MC06g2201 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g2201
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionF-box domain-containing protein
LocationMC06: 29398094 .. 29398258 (+)
RNA-Seq ExpressionMC06g2201
SyntenyMC06g2201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCAACTCATCAAAGTCTTTGAGGATGGGAATATCTTATGTCTTTTTGATGGAATTGATTTTATCTTGTATGATACGAAAACTAGGAGGATAGAGATATTGGATCAAGTTGTTGGAATTAAGAAACGTTCATATGTTTTTCAAATTGAGTCCTTAAGTTTTCAT

mRNA sequence

CTTCAACTCATCAAAGTCTTTGAGGATGGGAATATCTTATGTCTTTTTGATGGAATTGATTTTATCTTGTATGATACGAAAACTAGGAGGATAGAGATATTGGATCAAGTTGTTGGAATTAAGAAACGTTCATATGTTTTTCAAATTGAGTCCTTAAGTTTTCAT

Coding sequence (CDS)

CTTCAACTCATCAAAGTCTTTGAGGATGGGAATATCTTATGTCTTTTTGATGGAATTGATTTTATCTTGTATGATACGAAAACTAGGAGGATAGAGATATTGGATCAAGTTGTTGGAATTAAGAAACGTTCATATGTTTTTCAAATTGAGTCCTTAAGTTTTCAT

Protein sequence

LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEILDQVVGIKKRSYVFQIESLSFH
Homology
BLAST of MC06g2201 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 5.26e-08
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           LQLIK  EDGNILCL  G+  ILYD KT   E+L DQ   IKK  +V+QI+S +F+
Sbjct: 319 LQLIKACEDGNILCLCAGLYLILYDPKTETTELLTDQDFEIKKHMWVYQIDSFNFN 374

BLAST of MC06g2201 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 7.20e-08
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           LQLIK  EDGNILCL+ GI  ILYD  T+ +EIL +Q   IK+  +V QIES SF+
Sbjct: 318 LQLIKFCEDGNILCLYAGILLILYDPSTQTVEILTNQDFEIKEAMWVHQIESFSFN 373

BLAST of MC06g2201 vs. NCBI nr
Match: KGN64030.1 (hypothetical protein Csa_013491 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.36e-07
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 2   QLIKVFEDGNILCLFDGIDFILYDTKTRRIEILDQVVGIKKRSY-VFQIESLSF 54
           QLIK ++DG ILCLF     +LYDTKTR++E L QV GI KRS+ + Q++S+ F
Sbjct: 376 QLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFRICQMDSIHF 429

BLAST of MC06g2201 vs. NCBI nr
Match: XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.66e-06
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           LQL+K  EDG+ILCL  GI  I+YD KT+++EIL DQ   IK+  +  QIES SF+
Sbjct: 318 LQLVKFCEDGSILCLCAGILLIVYDPKTQQMEILTDQDFEIKEGMWFHQIESFSFN 373

BLAST of MC06g2201 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 2.04e-05
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           L  IK  EDG ILCL  G+  ILYD KT+  EIL DQ V ++K  +V  I+S +F+
Sbjct: 317 LDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHLHVHHIDSFNFN 372

BLAST of MC06g2201 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.49e-08
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           LQLIK  EDGNILCL+ GI  ILYD  T+ +EIL +Q   IK+  +V QIES SF+
Sbjct: 318 LQLIKFCEDGNILCLYAGILLILYDPSTQTVEILTNQDFEIKEAMWVHQIESFSFN 373

BLAST of MC06g2201 vs. ExPASy TrEMBL
Match: A0A0A0LQ77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G038970 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.60e-08
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 2   QLIKVFEDGNILCLFDGIDFILYDTKTRRIEILDQVVGIKKRSY-VFQIESLSF 54
           QLIK ++DG ILCLF     +LYDTKTR++E L QV GI KRS+ + Q++S+ F
Sbjct: 376 QLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFRICQMDSIHF 429

BLAST of MC06g2201 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.03e-07
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           LQL+K  EDG+ILCL  GI  I+YD KT+++EIL DQ   IK+  +  QIES SF+
Sbjct: 318 LQLVKFCEDGSILCLCAGILLIVYDPKTQQMEILTDQDFEIKEGMWFHQIESFSFN 373

BLAST of MC06g2201 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.03e-07
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           LQL+K  EDG+ILCL  GI  I+YD KT+++EIL DQ   IK+  +  QIES SF+
Sbjct: 318 LQLVKFCEDGSILCLCAGILLIVYDPKTQQMEILTDQDFEIKEGMWFHQIESFSFN 373

BLAST of MC06g2201 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.86e-06
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1   LQLIKVFEDGNILCLFDGIDFILYDTKTRRIEIL-DQVVGIKKRSYVFQIESLSFH 55
           L  IK  EDG ILCL  G+  ILYD KT+  EIL DQ V ++K  +V  I+S +F+
Sbjct: 317 LDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHLHVHHIDSFNFN 372

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038880514.15.26e-0857.14putative F-box protein At1g46984 [Benincasa hispida][more]
XP_004135796.17.20e-0858.93putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot... [more]
KGN64030.11.36e-0755.56hypothetical protein Csa_013491 [Cucumis sativus][more]
XP_008450717.11.66e-0655.36PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ... [more]
TYK13067.12.04e-0550.00putative F-box protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0M1M53.49e-0858.93F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ... [more]
A0A0A0LQ776.60e-0855.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G038970 PE=4 SV=1[more]
A0A5D3CIX98.03e-0755.36Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A1S3BQV88.03e-0755.36putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... [more]
A0A5D3CM949.86e-0650.00Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g2201.1MC06g2201.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane