MC06g2157 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2157
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	BnaC03g34390D protein
Location	MC06: 28992481 .. 28992735 (-)
RNA-Seq Expression	MC06g2157
Synteny	MC06g2157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGCAACAGGCAGAAGAAATCTCACTCATTCTCCATCTTCAGCTTCTTCAAATCCAAAAGGAGTAGAAAAGGAGACCATTACGACAGCTGGGACGACGTGTCGTGCCCCAACAAGGTGTGGCCAAGCGACGCTGACAAATGCCACCATTGGATCGCCGAGCCTGGCATCGACAGAAAAGCCAAAGATTACATCGATAGGATTCATCGGAACCGTGTATTGGAGACCGAACGCCAAACCTTTACGGTCCAACCC

mRNA sequence

GGAGGCAACAGGCAGAAGAAATCTCACTCATTCTCCATCTTCAGCTTCTTCAAATCCAAAAGGAGTAGAAAAGGAGACCATTACGACAGCTGGGACGACGTGTCGTGCCCCAACAAGGTGTGGCCAAGCGACGCTGACAAATGCCACCATTGGATCGCCGAGCCTGGCATCGACAGAAAAGCCAAAGATTACATCGATAGGATTCATCGGAACCGTGTATTGGAGACCGAACGCCAAACCTTTACGGTCCAACCC

Coding sequence (CDS)

GGAGGCAACAGGCAGAAGAAATCTCACTCATTCTCCATCTTCAGCTTCTTCAAATCCAAAAGGAGTAGAAAAGGAGACCATTACGACAGCTGGGACGACGTGTCGTGCCCCAACAAGGTGTGGCCAAGCGACGCTGACAAATGCCACCATTGGATCGCCGAGCCTGGCATCGACAGAAAAGCCAAAGATTACATCGATAGGATTCATCGGAACCGTGTATTGGAGACCGAACGCCAAACCTTTACGGTCCAACCC

Protein sequence

GGNRQKKSHSFSIFSFFKSKRSRKGDHYDSWDDVSCPNKVWPSDADKCHHWIAEPGIDRKAKDYIDRIHRNRVLETERQTFTVQP

Homology

[Close]

BLAST of MC06g2157 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (373), Expect = 2.45e-44
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYDSWDDVSCPNKVWPSDADKCHHWIAEPGIDR 60
          GGN+ KKSHS FS F FFKSKR+RKG+HY+  D++SCP KVWPSDADKCH W+AEPGIDR
Sbjct: 2  GGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-DELSCPRKVWPSDADKCHRWVAEPGIDR 61

Query: 61 KAKDYIDRIHRNRVLETERQTFTVQP 85
          KAKDYIDRIHRNRVLETERQT TV P
Sbjct: 62 KAKDYIDRIHRNRVLETERQTVTVAP 86

[Close]

BLAST of MC06g2157 vs. NCBI nr
Match: KGN65989.1 (hypothetical protein Csa_006868 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 5.88e-42
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  GGNRQKKSH--SFSIFSFFKSKRS-RKGDHY-------DSWDDVSCPNKVWPSDADKCHH 60
          GGNRQKKSH  SFS    FKSKRS RKGDHY       +SW+D SCP+KVWPSDADKCH 
Sbjct: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61

Query: 61 WIAEPGIDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          W+AEPGIDRKAKDYIDRIHRNRV ET RQT T+ P
Sbjct: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 96

[Close]

BLAST of MC06g2157 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 7.86e-42
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYD---SW-DDVSCPNKVWPSDADKCHHWIAEP 60
          GGNRQKKSHS FSIFSFFKSKR RKGDHYD   +W D++   NKVWPSD DK HHWIAEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 61 GIDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          GIDRKAKDYIDRI+RNRV E+ERQT T+ P
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of MC06g2157 vs. NCBI nr
Match: KAG6590516.1 (hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131 bits (330), Expect = 9.98e-38
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  GGNRQKK-SHSFSIFSFFKSKRSRKGDHYD---SWDDVSCPNKVWPSDADKCHHWIAEPG 60
          GGNR KK S SFS  +FFKSKRSRKGD YD   +WDD+S P+KVWPSDADK HHW+AEPG
Sbjct: 2  GGNRHKKASSSFSFLAFFKSKRSRKGDGYDHGSTWDDLSYPSKVWPSDADKHHHWVAEPG 61

Query: 61 IDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          IDRKA DYI RIH +RVLET+ QT TV P
Sbjct: 62 IDRKADDYIKRIHLSRVLETKNQTVTVAP 90

[Close]

BLAST of MC06g2157 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 129 bits (323), Expect = 1.20e-36
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYD---SWDDVSCPNKVWPSDADKCHHWIAEPG 60
          G +RQKK+HS FSIFSFFKSKR RKGD Y+   +W+DV   +KVWPSD DK + W+AEPG
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPG 62

Query: 61 IDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          IDRKAKDYIDRI++NRV ETERQT T+ P
Sbjct: 63 IDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of MC06g2157 vs. ExPASy TrEMBL
Match: A0A0A0LY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 2.85e-42
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  GGNRQKKSH--SFSIFSFFKSKRS-RKGDHY-------DSWDDVSCPNKVWPSDADKCHH 60
          GGNRQKKSH  SFS    FKSKRS RKGDHY       +SW+D SCP+KVWPSDADKCH 
Sbjct: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61

Query: 61 WIAEPGIDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          W+AEPGIDRKAKDYIDRIHRNRV ET RQT T+ P
Sbjct: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 96

[Close]

BLAST of MC06g2157 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 3.80e-42
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYD---SW-DDVSCPNKVWPSDADKCHHWIAEP 60
          GGNRQKKSHS FSIFSFFKSKR RKGDHYD   +W D++   NKVWPSD DK HHWIAEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 61 GIDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          GIDRKAKDYIDRI+RNRV E+ERQT T+ P
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of MC06g2157 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 1.55e-41
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYD---SW-DDVSCPNKVWPSDADKCHHWIAEP 60
          GGNRQKKSHS FSIFSFFKS+R RKGDHYD   +W D++   NKVWPSD DK HHW+AEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 61 GIDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          GIDRKAKDYIDRI+RNRV E+ERQT T+ P
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of MC06g2157 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 5.81e-37
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYD---SWDDVSCPNKVWPSDADKCHHWIAEPG 60
          G +RQKK+HS FSIFSFFKSKR RKGD Y+   +W+DV   +KVWPSD DK + W+AEPG
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPG 62

Query: 61 IDRKAKDYIDRIHRNRVLETERQTFTVQP 85
          IDRKAKDYIDRI++NRV ETERQT T+ P
Sbjct: 63 IDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of MC06g2157 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 1.01e-36
Identity = 64/88 (72.73%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1  GGNRQKKSHS-FSIFSFFKSKRSRKGDHYD---SW-DDVSCPNKVWPSDADKCHHWIAEP 60
          GG++ KKSHS FS FSF KSK SRKGDHYD   SW D+ S   KVWPSD DK HHW+AEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 61 GIDRKAKDYIDRIHRNRVLETERQTFTV 83
          GIDRKAKDYIDRI+RNRV E+ERQT T+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTI 89

[Close]

BLAST of MC06g2157 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-15
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1  GGNRQKKSHSFSIFSFFKSKRSRKGDHYDSWDDVSCPNKVWPSDADKCHHWIAEPGIDRK 60
          G NR   S  FS+FSFFK++RS + +   SWDD     K   SD DK  +W+AEPGIDRK
Sbjct: 3  GKNRSHSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDRK 62

Query: 61 AKDYIDRIHRNRVLETERQTFT 83
          A  +I + H  RV E+ERQT +
Sbjct: 63 ASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of MC06g2157 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 4.1e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 30 SWDDVSCPNKVWPSDADKCHHWIAEPGIDRKAKDYIDRIHRNRVLETERQT 81
          SWDDV    K W SD DK  +W+AEPGIDRKA  +I + H +RV E+ERQT
Sbjct: 16 SWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQT 65

[Close]

BLAST of MC06g2157 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.4e-05
Identity = 24/76 (31.58%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 2  GNRQKKSHSFSIFSFFKSKRSRKGDHYDSWDDVSCPNKVWPSDADKCHHWIAEPGIDRKA 61
          G R+K S SFS+     ++ S++ D+++    ++   ++  +D D C   IAEP IDR+A
Sbjct: 7  GRRRKSSSSFSVVKSLFARCSKEKDNWNEERMINVRPRIMTTDDDGCSWTIAEPCIDRRA 66

Query: 62 KDYIDRIHRNRVLETE 78
            +I + H   + +TE
Sbjct: 67 TAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:

BLAST of MC06g2157 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g2157 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588556.1	2.45e-44	80.23	hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65989.1	5.88e-42	73.68	hypothetical protein Csa_006868 [Cucumis sativus]	[more]
KGN45870.1	7.86e-42	77.78	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6590516.1	9.98e-38	73.03	hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45873.1	1.20e-36	69.66	hypothetical protein Csa_005148 [Cucumis sativus]	[more]

BLAST of MC06g2157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY99	2.85e-42	73.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0K7Y2	3.80e-42	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	1.55e-41	75.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0	5.81e-37	69.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3	1.01e-36	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of MC06g2157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	1.6e-15	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	4.1e-11	58.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G48325.1	3.4e-05	31.58	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..82
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2157.1	MC06g2157.1	mRNA