTTTCATCCATTGCTCTTTCATGAATTTTCTTTAGCTAAATATTTCTAGTAATTTTGTGGGTGGTTCTCAATTCGGTGGATTTCTCTCTTGTCACTTGGCTAGAGTTCCTAGCGGGGACCATCCGTTTCTTTCTTGCTGATTTTGAAGGGGGAGAGTAACAGGGGTTTATTATATTTAGTGCGAGTCTTCTTTATGTTTTTCTATTCCGTTTCTTTTTGGATCTCCACGTCCTGTTCTGGCAACTTATGCTGACATTTCGCCCCCTCTTCTTCTCGTAAACTAAATATTTGATGCAAGTTAAATTTATCAGTGTGATAAATTTGACTATGGTCAACACAGCACTTATATATATATATNTATATATATATATATAGTACATAAATGTGGAGATTGGAGCTCAAAACTTCAACGGAAGGGAACGTAATAGGTGGCTTATCTACGTAGCTATAGTTGGATTAACTATGAATCCATTATATTTTTATGTCAATTTCAGTATTCTTACAGATTATACACATTGATTGGAATCAATGAATGTGAATTGTTTAAGAGAGAAGTCGGAAATATTTATGAATGTAGAGGGTTTCCTGGTTGAGCTTAATTTGATTTTCTAATCCCACTAGGAAGCTAAAAGACTAGTTCTTATTGACTATCAGGTGCATGTTGTATCTAGTTCATGATTTTTTTCCCCAACTACTCAACTTAACAAACTTTTATGATGTAGGAGATTAGAAGGAACTTTTTTGGTATTAATTGTTGTTTTTTAGCTACAATTTATTAATTATTTTTAGTCGGAGATTGACCTGTTTGCCAAGTAGTTTTGTAGATTAATTGCTTTTAGTTAGTTAGTTAGTTATTTTTTCGGTTAGTTGGCTACTACCCTACCTGTATAATAAAGGGATGATCTTTTGTATCTTCAACACTTTTTGAATGGGATAGAATTTTTTGTTTCCGAGTCTAAATGTCGATTGGGGGAGAACTCTCATTTAATATTCATGCAAATATCTGAAGAGGCCAAGAAATGGTGGTGCTTATAGAGCTGGACCATCTTCAGAAAAATCAGACCAAAAACACTCGTTTTGTATCAAGAAAGTAGTTTTATAGATCGTGTAACTAAACACATAGCCTAAGTGCTGTGGTGTGTTTATTATTATTATTTTATCTTACCAAATCTTAGTTTAACACAACTTGTTACAAAGGTACCATCTTCATTCTTCAGCCTCTGTTCAATATCTGGCGGTGATTTCTGATAGATTCCAAATCCTTCTGTGGCTTCCTGTGAGTCGTAAGGCCACAGTTTTTAAGAAAGTAAAATTTCGAAACCAATCATGGTTGTGCTGTATAAACTTTGGTTTAAAAGATGTCGTAGGATGGGTATGGGATATATAAGAATGAGTTTGAAGTGTATGAACAGGAACTTTTTCCCAGTCTCTAGTTCTTGTTCTTTGTGGAATGAGTTTTTTTTTTTTGTTCTTCTTTCTTGATACAAGCCAACATGAAATTTCCCTTCGACACATATAAAAAATCTGAATGTAGGTAGTAGGAAGACTTACTGTTGTTGCTTGTTGGTTGCTGATTCTTTTATGGTTGGTGAATACTCTTGTTTTTGCTTGACCAAAAACATATGCAAATCTCATATATATATAAAAGAAGAAGGAAGAAAGAAAAAAGAACATCTGCAAATCCATTATTTCATTATGTTCTGCCCTGCGGTCTTAAATTTACTGTGCCCGTATCCATCATGTAATCTGCTGCCTGTAATTTTGTTGTCTTGAACTAATCGTGAATTTTTTTTTTCTCATTTCAGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATTGAGCTCTTGCATGATGCTACAAGACGCGAGGCTCGGGGTGGC

mRNA sequence

TTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCAATTAGAGGAACTTTGCACTCTGTCGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATTGAGCTCTTGCATGATGCTACAAGACGCGAGGCTCGGGGTGGC

Coding sequence (CDS)

TTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCAATTAGAGGAACTTTGCACTCTGTCGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATTGAGCTCTTGCATGATGCTACAAGACGCGAGGCTCGGGGTGGC

Protein sequence

LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Homology

[Close]

BLAST of MC06g2264 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93
          IRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 62 IRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of MC06g2264 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCF
Sbjct: 2  LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREA 90
          IRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 62 IRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of MC06g2264 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCF
Sbjct: 2  LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREA 90
          IRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 62 IRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of MC06g2264 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-30
Identity = 60/90 (66.67%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCF
Sbjct: 2  LFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREAR 91
          IRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 62 IRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]

BLAST of MC06g2264 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-26
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN F
Sbjct: 2  LFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRRE 89
          IRGS VRYV L  + VD  LL DATRRE
Sbjct: 62 IRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]

BLAST of MC06g2264 vs. NCBI nr
Match: PSR94797.1 (Sm-like protein LSM2, partial [Actinidia chinensis var. chinensis] >PSS14639.1 Sm-like protein LSM2, partial [Actinidia chinensis var. chinensis])

HSP 1 Score: 190 bits (483), Expect = 5.23e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92

[Close]

BLAST of MC06g2264 vs. NCBI nr
Match: XP_010038129.1 (sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like protein LSM2 [Gossypium raimondii] >XP_016739463.2 sm-like protein LSM2 [Gossypium hirsutum] >XP_017617356.1 PREDICTED: sm-like protein LSM2 [Gossypium arboreum] >XP_017983243.1 PREDICTED: sm-like protein LSM2 [Theobroma cacao] >XP_021279792.1 sm-like protein LSM2 [Herrania umbratica] >XP_022155587.1 sm-like protein LSM2 [Momordica charantia] >XP_022159883.1 sm-like protein LSM2 [Momordica charantia] >XP_022771071.1 sm-like protein LSM2 [Durio zibethinus] >XP_022931098.1 sm-like protein LSM2 [Cucurbita moschata] >XP_022995665.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023533254.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo] >XP_028067379.1 sm-like protein LSM2 [Camellia sinensis] >XP_028090491.1 sm-like protein LSM2 [Camellia sinensis] >XP_030451694.1 sm-like protein LSM2 [Syzygium oleosum] >XP_030514491.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516641.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516643.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_031373487.1 sm-like protein LSM2 [Punica granatum] >XP_038708368.1 sm-like protein LSM2 [Tripterygium wilfordii] >XP_038900043.1 sm-like protein LSM2 [Benincasa hispida] >XP_038900044.1 sm-like protein LSM2 [Benincasa hispida] >XP_039012105.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039013864.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039025119.1 sm-like protein LSM2 [Hibiscus syriacus] >KAB2016243.1 hypothetical protein ES319_D08G082900v1 [Gossypium barbadense] >KAF8006546.1 hypothetical protein BT93_K0754 [Corymbia citriodora subsp. variegata] >KAG6606434.1 Sm-like protein LSM2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036376.1 Sm-like protein LSM2 [Cucurbita argyrosperma subsp. argyrosperma] >TYG56740.1 hypothetical protein ES288_D08G087800v1 [Gossypium darwinii] >TYH57396.1 hypothetical protein ES332_D08G086900v1 [Gossypium tomentosum] >TYI68372.1 hypothetical protein E1A91_D08G085000v1 [Gossypium mustelinum])

HSP 1 Score: 190 bits (483), Expect = 5.40e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MC06g2264 vs. NCBI nr
Match: MBA0708852.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 190 bits (483), Expect = 5.40e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MC06g2264 vs. NCBI nr
Match: PPS11796.1 (hypothetical protein GOBAR_AA08840 [Gossypium barbadense])

HSP 1 Score: 190 bits (483), Expect = 5.57e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 3  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 62

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 63 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 94

[Close]

BLAST of MC06g2264 vs. NCBI nr
Match: KAA3471103.1 (sm-like protein LSM2 [Gossypium australe])

HSP 1 Score: 190 bits (483), Expect = 5.75e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 4  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 63

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 64 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 95

[Close]

BLAST of MC06g2264 vs. ExPASy TrEMBL
Match: A0A2R6QU42 (Sm-like protein LSM2 (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15206 PE=3 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.53e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92

[Close]

BLAST of MC06g2264 vs. ExPASy TrEMBL
Match: A0A5D2BJZ3 (Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.61e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MC06g2264 vs. ExPASy TrEMBL
Match: A0A0B0N830 (Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=LOC108461891 PE=3 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.61e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MC06g2264 vs. ExPASy TrEMBL
Match: A0A5J5UQ23 (Sm-like protein LSM2 OS=Gossypium barbadense OX=3634 GN=ES319_A08G077200v1 PE=3 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.61e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MC06g2264 vs. ExPASy TrEMBL
Match: A0A5D2TT01 (Sm-like protein LSM2 OS=Gossypium mustelinum OX=34275 GN=E1A91_A08G081000v1 PE=3 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.61e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 92
          IRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MC06g2264 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-46
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 60
          LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 61 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 93
          IRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 62 IRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of MC06g2264 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 64
          +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+
Sbjct: 6  FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHLSLRGN 65

Query: 65 VVRYVQLPPDGVDIELL 82
           +RY  L PD +++E L
Sbjct: 66 NIRYYIL-PDSLNLETL 79

[Close]

BLAST of MC06g2264 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 64
          +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+
Sbjct: 6  FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHLSLRGN 65

Query: 65 VVRYVQLPPDGVDIELL 82
           +RY  L PD +++E L
Sbjct: 66 NIRYYIL-PDSLNLETL 79

[Close]

BLAST of MC06g2264 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 64
          +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+
Sbjct: 6  FLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNP--VTLDHLSVRGN 65

Query: 65 VVRYVQLPPDGVDIELL 82
           +RY  L PD +++E L
Sbjct: 66 NIRYYIL-PDSLNLETL 79

[Close]

BLAST of MC06g2264 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 5  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 64
          + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 77

Query: 65 VVRYV 70
           V Y+
Sbjct: 78 NVLYI 80

The following BLAST results are available for this feature:

BLAST of MC06g2264 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H595	1.6e-45	94.57	Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1	[more]
Q9Y333	9.0e-33	74.16	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV...	[more]
O35900	9.0e-33	74.16	U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S...	[more]
Q54TF6	3.2e-30	66.67	Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX...	[more]
P38203	2.1e-26	65.91	U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of MC06g2264 vs. NCBI nr


Match Name	E-value	Identity	Description
PSR94797.1	5.23e-61	100.00	Sm-like protein LSM2, partial [Actinidia chinensis var. chinensis] >PSS14639.1 S...	[more]
XP_010038129.1	5.40e-61	100.00	sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like pro...	[more]
MBA0708852.1	5.40e-61	100.00	hypothetical protein [Gossypium laxum]	[more]
PPS11796.1	5.57e-61	100.00	hypothetical protein GOBAR_AA08840 [Gossypium barbadense]	[more]
KAA3471103.1	5.75e-61	100.00	sm-like protein LSM2 [Gossypium australe]	[more]

BLAST of MC06g2264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R6QU42	2.53e-61	100.00	Sm-like protein LSM2 (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841...	[more]
A0A5D2BJZ3	2.61e-61	100.00	Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 S...	[more]
A0A0B0N830	2.61e-61	100.00	Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=LOC108461891 PE=3 SV=1	[more]
A0A5J5UQ23	2.61e-61	100.00	Sm-like protein LSM2 OS=Gossypium barbadense OX=3634 GN=ES319_A08G077200v1 PE=3 ...	[more]
A0A5D2TT01	2.61e-61	100.00	Sm-like protein LSM2 OS=Gossypium mustelinum OX=34275 GN=E1A91_A08G081000v1 PE=3...	[more]

BLAST of MC06g2264 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03330.1	1.1e-46	94.57	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	2.4e-04	29.87	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	2.4e-04	29.87	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	2.4e-04	29.87	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	4.0e-04	33.85	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 4..71 e-value: 1.3E-17 score: 74.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..70 e-value: 7.6E-17 score: 60.8
None	No IPR available	GENE3D	2.30.30.100		coord: 1..91 e-value: 1.8E-31 score: 109.4
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PIRSF	PIRSF016394	Lsm2	coord: 1..92 e-value: 2.8E-50 score: 166.3
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PANTHER	PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	coord: 1..90
IPR016654	U6 snRNA-associated Sm-like protein LSm2	CDD	cd01725	LSm2	coord: 1..89 e-value: 2.31246E-62 score: 182.018
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 2..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2264.1	MC06g2264.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0120115	Lsm2-8 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding