MC06g2227 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2227
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Nucleolar protein 10
Location	MC06: 29599573 .. 29600023 (-)
RNA-Seq Expression	MC06g2227
Synteny	MC06g2227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAGAATCACCTCTTGGTTTGGTCACGCAATCTGCCCATCCAGGTAAAATTCTTTGCATTATCTGGCTAGTATTGTGCTAATTATATACCATCTCGTTTCACTGCCTTGCATAATTATCAATTTGATTTTGATAGGTAGATTGGCCATGCTATACTTCTGTAACTTCACATCTTGCTATAGTAATTGATTGAAACAATATACGCGGTCTATGTCATCCTTCAGCTTTCTCGGTAGAAATACATCATATGCTCTCTATATTGTTTGACTGGATTATTCAGATATTCCCTGCTAGGCTGTCCCTTATTTTAGCAGTTCTGGGGCTGATTATCTGTTGTACATTTTCTGACTGCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTTGGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC

mRNA sequence

CAGAAAGAATCACCTCTTGGTTTGGTCACGCAATCTGCCCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTTGGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC

Coding sequence (CDS)

CAGAAAGAATCACCTCTTGGTTTGGTCACGCAATCTGCCCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTTGGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC

Protein sequence

QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

Homology

[Close]

BLAST of MC06g2227 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 7.9e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 48
          +KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Sbjct: 18 KKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]

BLAST of MC06g2227 vs. ExPASy Swiss-Prot
Match: Q6BQP3 (H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP10 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 7  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 42
          G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Sbjct: 24 GEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58

[Close]

BLAST of MC06g2227 vs. ExPASy Swiss-Prot
Match: Q54J26 (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-10
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 48
          +KESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQQ P ++
Sbjct: 18 KKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64

[Close]

BLAST of MC06g2227 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-10
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPP 46
          +K  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQ  P
Sbjct: 18 KKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62

[Close]

BLAST of MC06g2227 vs. ExPASy Swiss-Prot
Match: Q6Q547 (H/ACA ribonucleoprotein complex subunit NOP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 42
          +K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGL+P Q
Sbjct: 18 KKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58

[Close]

BLAST of MC06g2227 vs. NCBI nr
Match: XP_022155661.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.48e-25
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Sbjct: 18 KKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 64

[Close]

BLAST of MC06g2227 vs. NCBI nr
Match: XP_011651438.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021665893.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hevea brasiliensis] >XP_027352960.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Abrus precatorius] >XP_031738537.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_038718649.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii] >PIN05065.1 H/ACA snoRNP complex, subunit NOP10 [Handroanthus impetiginosus] >KAE8650652.1 hypothetical protein Csa_011605 [Cucumis sativus] >KAF5738956.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii])

HSP 1 Score: 94.7 bits (234), Expect = 3.51e-24
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 18 KKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MC06g2227 vs. NCBI nr
Match: XP_008447412.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo] >XP_016900440.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 3.51e-24
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 18 KKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MC06g2227 vs. NCBI nr
Match: XP_039070740.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus] >XP_039070741.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus] >XP_039070742.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus])

HSP 1 Score: 94.7 bits (234), Expect = 3.51e-24
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESP+GL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Sbjct: 18 KKESPVGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 64

[Close]

BLAST of MC06g2227 vs. NCBI nr
Match: ACU15555.1 (unknown [Glycine max])

HSP 1 Score: 94.4 bits (233), Expect = 4.74e-24
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          QK+SPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 16 QKDSPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 62

[Close]

BLAST of MC06g2227 vs. ExPASy TrEMBL
Match: A0A6J1DSC6 (Nucleolar protein 10 OS=Momordica charantia OX=3673 GN=LOC111022740 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.18e-26
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Sbjct: 18 KKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 64

[Close]

BLAST of MC06g2227 vs. ExPASy TrEMBL
Match: A0A0A0LCV0 (Nucleolar protein 10 OS=Cucumis sativus OX=3659 GN=Csa_3G379730 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.76e-25
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          QKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 14 QKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 60

[Close]

BLAST of MC06g2227 vs. ExPASy TrEMBL
Match: A0A1S3BHD2 (Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.70e-24
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 18 KKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MC06g2227 vs. ExPASy TrEMBL
Match: A0A7J7CYK9 (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.70e-24
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 18 KKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MC06g2227 vs. ExPASy TrEMBL
Match: A0A2G9GIP1 (Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.70e-24
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 47
          +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Sbjct: 18 KKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MC06g2227 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-18
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 48
          +KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Sbjct: 18 KKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]

BLAST of MC06g2227 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 86.3 bits (212), Expect = 7.3e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 2  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY 48
          KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Sbjct: 18 KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 63

The following BLAST results are available for this feature:

BLAST of MC06g2227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XX8	7.9e-17	85.11	H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O...	[more]
Q6BQP3	2.9e-11	88.57	H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain A...	[more]
Q54J26	1.4e-10	68.09	H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 G...	[more]
Q6DRH5	3.2e-10	68.89	H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S...	[more]
Q6Q547	3.2e-10	73.17	H/ACA ribonucleoprotein complex subunit NOP10 OS=Saccharomyces cerevisiae (strai...	[more]

BLAST of MC06g2227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155661.1	1.48e-25	97.87	H/ACA ribonucleoprotein complex subunit 3-like protein [Momordica charantia]	[more]
XP_011651438.1	3.51e-24	93.62	H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021...	[more]
XP_008447412.1	3.51e-24	93.62	PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]...	[more]
XP_039070740.1	3.51e-24	93.62	H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus] >XP_0...	[more]
ACU15555.1	4.74e-24	93.62	unknown [Glycine max]	[more]

BLAST of MC06g2227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSC6	7.18e-26	97.87	Nucleolar protein 10 OS=Momordica charantia OX=3673 GN=LOC111022740 PE=3 SV=1	[more]
A0A0A0LCV0	3.76e-25	95.74	Nucleolar protein 10 OS=Cucumis sativus OX=3659 GN=Csa_3G379730 PE=3 SV=1	[more]
A0A1S3BHD2	1.70e-24	93.62	Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1	[more]
A0A7J7CYK9	1.70e-24	93.62	Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=...	[more]
A0A2G9GIP1	1.70e-24	93.62	Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3...	[more]

BLAST of MC06g2227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20490.1	5.6e-18	85.11	nucleolar RNA-binding Nop10p family protein	[more]
AT2G20490.2	7.3e-18	86.96	nucleolar RNA-binding Nop10p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PFAM	PF04135	Nop10p	coord: 3..35 e-value: 4.9E-14 score: 52.1
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PANTHER	PTHR13305	RIBOSOME BIOGENESIS PROTEIN NOP10	coord: 1..47
None	No IPR available	GENE3D	2.20.28.40	H/ACA ribonucleoprotein complex, subunit Nop10	coord: 1..37 e-value: 1.0E-11 score: 46.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR13305:SF1	H/ACA RIBONUCLEOPROTEIN COMPLEX, SUBUNIT NOP10-RELATED	coord: 1..47
IPR036756	H/ACA ribonucleoprotein complex, subunit Nop10 superfamily	SUPERFAMILY	144210	Nop10-like SnoRNP	coord: 2..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2227.1	MC06g2227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0042254	ribosome biogenesis
molecular_function	GO:0030515	snoRNA binding