MC06g2200 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2200
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Exonuclease domain-containing protein
Location	MC06: 29394649 .. 29397264 (-)
RNA-Seq Expression	MC06g2200
Synteny	MC06g2200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTAAAAATCCAAGAAGCAGTTTTTTCGGACATCCATGTCTCCGGAATTCACTTCTCCTTCTTCTTCCTCGCGATTTACAGCCTCTCTTTATCTCTTTAACTTACTTTCTTCTGTTGGGTTTTCAAATGCGGCTTAATCCTTCCTCGGATTTGCTTTGAGGCAAGTTTCTCTCTCTTTGCTTTGCAAGTTTCCTGTTTCTGCATTGAGAAAATGGTTGACAATTCGAAAAGGGGAAGTTGTATTCTTTTGAAATTTGGATGTAAATAGTTGGATGTTGGTCTGTTAGAAGAGTGGATCGTCCAACAATTTAGGGGTCCATTATACCGTATCCCCTTTTCCCAATCTCATGCAGTAGTGCTTTATTTGGAAATTTTGAGTGCGATGCGATCAATAAGTTCTCATTGTTTGATTTCATATTTCTTTGGTTTTTAGTAATTAATGATGGGATATTTCTCTTTATGGAATTTTGGGGAAGGGCTGGAGGATCGAGATGGGGTGGGAGTTGGAAATATTCTTGGCTTAATAGGATTGTATTTAAAGTGTTTGTTAAAATGCCTGAATGAGCTCGTGAAAGATGAATCCTAATTTTTGTCTTTGACATGATTGTGTTTGTTCATTTGTACATTTGGGGCTTTATCGTTATTGTTTATTCGTTCTTCTGGTGATTCTGTTTGATAATCAATGTGGAGAAGTTGAAGTTGATCTCCTTCTTTTTTTAATTTTCTTGTTTTGATATGGTCTTTTACATTGTTCCTCGCCCATATCCTTCAGGTTGAAGACTATTGCATCCGATGCCGAATTTGTTTTGGGTTTTCTGTCTAGTTTTCCTCTAGTTGTGATTTCAAATGATAACAGTTCCAATGTGCTTTTCGATCTTGAGAGTTCCGAAATTTGGAGTCCACACATTAGCTAATTTTTGGAGGACAAACTTCCATCCCCTGAACAGGAATTATGGTCATAGTTCTTGGTATGATCAGCTTTGTTTTAGAATCTATAACCTTGAAGGAGGGCAAAATAAGAGATGGACCAGAAAATCGATAACCACGAAAGCAGGGAGGAAAGTGAAGAACAACCCCAGCAGTAAACCAAGTGATATCAGAAATGAAATTTTAGAGGGATCGGTTTCAACAAGCTGTACAGTTAGCATTAATAAGACTGAGAAAAGTGAAACCCAGAAACTTCAGTATTGTGATATTCAGCAAACATTTACTAAGAAAAAGGAGTTGACTAGGCCGGTGACAGTTATAGCCTTTGACATTGAAACAACAGGTTTTAGTAGAAAAAAGGATAGGATAGTGGAAATAGCCTTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCTCTTGTACATGGCATTACAAGCCGTATGGTCAGCAGACCCGATGTTCCAAGGTATCAAAAAATGCTTATTGTTATAGTCTCATTCCCCTACTGTTTTACTATCCAGTTCAGTGCTAGTTGAGACAGATCTTTAACCATATATAATTTGAATATTTGATAATGTTTGCTAGGTCCATCCATTCAATTTTTTTTTAAGTAATTAGCATTAATTATATGTAACGTGAAATTTGCAGAGTTGACAATCATATCTAAACGTTTCTTTTCTATGTTCATTTAGGATGAAGGATCTTATACCAATTTTATTACAATTTGTTTTAAGCCGTCAGAAACCTGATGGTTATATATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTCTGCTCAATGAATTCAGCCGCTGCTCCTTCGACATTCCTCAAGATTGGCTATTTCTTGATAATATGATTTTAGCCCGTCAACTGATGATATCCTCAGGTTAGTTTTCCCTTTGCACATATTTTCTTGCTCTGGCTTTTCTGTAGATAAAAAGATTGATGTGATATAGTGTAATATGGATGGTAATGTCGTGATCAGATTCAAAGCTTTCAAAAATTTCGTTACAAGCTCTTCGCGAGTATTACAGTATTCCGCTGGTGGGTTCAGCTCACAGAGCAATGTCGGATGTGATGTCGTTGTCGCTGATTCTTCAGAGGCTTACTTTCGACCTCAAGCTGGAAATCCCCGATCTCATTGAAAGATCTTTCACTGCTTCAGACCTGATTAAGAAGAACAAGGACTAGTTTTTAAGTTATATGCATAGATCAATCTTAACTTAGTGATCAAGCTGTGGTCCTGTTGTAATGTTATTTATTAATTGTATTGTAACTTTTGTTCATTCTTATCAGCAAAATATTGGGCCATTTTATTTGTGCCAATCAGATTTGTCTTGATATCCATATTCTCCAAAAAAAAAAAAAACTAGTGCTGAATTGGATTATCATGACAGAAAATCTTTTGTTTTCTTGTTTTGAATGGATACTTGATGAAACGAGAATTGACAGAGTTTATGAAGAAAGATGAAAAGGGGATCTGCGTTCTGTTCTGATGTTGAAATGGCTGAACTGAACTACTTTTGAGGCGTTTGTGGCAAGGAAGGAATTATATGGAAATGTTTGTAAACAGTAAATATACATAAAGATTCAATATTTCGACCCTTAATTTTTAGATTTCTAATACATCTACAT

mRNA sequence

GAACTAAAAATCCAAGAAGCAGTTTTTTCGGACATCCATGTCTCCGGAATTCACTTCTCCTTCTTCTTCCTCGCGATTTACAGCCTCTCTTTATCTCTTTAACTTACTTTCTTCTGTTGGGTTTTCAAATGCGGCTTAATCCTTCCTCGGATTTGCTTTGAGGTTGAAGACTATTGCATCCGATGCCGAATTTGTTTTGGGTTTTCTGTCTAGTTTTCCTCTAGTTGTGATTTCAAATGATAACAGTTCCAATGTGCTTTTCGATCTTGAGAGTTCCGAAATTTGGAGTCCACACATTAGCTAATTTTTGGAGGACAAACTTCCATCCCCTGAACAGGAATTATGGTCATAGTTCTTGGTATGATCAGCTTTGTTTTAGAATCTATAACCTTGAAGGAGGGCAAAATAAGAGATGGACCAGAAAATCGATAACCACGAAAGCAGGGAGGAAAGTGAAGAACAACCCCAGCAGTAAACCAAGTGATATCAGAAATGAAATTTTAGAGGGATCGGTTTCAACAAGCTGTACAGTTAGCATTAATAAGACTGAGAAAAGTGAAACCCAGAAACTTCAGTATTGTGATATTCAGCAAACATTTACTAAGAAAAAGGAGTTGACTAGGCCGGTGACAGTTATAGCCTTTGACATTGAAACAACAGGTTTTAGTAGAAAAAAGGATAGGATAGTGGAAATAGCCTTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCTCTTGTACATGGCATTACAAGCCGTATGGTCAGCAGACCCGATGTTCCAAGGATGAAGGATCTTATACCAATTTTATTACAATTTGTTTTAAGCCGTCAGAAACCTGATGGTTATATATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTCTGCTCAATGAATTCAGCCGCTGCTCCTTCGACATTCCTCAAGATTGGCTATTTCTTGATAATATGATTTTAGCCCGTCAACTGATGATATCCTCAGATTCAAAGCTTTCAAAAATTTCGTTACAAGCTCTTCGCGAGTATTACAGTATTCCGCTGGTGGGTTCAGCTCACAGAGCAATGTCGGATGTGATGTCGTTGTCGCTGATTCTTCAGAGGCTTACTTTCGACCTCAAGCTGGAAATCCCCGATCTCATTGAAAGATCTTTCACTGCTTCAGACCTGATTAAGAAGAACAAGGACTAGTTTTTAAGTTATATGCATAGATCAATCTTAACTTAGTGATCAAGCTGTGGTCCTGTTGTAATGTTATTTATTAATTGTATTGTAACTTTTGTTCATTCTTATCAGCAAAATATTGGGCCATTTTATTTGTGCCAATCAGATTTGTCTTGATATCCATATTCTCCAAAAAAAAAAAAAACTAGTGCTGAATTGGATTATCATGACAGAAAATCTTTTGTTTTCTTGTTTTGAATGGATACTTGATGAAACGAGAATTGACAGAGTTTATGAAGAAAGATGAAAAGGGGATCTGCGTTCTGTTCTGATGTTGAAATGGCTGAACTGAACTACTTTTGAGGCGTTTGTGGCAAGGAAGGAATTATATGGAAATGTTTGTAAACAGTAAATATACATAAAGATTCAATATTTCGACCCTTAATTTTTAGATTTCTAATACATCTACAT

Coding sequence (CDS)

ATGATAACAGTTCCAATGTGCTTTTCGATCTTGAGAGTTCCGAAATTTGGAGTCCACACATTAGCTAATTTTTGGAGGACAAACTTCCATCCCCTGAACAGGAATTATGGTCATAGTTCTTGGTATGATCAGCTTTGTTTTAGAATCTATAACCTTGAAGGAGGGCAAAATAAGAGATGGACCAGAAAATCGATAACCACGAAAGCAGGGAGGAAAGTGAAGAACAACCCCAGCAGTAAACCAAGTGATATCAGAAATGAAATTTTAGAGGGATCGGTTTCAACAAGCTGTACAGTTAGCATTAATAAGACTGAGAAAAGTGAAACCCAGAAACTTCAGTATTGTGATATTCAGCAAACATTTACTAAGAAAAAGGAGTTGACTAGGCCGGTGACAGTTATAGCCTTTGACATTGAAACAACAGGTTTTAGTAGAAAAAAGGATAGGATAGTGGAAATAGCCTTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCTCTTGTACATGGCATTACAAGCCGTATGGTCAGCAGACCCGATGTTCCAAGGATGAAGGATCTTATACCAATTTTATTACAATTTGTTTTAAGCCGTCAGAAACCTGATGGTTATATATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTCTGCTCAATGAATTCAGCCGCTGCTCCTTCGACATTCCTCAAGATTGGCTATTTCTTGATAATATGATTTTAGCCCGTCAACTGATGATATCCTCAGATTCAAAGCTTTCAAAAATTTCGTTACAAGCTCTTCGCGAGTATTACAGTATTCCGCTGGTGGGTTCAGCTCACAGAGCAATGTCGGATGTGATGTCGTTGTCGCTGATTCTTCAGAGGCTTACTTTCGACCTCAAGCTGGAAATCCCCGATCTCATTGAAAGATCTTTCACTGCTTCAGACCTGATTAAGAAGAACAAGGACTAG

Protein sequence

MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

Homology

[Close]

BLAST of MC06g2200 vs. ExPASy Swiss-Prot
Match: Q682U6 (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DPD1 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.6e-63
Identity = 146/332 (43.98%), Postives = 211/332 (63.55%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           +T       N  SS        +L G+V  +  +     E+S T+   + ++QQ   + K
Sbjct: 61  STTTQGSRSNTKSS--------VLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGI 185
           +L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDI 245
            + MV RP+VPRM++LIPI L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL 305
           P +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSS-SLEALADYYSLTREGDAHRALSDVLLLSKVF 300

Query: 306 QRLTFDLKLEIPDLIERSFTASDL---IKKNK 332
           Q+LT DLKL + DL+ R  TASD+   + KNK
Sbjct: 301 QKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314

[Close]

BLAST of MC06g2200 vs. ExPASy Swiss-Prot
Match: Q895K2 (DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=polC PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-12
Identity = 64/202 (31.68%), Postives = 99/202 (49.01%), Query Frame = 0


Query: 134 IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVS 193
           + FDIETTGFS K D+I+EI    +  G+    + T +NPE  IP  ++   GI   MV 
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVK 473

Query: 194 RPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLF 253
             D P++++++P  + F+          +LVAHNA  FDV F+        F I  +   
Sbjct: 474 --DAPKIEEVLPKFIDFIEDS-------ILVAHNA-NFDVSFIKKNCK--DFGIHFNNPI 533

Query: 254 LDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRLTFDLK 313
           LD + L + L      +L +  L  + ++  IPL+ + HRA+ D  +   IL +   DLK
Sbjct: 534 LDTIPLCKFLY----PELKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFEDLK 593

Query: 314 ----LEIPDLIERSFTASDLIK 329
               + +  L E  F   D+ K
Sbjct: 594 DKEIMNLNMLNEEYFKNQDIKK 598

[Close]

BLAST of MC06g2200 vs. ExPASy Swiss-Prot
Match: Q8XJR3 (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=polC PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-10
Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 134 IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVS 193
           + FDIETTGFS K D+I+EI    L  GE   +F T ++P+  IP  +     IT  MV+
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495

Query: 194 RPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLF 253
               P + +++P  ++FV       G  +LVAHNA  FDV F+          +      
Sbjct: 496 --GQPTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 555

Query: 254 LDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQ 304
           +D + LAR L       L K+ L  + ++  I L  + HRA+ D  + + IL+
Sbjct: 556 MDTVPLARYLY----PDLKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591

[Close]

BLAST of MC06g2200 vs. ExPASy Swiss-Prot
Match: Q8RA32 (DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=polC PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-08
Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 0


Query: 122 TKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSL 181
           T + E +     + FDIETTG S   D I+EI    +   +   TF+T +NP+  I + +
Sbjct: 377 TGESEASLEGEFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFI 436

Query: 182 --VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFS 241
             + GI   MV   D P +++++P  L+F           +LVAHNA  FDV F+ ++  
Sbjct: 437 TKLTGIDESMVK--DAPLIEEVLPKFLEFAKG-------AVLVAHNA-NFDVSFIKSKAK 496

Query: 242 RCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSL 301
           +    +      LD + L+R L       L    L  L E++ + L+   HRA+ D  + 
Sbjct: 497 KLGLTVEN--TVLDTLELSRHLY----QDLKNYKLDTLAEFFEVKLL-HHHRAVEDAKAT 546

Query: 302 SLILQRL 306
           + I  ++
Sbjct: 557 AEIFIKM 546

[Close]

BLAST of MC06g2200 vs. ExPASy Swiss-Prot
Match: Q8EQU6 (DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=polC PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-08
Identity = 55/177 (31.07%), Postives = 88/177 (49.72%), Query Frame = 0


Query: 132 TVIAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRM 191
           T + FD+ETTG S   D I+E+A   + GGE    F++  NP   +  + +   GIT  M
Sbjct: 413 TFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDRFESFANPHHALSQTTIDLTGITDDM 472

Query: 192 VSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDW 251
           V+  D P + D++     ++       G  +LVAHNA +FD+ FL   F R  ++   + 
Sbjct: 473 VN--DAPEVADVLKDFHTWM-------GNDILVAHNA-SFDMGFLNQGFQRIDYEKASNP 532

Query: 252 LFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL 306
           + +D + LAR L+     +L    L  L ++  I L    HRA+ D  +   +L +L
Sbjct: 533 V-VDTLELARFLL----PELRNHRLNTLCKHLDIELT-QHHRAIYDAEATGYLLWKL 573

[Close]

BLAST of MC06g2200 vs. NCBI nr
Match: XP_022135594.1 (exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 654 bits (1686), Expect = 1.69e-236
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
           FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332
           ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

[Close]

BLAST of MC06g2200 vs. NCBI nr
Match: XP_023515555.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 557 bits (1435), Expect = 2.99e-198
Identity = 281/331 (84.89%), Postives = 303/331 (91.54%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQNKRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCT+SINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTISINKSEKNGTQKLQCCNIQET 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
            TK KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 ITKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           S DIP +WLF DN++LARQLM S+DSK+ KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKIKKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNK 331
           ILQRLTFDLKL IPDLIERSFT SDLI K K
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of MC06g2200 vs. NCBI nr
Match: KAG6590475.1 (Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024006.1 Exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 554 bits (1427), Expect = 4.94e-197
Identity = 280/331 (84.59%), Postives = 303/331 (91.54%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
             K KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           S DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNK 331
           ILQRLTFDLKL IPDLIERSFT SDLI K K
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of MC06g2200 vs. NCBI nr
Match: XP_022961373.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 552 bits (1422), Expect = 2.86e-196
Identity = 279/331 (84.29%), Postives = 302/331 (91.24%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FR YNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
             K KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           S DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNK 331
           ILQRLTFDLKL IPDLIERSFT SDLI K K
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of MC06g2200 vs. NCBI nr
Match: XP_022968752.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 551 bits (1419), Expect = 8.18e-196
Identity = 281/331 (84.89%), Postives = 300/331 (90.63%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MIT  MCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRK K NPSSKPS+IRNEILE SVSTSCTVSINK+EK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
             K KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQFV SRQKPDGY+LLVAHNAR FDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           S DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNK 331
           ILQRLTFDLKL IPDLIERSFT SDLI K K
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of MC06g2200 vs. ExPASy TrEMBL
Match: A0A6J1C1V8 (exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007515 PE=4 SV=1)

HSP 1 Score: 654 bits (1686), Expect = 8.17e-237
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
           FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332
           ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

[Close]

BLAST of MC06g2200 vs. ExPASy TrEMBL
Match: A0A6J1HDU6 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461962 PE=4 SV=1)

HSP 1 Score: 552 bits (1422), Expect = 1.38e-196
Identity = 279/331 (84.29%), Postives = 302/331 (91.24%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FR YNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
             K KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           S DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNK 331
           ILQRLTFDLKL IPDLIERSFT SDLI K K
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of MC06g2200 vs. ExPASy TrEMBL
Match: A0A6J1HUD7 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467897 PE=4 SV=1)

HSP 1 Score: 551 bits (1419), Expect = 3.96e-196
Identity = 281/331 (84.89%), Postives = 300/331 (90.63%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60
           MIT  MCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRK K NPSSKPS+IRNEILE SVSTSCTVSINK+EK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180
             K KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQFV SRQKPDGY+LLVAHNAR FDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300
           S DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNK 331
           ILQRLTFDLKL IPDLIERSFT SDLI K K
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of MC06g2200 vs. ExPASy TrEMBL
Match: A0A1S4DY73 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492132 PE=4 SV=1)

HSP 1 Score: 494 bits (1273), Expect = 5.61e-174
Identity = 249/326 (76.38%), Postives = 277/326 (84.97%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MCFSI R PKFGV  LAN WR NFHPLNRN+GHS WYDQLCFRIYNLEGGQNKRWTRKSI
Sbjct: 1   MCFSIFRFPKFGVPILANLWRENFHPLNRNHGHSCWYDQLCFRIYNLEGGQNKRWTRKSI 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           TTKAG K K NPSSKP++I NEIL+ S+S SCTV++NK+EKS TQKLQYCDIQ T  K K
Sbjct: 61  TTKAGGKAKTNPSSKPTNITNEILQESMSASCTVNVNKSEKSGTQKLQYCDIQPTIIKSK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGIT 185
           E   PVTVI FDIETTGFSR  DRIVEIAFQDLSGGENSTFQTLI+P+CYI NS +HGIT
Sbjct: 121 EFIHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLIDPQCYITNSSIHGIT 180

Query: 186 SRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIP 245
           + MV+   VPRM++LIPI+LQFV SRQKP GY+LLVAHNARTFDVPFLL+EFSR S DIP
Sbjct: 181 NNMVASCGVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLHEFSRYSIDIP 240

Query: 246 QDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL 305
           QDWLFLD M LARQLM  SDSK++KISL+AL EYY I + G AHRA+ DV+SLSLILQRL
Sbjct: 241 QDWLFLDTMTLARQLMKLSDSKITKISLEALCEYYGIEVDGEAHRALPDVISLSLILQRL 300

Query: 306 TFDLKLEIPDLIERSFTASDLIKKNK 331
           TFDLKL++ DL+ER+FT  DLI K K
Sbjct: 301 TFDLKLDVSDLVERAFTPLDLINKKK 326

[Close]

BLAST of MC06g2200 vs. ExPASy TrEMBL
Match: A0A0A0LVY3 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1)

HSP 1 Score: 487 bits (1253), Expect = 6.20e-171
Identity = 246/326 (75.46%), Postives = 273/326 (83.74%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MC SI R PK+GV  LAN WR NFHPLNRN+GH+ WYDQLCFRIYNLEGG+NKRWTRKSI
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           TTKAG K K NPSSKP++IRNEIL+ S+  SCTV+INK+EKSETQKLQYCDIQ T  K K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGIT 185
           E    VTVI FDIETTGFSR  DRIVEIAFQDLSGGENSTFQTLINP+CYI NS +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 SRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIP 245
           +RMV  P VPRM++LIPI+LQFV SRQKP GY+LLVAHNARTFDVPFLL+EFSR S DIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 QDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL 305
            +WLF D M LARQLM  SDSK++KI+LQAL EYY I L G AHRA+SDV  LS ILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLEIPDLIERSFTASDLIKKNK 331
           TFDLKL+I DL+ER+FT  DLI K K
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of MC06g2200 vs. TAIR 10
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-64
Identity = 146/332 (43.98%), Postives = 211/332 (63.55%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           +T       N  SS        +L G+V  +  +     E+S T+   + ++QQ   + K
Sbjct: 61  STTTQGSRSNTKSS--------VLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGI 185
           +L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDI 245
            + MV RP+VPRM++LIPI L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL 305
           P +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSS-SLEALADYYSLTREGDAHRALSDVLLLSKVF 300

Query: 306 QRLTFDLKLEIPDLIERSFTASDL---IKKNK 332
           Q+LT DLKL + DL+ R  TASD+   + KNK
Sbjct: 301 QKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314

[Close]

BLAST of MC06g2200 vs. TAIR 10
Match: AT5G26940.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-64
Identity = 146/332 (43.98%), Postives = 211/332 (63.55%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           +T       N  SS        +L G+V  +  +     E+S T+   + ++QQ   + K
Sbjct: 61  STTTQGSRSNTKSS--------VLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGI 185
           +L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDI 245
            + MV RP+VPRM++LIPI L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL 305
           P +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSS-SLEALADYYSLTREGDAHRALSDVLLLSKVF 300

Query: 306 QRLTFDLKLEIPDLIERSFTASDL---IKKNK 332
           Q+LT DLKL + DL+ R  TASD+   + KNK
Sbjct: 301 QKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314

[Close]

BLAST of MC06g2200 vs. TAIR 10
Match: AT5G26940.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-64
Identity = 146/332 (43.98%), Postives = 211/332 (63.55%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           +T       N  SS        +L G+V  +  +     E+S T+   + ++QQ   + K
Sbjct: 61  STTTQGSRSNTKSS--------VLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGI 185
           +L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDI 245
            + MV RP+VPRM++LIPI L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL 305
           P +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSS-SLEALADYYSLTREGDAHRALSDVLLLSKVF 300

Query: 306 QRLTFDLKLEIPDLIERSFTASDL---IKKNK 332
           Q+LT DLKL + DL+ R  TASD+   + KNK
Sbjct: 301 QKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314

[Close]

BLAST of MC06g2200 vs. TAIR 10
Match: AT5G26940.4 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-64
Identity = 146/332 (43.98%), Postives = 211/332 (63.55%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSI 65
           MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQTFTKKK 125
           +T       N  SS        +L G+V  +  +     E+S T+   + ++QQ   + K
Sbjct: 61  STTTQGSRSNTKSS--------VLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGI 185
           +L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDI 245
            + MV RP+VPRM++LIPI L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL 305
           P +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSS-SLEALADYYSLTREGDAHRALSDVLLLSKVF 300

Query: 306 QRLTFDLKLEIPDLIERSFTASDL---IKKNK 332
           Q+LT DLKL + DL+ R  TASD+   + KNK
Sbjct: 301 QKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314

The following BLAST results are available for this feature:

BLAST of MC06g2200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682U6	4.6e-63	43.98	Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q895K2	4.9e-12	31.68	DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) ...	[more]
Q8XJR3	2.0e-10	32.95	DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=...	[more]
Q8RA32	1.5e-08	28.88	DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongens...	[more]
Q8EQU6	5.6e-08	31.07	DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP...	[more]

BLAST of MC06g2200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135594.1	1.69e-236	100.00	exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia]	[more]
XP_023515555.1	2.99e-198	84.89	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]	[more]
KAG6590475.1	4.94e-197	84.59	Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma s...	[more]
XP_022961373.1	2.86e-196	84.29	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374...	[more]
XP_022968752.1	8.18e-196	84.89	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1...	[more]

BLAST of MC06g2200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1V8	8.17e-237	100.00	exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1HDU6	1.38e-196	84.29	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUD7	3.96e-196	84.89	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S4DY73	5.61e-174	76.38	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LVY3	6.20e-171	75.46	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080...	[more]

BLAST of MC06g2200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26940.1	3.3e-64	43.98	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.2	3.3e-64	43.98	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.3	3.3e-64	43.98	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.4	3.3e-64	43.98	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 132..311 e-value: 5.7E-26 score: 102.3
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 134..297 e-value: 3.8E-19 score: 69.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 131..312 e-value: 1.3E-40 score: 141.3
None	No IPR available	PANTHER	PTHR13058:SF23	POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED	coord: 3..328
None	No IPR available	CDD	cd06127	DEDDh	coord: 134..303 e-value: 2.14868E-38 score: 132.039
IPR040393	Three-prime repair exonuclease 1/2	PANTHER	PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	coord: 3..328
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 132..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2200.1	MC06g2200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000738	DNA catabolic process, exonucleolytic
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008408	3'-5' exonuclease activity