MC06g2224 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2224
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	MC06: 29566879 .. 29567505 (+)
RNA-Seq Expression	MC06g2224
Synteny	MC06g2224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCTCAAGCAGTAGTGGCAGCAACATGATGAACAACAACAACCATCTGCAGGGTGCAGCAACTTCTTCTTCAAGCAGCAGATACGAGAATCAAAAGCGCCGTGACTGGAAAACCTTTGGCCAATATCTCAACAACCATCGCCCTCCACTGGCCCTCTCAAGATGTAGCGGAGCCCACGTCCTGGAGTTCCTCAGGTACTCGAGAGCGAGAGCAAAGAGAGAGCAATTACCCCTAACTTTAAAATCAATAGTATTCAATTCTGTGAGTTTTTATGAAAATTTCTGGTTCTGCCACTGTTCGTGCAGGTACTTGGATCAATTTGGTAAGACGAAAGTCCACGCCCCAATTTGCCCTTTCTATGGGCTACCGAATCCTCCAGCGCCATGCCCTTGCCCGCTGCGCCAAGCGTGGGGGAGCCTCGACGCTCTAGTCGGGCGCCTTCGAGCTGCCTTCGAAGAGAACGGCGGCAAGCCAGAAGCAAACCCGTTTGGTGCTCGAGCCGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAGAGAAAGCGTCCACCTTCACAGTTGCCCTTGCCTCAACAAACGCCTCATGGT

mRNA sequence

ATGGAGTTCTCAAGCAGTAGTGGCAGCAACATGATGAACAACAACAACCATCTGCAGGGTGCAGCAACTTCTTCTTCAAGCAGCAGATACGAGAATCAAAAGCGCCGTGACTGGAAAACCTTTGGCCAATATCTCAACAACCATCGCCCTCCACTGGCCCTCTCAAGATGTAGCGGAGCCCACGTCCTGGAGTTCCTCAGGTACTTGGATCAATTTGGTAAGACGAAAGTCCACGCCCCAATTTGCCCTTTCTATGGGCTACCGAATCCTCCAGCGCCATGCCCTTGCCCGCTGCGCCAAGCGTGGGGGAGCCTCGACGCTCTAGTCGGGCGCCTTCGAGCTGCCTTCGAAGAGAACGGCGGCAAGCCAGAAGCAAACCCGTTTGGTGCTCGAGCCGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAGAGAAAGCGTCCACCTTCACAGTTGCCCTTGCCTCAACAAACGCCTCATGGT

Coding sequence (CDS)

ATGGAGTTCTCAAGCAGTAGTGGCAGCAACATGATGAACAACAACAACCATCTGCAGGGTGCAGCAACTTCTTCTTCAAGCAGCAGATACGAGAATCAAAAGCGCCGTGACTGGAAAACCTTTGGCCAATATCTCAACAACCATCGCCCTCCACTGGCCCTCTCAAGATGTAGCGGAGCCCACGTCCTGGAGTTCCTCAGGTACTTGGATCAATTTGGTAAGACGAAAGTCCACGCCCCAATTTGCCCTTTCTATGGGCTACCGAATCCTCCAGCGCCATGCCCTTGCCCGCTGCGCCAAGCGTGGGGGAGCCTCGACGCTCTAGTCGGGCGCCTTCGAGCTGCCTTCGAAGAGAACGGCGGCAAGCCAGAAGCAAACCCGTTTGGTGCTCGAGCCGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAGAGAAAGCGTCCACCTTCACAGTTGCCCTTGCCTCAACAAACGCCTCATGGT

Protein sequence

MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG

Homology

[Close]

BLAST of MC06g2224 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.6e-67
Identity = 130/178 (73.03%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 1   MEFSSSSGS----NMMNNNNHLQGAAT--------------SSSSSRYENQKRRDWKTFG 60
           ME SS+ G     N+++NN+     AT              S++SSRYENQKRRDW TFG
Sbjct: 8   MEGSSAYGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFG 67

Query: 61  QYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAW 120
           QYL NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH  IC FYG PNPPAPCPCPLRQAW
Sbjct: 68  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAW 127

Query: 121 GSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 161
           GSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P
Sbjct: 128 GSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of MC06g2224 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.2e-66
Identity = 123/165 (74.55%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 4   SSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 63
           ++++ +   ++++   G + ++  SRYENQKRRDW TFGQYL NHRPPL+LSRCSGAHVL
Sbjct: 23  AAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 82

Query: 64  EFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 123
           EFLRYLDQFGKTKVH  +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLRAAFEENGG P
Sbjct: 83  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 142

Query: 124 EANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLPQ 168
           E NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 143 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of MC06g2224 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.8e-66
Identity = 118/158 (74.68%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 4   SSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 63
           SS +G++          +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVL
Sbjct: 55  SSGAGTSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 114

Query: 64  EFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 123
           EFL+Y+DQFGKTKVH P+CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG P
Sbjct: 115 EFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTP 174

Query: 124 EANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPS 162
           E NPFGARAVRLYLREVR+ Q++ARGISYEKK+++ PS
Sbjct: 175 EMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPS 212

[Close]

BLAST of MC06g2224 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.8e-66
Identity = 118/158 (74.68%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 4   SSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 63
           SS +G++          +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVL
Sbjct: 55  SSGAGTSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 114

Query: 64  EFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 123
           EFL+Y+DQFGKTKVH P+CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG P
Sbjct: 115 EFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTP 174

Query: 124 EANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPS 162
           E NPFGARAVRLYLREVR+ Q++ARGISYEKK+++ PS
Sbjct: 175 EMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPS 212

[Close]

BLAST of MC06g2224 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 120/143 (83.92%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 20  GAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHA 79
           G   +   SRYE+QKRRDW TFGQYL NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVHA
Sbjct: 13  GGGEAPRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHA 72

Query: 80  PICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLRE 139
             CPF+G P+PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLRE
Sbjct: 73  AGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLRE 132

Query: 140 VRDLQSKARGISYEKK-RKRPPS 162
           VRD Q+KARGI+YEKK RKRPP+
Sbjct: 133 VRDSQAKARGIAYEKKRRKRPPT 155

[Close]

BLAST of MC06g2224 vs. NCBI nr
Match: XP_022155631.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155633.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia])

HSP 1 Score: 350 bits (899), Expect = 7.69e-122
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA 60
           MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA
Sbjct: 1   MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA 60

Query: 61  HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 120
           HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG
Sbjct: 61  HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 120

Query: 121 GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG
Sbjct: 121 GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172

[Close]

BLAST of MC06g2224 vs. NCBI nr
Match: XP_004152053.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_011754 [Cucumis sativus])

HSP 1 Score: 313 bits (801), Expect = 8.32e-107
Identity = 158/177 (89.27%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 1   MEFSSSSGSNMMNNNN-----HLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSS S  N++ NNN     H Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL QQT HG
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHG 177

[Close]

BLAST of MC06g2224 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK20560.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 312 bits (800), Expect = 1.18e-106
Identity = 159/177 (89.83%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MEFSSSSGSNMM---NNN--NHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSSSS  N++   NNN  NH Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPL QQT HG
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHG 177

[Close]

BLAST of MC06g2224 vs. NCBI nr
Match: XP_038888358.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038888359.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 303 bits (777), Expect = 4.20e-103
Identity = 157/180 (87.22%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MEFSSSSGSNMM--NNNNHL-----QGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60
           M+FSSSS  N++  NNNN +     Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLA
Sbjct: 1   MDFSSSSSHNIIINNNNNSINHHQQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60

Query: 61  LSRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120
           LSRCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR
Sbjct: 61  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120

Query: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPS-QLPLPQQTPHG 172
           AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPS QLPL   T HG
Sbjct: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSSQLPLTHHTSHG 180

[Close]

BLAST of MC06g2224 vs. NCBI nr
Match: XP_023532602.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302 bits (774), Expect = 9.13e-103
Identity = 155/174 (89.08%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MEFSSSSGSNMMNNN---NHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRC 60
           M+FS SS SN  NNN   NH   A  SSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRC
Sbjct: 1   MDFSGSS-SNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRC 60

Query: 61  SGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFE 120
           SGAHVLEFLRYLDQFGKTKVH PICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFE
Sbjct: 61  SGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFE 120

Query: 121 ENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPH 171
           ENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PLP   PH
Sbjct: 121 ENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLP--PPH 171

[Close]

BLAST of MC06g2224 vs. ExPASy TrEMBL
Match: A0A6J1DS94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 GN=LOC111022718 PE=3 SV=1)

HSP 1 Score: 350 bits (899), Expect = 3.72e-122
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA 60
           MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA
Sbjct: 1   MEFSSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA 60

Query: 61  HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 120
           HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG
Sbjct: 61  HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 120

Query: 121 GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG
Sbjct: 121 GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172

[Close]

BLAST of MC06g2224 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 313 bits (801), Expect = 4.03e-107
Identity = 158/177 (89.27%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 1   MEFSSSSGSNMMNNNN-----HLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSS S  N++ NNN     H Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL QQT HG
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHG 177

[Close]

BLAST of MC06g2224 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 312 bits (800), Expect = 5.72e-107
Identity = 159/177 (89.83%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MEFSSSSGSNMM---NNN--NHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSSSS  N++   NNN  NH Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPL QQT HG
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHG 177

[Close]

BLAST of MC06g2224 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 312 bits (800), Expect = 5.72e-107
Identity = 159/177 (89.83%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MEFSSSSGSNMM---NNN--NHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSSSS  N++   NNN  NH Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPL QQT HG
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHG 177

[Close]

BLAST of MC06g2224 vs. ExPASy TrEMBL
Match: A0A6J1K523 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491256 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 9.01e-102
Identity = 153/180 (85.00%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MEFSSSSGS--NMMNNNN------HLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPL 60
           M+FS SS +  N+ NNNN      H   A  SSSSSRYENQKRRDWKTFGQYLNNHRPPL
Sbjct: 1   MDFSGSSSNSININNNNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL 60

Query: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120
           ALSRCSGAHVLEFLRYLDQFGKTKVH PICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL
Sbjct: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120

Query: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172
           RAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISY+KKRKRPPSQ PLP   PH 
Sbjct: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLP--PPHA 178

[Close]

BLAST of MC06g2224 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-68
Identity = 130/178 (73.03%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 1   MEFSSSSGS----NMMNNNNHLQGAAT--------------SSSSSRYENQKRRDWKTFG 60
           ME SS+ G     N+++NN+     AT              S++SSRYENQKRRDW TFG
Sbjct: 8   MEGSSAYGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFG 67

Query: 61  QYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAW 120
           QYL NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH  IC FYG PNPPAPCPCPLRQAW
Sbjct: 68  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAW 127

Query: 121 GSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 161
           GSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P
Sbjct: 128 GSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of MC06g2224 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.9 bits (642), Expect = 3.7e-67
Identity = 123/165 (74.55%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 4   SSSSGSNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 63
           ++++ +   ++++   G + ++  SRYENQKRRDW TFGQYL NHRPPL+LSRCSGAHVL
Sbjct: 23  AAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 82

Query: 64  EFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 123
           EFLRYLDQFGKTKVH  +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLRAAFEENGG P
Sbjct: 83  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 142

Query: 124 EANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLPQ 168
           E NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 143 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of MC06g2224 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-66
Identity = 125/171 (73.10%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 9   SNMMNNNNHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRY 68
           S+  N N +     T  SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVLEFLRY
Sbjct: 5   SHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRY 64

Query: 69  LDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPF 128
           LDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPF
Sbjct: 65  LDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPF 124

Query: 129 GARAVRLYLREVRDLQSKARGISYEKKRKR---------PPSQLPLPQQTP 171
           G+RAVRL+LREVRD Q+KARG+SYEKKRKR         PP QL   QQ P
Sbjct: 125 GSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQP 175

[Close]

BLAST of MC06g2224 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 122/178 (68.54%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 6   SSGSNMMNNNNHLQGAATSS-----SSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGA 65
           S   N  N N  L     SS     SSSRYENQKRRDW TF QYL NH PPL+L+ CSGA
Sbjct: 5   SQNHNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGA 64

Query: 66  HVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 125
           HVL+FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENG
Sbjct: 65  HVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENG 124

Query: 126 GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR----------PPSQLPLPQQ 169
           G PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR          P SQ PLPQQ
Sbjct: 125 GAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQ 182

[Close]

BLAST of MC06g2224 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-60
Identity = 104/138 (75.36%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 25  SSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHAPICPF 84
           ++ SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP+
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 85  YGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQ 144
           +G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 145 SKARGISYE-KKRKRPPS 162
           +KARGI YE KKRKRPP+
Sbjct: 147 AKARGIPYEKKKRKRPPT 164

The following BLAST results are available for this feature:

BLAST of MC06g2224 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	3.6e-67	73.03	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	5.2e-66	74.55	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	6.8e-66	74.68	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	6.8e-66	74.68	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2YG32	1.2e-65	83.92	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of MC06g2224 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155631.1	7.69e-122	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155...	[more]
XP_004152053.1	8.32e-107	89.27	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothe...	[more]
XP_008447415.1	1.18e-106	89.83	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_038888358.1	4.20e-103	87.22	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888835...	[more]
XP_023532602.1	9.13e-103	89.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC06g2224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DS94	3.72e-122	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 G...	[more]
A0A0A0L7E1	4.03e-107	89.27	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A5D3DAV8	5.72e-107	89.83	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	5.72e-107	89.83	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1K523	9.01e-102	85.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MC06g2224 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	2.5e-68	73.03	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.7e-67	74.55	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.4e-66	73.10	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.4e-63	68.54	Protein of unknown function (DUF640)	[more]
AT1G07090.1	4.3e-60	75.36	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 24..142 e-value: 6.6E-65 score: 217.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 29..156 score: 83.405052
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..172
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 8..168
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 8..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2224.1	MC06g2224.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus